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Report for Sequence Feature Glyma11g13870

Feature Type:gene_model
Chromosome:Gm11
Start:9873444
stop:9882713
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g13870
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G45140AT Annotation by Michelle Graham. TAIR10: lipoxygenase 2 | chr3:16525437-16529233 FORWARD LENGTH=896 SoyBaseE_val: 0ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0000096GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process SoyBaseN/AISS
GO:0006546GO-bp Annotation by Michelle Graham. GO Biological Process: glycine catabolic process SoyBaseN/AISS
GO:0006636GO-bp Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process SoyBaseN/AISS
GO:0006733GO-bp Annotation by Michelle Graham. GO Biological Process: oxidoreduction coenzyme metabolic process SoyBaseN/AISS
GO:0006766GO-bp Annotation by Michelle Graham. GO Biological Process: vitamin metabolic process SoyBaseN/AISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0008652GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process SoyBaseN/AISS
GO:0009072GO-bp Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process SoyBaseN/AISS
GO:0009106GO-bp Annotation by Michelle Graham. GO Biological Process: lipoate metabolic process SoyBaseN/AISS
GO:0009108GO-bp Annotation by Michelle Graham. GO Biological Process: coenzyme biosynthetic process SoyBaseN/AISS
GO:0009117GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process SoyBaseN/AISS
GO:0009269GO-bp Annotation by Michelle Graham. GO Biological Process: response to desiccation SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0015994GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll metabolic process SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0016117GO-bp Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process SoyBaseN/AISS
GO:0019216GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of lipid metabolic process SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019748GO-bp Annotation by Michelle Graham. GO Biological Process: secondary metabolic process SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0031408GO-bp Annotation by Michelle Graham. GO Biological Process: oxylipin biosynthetic process SoyBaseN/AISS
GO:0034440GO-bp Annotation by Michelle Graham. GO Biological Process: lipid oxidation SoyBaseN/AISS
GO:0044272GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur compound biosynthetic process SoyBaseN/AISS
GO:0051707GO-bp Annotation by Michelle Graham. GO Biological Process: response to other organism SoyBaseN/AISS
GO:0070838GO-bp Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport SoyBaseN/AISS
GO:0080027GO-bp Annotation by Michelle Graham. GO Biological Process: response to herbivore SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016165GO-mf Annotation by Michelle Graham. GO Molecular Function: lipoxygenase activity SoyBaseN/AISS
PTHR11771Panther LIPOXYGENASE JGI ISS
PTHR11771:SF2Panther LIPOXYGENASE JGI ISS
PF00305PFAM Lipoxygenase JGI ISS
PF01477PFAM PLAT/LH2 domain JGI ISS
UniRef100_I1LJS6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lipoxygenase n=1 Tax=Glycine max RepID=I1LJS6_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1LJS6UniRef Annotation by Michelle Graham. Best UniRef hit: Lipoxygenase n=1 Tax=Glycine max RepID=I1LJS6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g13870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g13870
ParalogEvidenceComments
Glyma12g05840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g13870 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g130200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g13870
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g13870
