Glyma11g13750 - SoyBase

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Report for Sequence Feature Glyma11g13750

Feature Type:	gene_model
Chromosome:	Gm11
Start:	9766719
stop:	9774596
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g13750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G31510	AT	Annotation by Michelle Graham. TAIR10: IBR domain-containing protein \| chr2:13416991-13421170 REVERSE LENGTH=562	SoyBase	E_val: 0	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1815	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR11685	Panther	ARIADNE RING ZINC FINGER	JGI		ISS
PTHR11685:SF10	Panther	ARIADNE-2-RELATED	JGI		ISS
PF01485	PFAM	IBR domain	JGI		ISS
UniRef100_I1LJR4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJR4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q01IA7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: H0425E08.1 protein n=4 Tax=Oryza sativa RepID=Q01IA7_ORYSA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g13750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g13750

Paralog	Evidence	Comments
Glyma12g05740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g13750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g129000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g13750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g13750

Limit To All Plant Sequences

>Glyma11g13750.1   sequence type=CDS   gene model=Glyma11g13750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCAGAGGATGATATGCACGACGCCAACGACATCGAGTCCCTCGACGACGATTTCTACAGTGGCGAGACCGAGGACGCTCCTTTGGACTACTACAGCGACGACGACGCCGACGATTACTTCGACGACGCCGAGAGGATCGAGTCTCGCCGCCCTGAGCAAAATTTTACCATATTGAAGGAATCCGATATCCGACTAAGACAGGAAGATGACGTCGCTAGAGTAGCAACGGTTCTTTCCATATCAAGGGTTTCTGCAAGCTTACTACTCCGTCACCACAATTGGAGCGTCAGTAGAGTGCATGATACATGGTTTGCTGATGAAGAACGAGTTCGAAAAGCAGTTGGCTTGTTGGAGAAGCCAATTGTCCAGCATCCTAATGCTAGAGAGCTTACTTGCGGTATCTGTTTTGAAAATTATCCTCGTGCTAGGATTGAAATGGCTTCCTGTGGGCATCCCTATTGTATCTCATGCTGGGAAGGCTATATCAGCACATCCATTAATGATGGTCCGGGATGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTATTGGTCAAGATATGATTAATCTTTTAGTGTCTGATGAAGATAAGCAGAAATATGCACGTTACCTTCTTAGATCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTGCTGGAAATTATGATGTCTCTTGCTTCTGTTCATATGGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGCCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAGAACAGTGCTGAGTCTGAAAACATGAATTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGTAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACATGCACTCCGCCCTGTAAATTTGAATTTTGCTGGCTATGTGTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCAAAGAATTCGCTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACAGCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCTCAGCTTAAGTTCATAACTGAAGCCTGGCTACAAATAATTGAGTGTAGAAGAGTGCTGAAATGGACATATGCATATGGGTTTTATTTGCCGGAGCATGAGCATGCAAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCGGAAAAGGAACTACAGCCGTTCCTAAGTGCTGATGATCCATCTAGAGAATTCAATGACTTTCGTACAAAGCTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTAAGGGCATTAGAGAATGGTCTATCTGATGTGGGAAGTAATGGAGCTGCCTTCAGCAAAGCAACGAGCTCAAAAAATGCTGCTGGTAGCAGTAAGGGTAGAGCTGGAAGAGGAAAGGGAACTTTTCGAACTAGCTTGTCCAGCAAATTGAATGATGATAGTCATTGGTATTGTGAGCATTGTACCTATGCAAATGTCAAATCTGCCTCCACATGCCAGATGTGCTATCAACAACGTCGATGA

Predicted protein sequences of Glyma11g13750

Limit To All Plant Sequences

>Glyma11g13750.1   sequence type=predicted peptide   gene model=Glyma11g13750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESEDDMHDANDIESLDDDFYSGETEDAPLDYYSDDDADDYFDDAERIESRRPEQNFTILKESDIRLRQEDDVARVATVLSISRVSASLLLRHHNWSVSRVHDTWFADEERVRKAVGLLEKPIVQHPNARELTCGICFENYPRARIEMASCGHPYCISCWEGYISTSINDGPGCLMLRCPDPTCGAAIGQDMINLLVSDEDKQKYARYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSAGNYDVSCFCSYGFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCVGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIEKLSDIQCQPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLSADDPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVGSNGAAFSKATSSKNAAGSSKGRAGRGKGTFRTSLSSKLNDDSHWYCEHCTYANVKSASTCQMCYQQRR*

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