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Report for Sequence Feature Glyma11g13640

Feature Type:gene_model
Chromosome:Gm11
Start:9672115
stop:9674930
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g13640
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G59420AT Annotation by Michelle Graham. TAIR10: crinkly4 | chr3:21959871-21962558 REVERSE LENGTH=895 SoyBaseE_val: 0ISS
GO:0000280GO-bp Annotation by Michelle Graham. GO Biological Process: nuclear division SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007000GO-bp Annotation by Michelle Graham. GO Biological Process: nucleolus organization SoyBaseN/AISS
GO:0008356GO-bp Annotation by Michelle Graham. GO Biological Process: asymmetric cell division SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009786GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of asymmetric cell division SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009933GO-bp Annotation by Michelle Graham. GO Biological Process: meristem structural organization SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010311GO-bp Annotation by Michelle Graham. GO Biological Process: lateral root formation SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0048829GO-bp Annotation by Michelle Graham. GO Biological Process: root cap development SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0051301GO-bp Annotation by Michelle Graham. GO Biological Process: cell division SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009986GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell surface SoyBaseN/AISS
GO:0030139GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endocytic vesicle SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
GO:0019199GO-mf Annotation by Michelle Graham. GO Molecular Function: transmembrane receptor protein kinase activity SoyBaseN/AISS
GO:0042803GO-mf Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF840Panther JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_B9T5C6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Receptor protein kinase, putative n=1 Tax=Ricinus communis RepID=B9T5C6_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233D76BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D76B related cluster n=1 Tax=unknown RepID=UPI000233D76B SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g13640
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g13640 not represented in the dataset
Glyma11g13640 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g13640
ParalogEvidenceComments
Glyma12g05630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g13640 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g127700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g13640
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g13640