>Glyma11g13870.1   sequence type=CDS   gene model=Glyma11g13870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAAAGCCTCAAGTGTATCAATCACAGAACACCAATCAAACCCTCTTGTTTCTGCAGAGGCTATCCGTTCACAGCAGTACTGCATCTCTTCCACTATGGTTGGGGAGTAAAGTGCAGAGGCAAAAAAAGCTTAACCACCTCGTTCTGGTTTCACGCAACGTTGAAACTAATTCCACTACAACAGATACTCATACAGATAAGAGTACAGTGATTAAGGTTAAGGCCATAGTTAAGGTGAAAGTAACCGTGGGTGGTTTCTTCTCAAGTCTGAGGTTAGACCGAGGAATCGATGATATAACAGATTTGCTTGGTAAATCTCTCCTCTTAGAGCTTGTTAGCTCTGAGCTTGATCCTGTGACGGGGCTAGAGAAGGAAACACTGAAAGCATATGCACACAAAGCAGGAAATGGCGAGGAGTCGGTTAAGTACGAAGCTAAATTTGAAGTTCCAAATGATTTTGGGGAGATTGGTGCTGTTCTTGTTGAGAATGAGCATCACAAGGAGATGTTCCTTGAAACAATCCACCTCGATGGCTTCCCTGAGGGTCCTATTAATTTTCATTGTGCCTCTTGGGTTCACTCCAAGTTCGATAATCCTACCAAAAGGGTTTTCTTCTCCGACAAGTGTTACTTACCGCGAGAGACACCGAGTGGTTTAAGAAGACTACGTGAAGAAGAATTGAGTCATCTGAGAGGGAATGGAGAAGGAGAACGGAAGAGCTTTGAAAGAATATACGATTATGATATATACAATGACATTGGAGATCCTGATAAAAGCCTTGAACTTCAAAGACCTCCTTTAGGAGGTAAAGAGCGACCTTATCCTAGACGTTGTCGAACTGGTCGTCCACATAGTGAAGCAGATCCATTGTCAGAGAAAAGAAGTAGAAATTTTTACGTTCCAAGGGACGAGTGCTTCTCAGAGGTGAAGCAGCTCACGTTCTCAACCAAGACATTACACTCGGTGTTGCTAATATTGCTCCCAACTTTGGGGAAAATTATCAAAGAAAAGGAGCTTGCATTTTCCTACTTCCACGACATAGATTCACTCTTCAGCCATGGACTTGACTTGCCTCCCGAAGAAACCGAGAAGGGTTTCCTAGGAAAAATCATGCCCAGGCTCGTCAAATCCATCTCTGGCGACAGGACACACGTGCTTCGCTTCGAGACCCCAGAGACTATGAGCAGGGACAGGTTTTTCTGGTTTAGGGATGAGGAGTTTGCTAGACAGACTGTTGCTGGTCTCAACCCGTATAGTATACGATTGGTCACAGAATGGCCATTGAGGAGTAAACTTGACCCAGAAATATATGGTCCACCAGAATCAGCAATCACCTCAGAAATTATCAACAAAGAGATTGGAGGCATAATGTCTGTAGAAAAGGCGATTGAAAAAAAGAAGCTGTTCATGTTAGACTACCATGACATACTTTTACCCTACGTCAACAAAGTACGCAAACTCAAGGGGAAAACACTGTATGGTTCACGAACTTTGTTCTTTCTAAACTCAGAGGGGACACTGAGGCCTCTAGCCATTGAGTTGACTCGACCGCCGTCATCTTCAAATAATACGGGCCAATGGAAGCAAGTTTTCACACCTTCTTGGCACTCAACCAGTGTTTGGCTCTGGAGGTTTGCCAAGGCTCATGTTCTTGCACATGACTCTGGCTATCACCAACTTGTTAGTCATTGGTTAAGAACTCACTGTGTGACAGAGCCGTATGTTATTGCAACCAACAGGCAACTTAGTGAGTTGCACCCCATATACAAATTGCTACACCCTCATTTCCGTTATACAATGGAGATTAACGCTATCGCACGAGAAGCACTTATCAACGCTGATGGCACCATTGAGAGCTCATTTGCACCAGGAAAGTACTCCATAGAGATTAGCTCTGCTGCTTATGCTCTCGAATGGCGGTTTGACAAGCAGGCACTACCAGCAGATCTAGTTAGCAGGGGAATGGCTGTGAAAGATCCATTTTCTCCACATGGCTTAAAGCTCACCATTCAAGACTATCCTTTTGCCAATGATGGACTCCTTCTGTGGGATGCTATAAAGCTATGGGTCACTGACTATGTCAACCACTACTACCCTGAACCAAGTCTTGTGGAGTCAGACGAAGAGTTGCAGGCATGGTGGACAGAGATTAGAACACTTGGTCATGCTGACAAAAAAGACGAGCCATGGTGGCCACGTCTTAAAACCCCAAAAGACCTCATTGGAATCCTCAACACAATCATATGGGTAACTTCTGGTCACCATGCAGCTGTGAACTTTGGGCAATATGTTTATGGGGGATATTTCCCAAATAGGCCTACAATTGTCAGGACCAAAATGCCCTCAGAGGACCCTACAGAGGAAGAGTGGAAAAAGTTCATTGCAAACCCTGAAAGAGCACTCCTCAAGTGCTTTCCTTCACAACTTCAAGCAACTAGAGTCATGGCTGTCTTGGACATACTCTCAACTCATTCACCTGATGAGGAATACATAGGAGAGAAGATGGAACCATCATGGGGTGAAGATCCTGTCATAAAGGATGCCTTTGAAAGATTTAGAGAAAGACTGAAGAAATTAGAAACACTGATTGATGAGAGGAATGAAAACACAAAGTTGAAGAACAGAAATGGAGCTGGCATTGTTCCGTACGAGCTTTTGAAACCTTTCTCAAAGCCTGGTGTGACTGGAATGGGGGTTCCCTGTAGTATATCTATTTAA
Predicted protein sequences of Glyma11g13870
>Glyma11g13870.1   sequence type=predicted peptide   gene model=Glyma11g13870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKPQVYQSQNTNQTLLFLQRLSVHSSTASLPLWLGSKVQRQKKLNHLVLVSRNVETNSTTTDTHTDKSTVIKVKAIVKVKVTVGGFFSSLRLDRGIDDITDLLGKSLLLELVSSELDPVTGLEKETLKAYAHKAGNGEESVKYEAKFEVPNDFGEIGAVLVENEHHKEMFLETIHLDGFPEGPINFHCASWVHSKFDNPTKRVFFSDKCYLPRETPSGLRRLREEELSHLRGNGEGERKSFERIYDYDIYNDIGDPDKSLELQRPPLGGKERPYPRRCRTGRPHSEADPLSEKRSRNFYVPRDECFSEVKQLTFSTKTLHSVLLILLPTLGKIIKEKELAFSYFHDIDSLFSHGLDLPPEETEKGFLGKIMPRLVKSISGDRTHVLRFETPETMSRDRFFWFRDEEFARQTVAGLNPYSIRLVTEWPLRSKLDPEIYGPPESAITSEIINKEIGGIMSVEKAIEKKKLFMLDYHDILLPYVNKVRKLKGKTLYGSRTLFFLNSEGTLRPLAIELTRPPSSSNNTGQWKQVFTPSWHSTSVWLWRFAKAHVLAHDSGYHQLVSHWLRTHCVTEPYVIATNRQLSELHPIYKLLHPHFRYTMEINAIAREALINADGTIESSFAPGKYSIEISSAAYALEWRFDKQALPADLVSRGMAVKDPFSPHGLKLTIQDYPFANDGLLLWDAIKLWVTDYVNHYYPEPSLVESDEELQAWWTEIRTLGHADKKDEPWWPRLKTPKDLIGILNTIIWVTSGHHAAVNFGQYVYGGYFPNRPTIVRTKMPSEDPTEEEWKKFIANPERALLKCFPSQLQATRVMAVLDILSTHSPDEEYIGEKMEPSWGEDPVIKDAFERFRERLKKLETLIDERNENTKLKNRNGAGIVPYELLKPFSKPGVTGMGVPCSISI*






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