>Glyma11g13640.2   sequence type=CDS   gene model=Glyma11g13640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCTAATCAACCATACTGTTGGGGAAGCAGTTCCTACATTGAAATGGGAGTGCCTCAACCTATGATCAAAGGAGCACAGTACCTAGAAATCAGTGCTGGTGATTACCATGTCTGTGGCTTGAGGAAACCTATGACTGGAAGGCACAGGAACGTTTCCTTGGTTGATTGCTGGGGCTACAACATGACCAAGAACTATGTGGTTGGTGGAATGATTCAATCAATCTCAGCAGGTTCTGAATTCAACTGTGGCCTTTTTTCTCAGAACAGGACTGCGTTCTGCTGGGGAGATGAGACTAACAGCCTAGTCATTAGTTTGATTCCACATGACATGAGATTCCGGAAAATTTCAGCTGGGGGGTACCATGTGTGTGGAATCTCAGAAGGGGTGAACTCCAAAACTTTTTGTTGGGGGAGAAGCTTGAACCTTGAGGAAGAAATTTCAGTGTCACATGCAGGTCAAGGAAACGTTGATTTGGCACCAAATGACCCTATGCTTTCTTTAGTGGGAGGGAAGTTCCATGCATGTGGCATTAAGAGCTATGACCGTGGAGTTATTTGTTGGGGATTTATCATCAAACCAAGTTCACCATCTCCTAAAGGGATTAAGGTTTTTGAAGTTGCTGCTGGTGATTACTTTACTTGTGCAGTTCTTGCTGACAAATCTCTTATGCCTTTATGTTGGGGTGTTGGCTTTCCCACTTCTCTTCCTTTAGCTGTTTCACCAGGAATGTGCCAACCTTCTCCATGTGCTCCTGGCTCCTATGCAATTGATAAGCATAAGAGTCTTTGCAAGTCACCGGATTCTCGTGTTTGCATGAGGTGCAGTGGTGCTTGTCCTCCTGAAATGTATCTGAAGAGTGCATGCAATTTGGCATATGATAGAGTGTGTGAATATAACTGTTCCTCTTGTTCTTCATCTGAATGCTTCTTGAACTGCTCCTCTTCATATTCCAATGCTGCTGCTTCTACTGAGAAGAAAAGTGAAAAAATTTGGGCTCTGCAGTTGCCAGTTCTCATTGCTGAGATTGCTTTTGCAGTTTTCGTAGTTAGTATTATGTCAATAACTACGGTTTTATACGTCCGCTACAGGCTAAGAGATTGTGAGTGTTCAAAAGGGTCAGGGGTGAAGAAACTTGGTGGAAATTCTTCCTTCCAAAACGAGAACAAGGTGAGGCCAGACTTGGAGGAACTTAATAAGATCAGAAGGGCTCAAATATTCACCTATGAGGAGCTTGAAACTGCAACCGGTGGATTCAAGGAAGAGTCCATAGTAGGGAAGGGAAGTTTTTCTTGTGTGTTCAAGGGAGTTTTCAAAGATGGGACAGTTGTTGCTGTCAAAAGGGCTATAGTGTCTCCCAACATGCAGAAGAACTCCAAGGAGTTTAACACTGAACTTGACTTGCTCTCAAGGTTGAACCATGCTCATTTGCTCAACCTTCTAGGGTATTGCGAAGAAGGTGAAGAGAGGCTTCTTGTGTATGAGTTCATGGCTCACGGATCTTTGCACCAACACTTGCATGGAACAAACCAAGTGTTGAGAGAGCAACTAGATTGGATAAGAAGGGTCACAATTGCAGTTCAAGCGGCACGTGGAATCGAATACTTGCATGGATATGCTTGCCCTCCAGTGATTCATAGAGACATCAAGTCCTCAAACATTCTCATTGATGAAGAACACAATGCAAGAGTGGCTGATTTTGGTTTATCATTGTTAGGTCCTGCAGACAGTGGTTCCCCTTTGGCTGAACTCCCAGCTGGGACTCTTGGCTATCTTGATCCTGAGTACTATAGGCTTCACTACCTCACAACAAAATCTGATGTCTATAGCTTTGGTGTTCTCCTTTTGGAGATTCTAAGTGGTAGAAAAGCAATTGACATGCAATATGAAGAATGCAACATAGTGGAATGGGCAGTGCCTCTTATCAAATCAGGAGACATAACTGCGATTTCAGACCCGGTTTTAAAGCCTCCTCCTGATCTTGAAGCATTGAAGAGAATAGCAAATGTGGCTTGTAAGTGTGTGAGAATGAGAGGGAAAGAGAGGCCCTCAATGGATAAAGTAACAACAGCTTTGGAGAGAGGTCTTGCACAGTTAATGGGAAGTCCATGCATTGAGCAGCCTATTTTGCCCACTGAGGTGGTTTTGGGAAGCAACAGATTGCACAAGAAGTCATCTCAAAGGTCTTCAAACAGGTCAGTTTCTGAGACTGATGTGGCAGAAACTGAGGACCAAAGGTTTGAGTTTAGAGCACCCTCATGGATAACTTTCCCTAGTGTGGCATCTTCTCAGAGGAGAAAATCATCAGTGTCTGAGGAAGATGTAGATGGGAAGAACAATAATGCAGAAGGGAAGAACTTGGGCAATGTTGATGTTTTGAGAAGCCTTGAGGAAGAGATTGGTCCTGCTTCTCCAAGAGAGAGGATGTTCTTGCAGCACAACTTCTAA
Predicted protein sequences of Glyma11g13640
>Glyma11g13640.2   sequence type=predicted peptide   gene model=Glyma11g13640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSNQPYCWGSSSYIEMGVPQPMIKGAQYLEISAGDYHVCGLRKPMTGRHRNVSLVDCWGYNMTKNYVVGGMIQSISAGSEFNCGLFSQNRTAFCWGDETNSLVISLIPHDMRFRKISAGGYHVCGISEGVNSKTFCWGRSLNLEEEISVSHAGQGNVDLAPNDPMLSLVGGKFHACGIKSYDRGVICWGFIIKPSSPSPKGIKVFEVAAGDYFTCAVLADKSLMPLCWGVGFPTSLPLAVSPGMCQPSPCAPGSYAIDKHKSLCKSPDSRVCMRCSGACPPEMYLKSACNLAYDRVCEYNCSSCSSSECFLNCSSSYSNAAASTEKKSEKIWALQLPVLIAEIAFAVFVVSIMSITTVLYVRYRLRDCECSKGSGVKKLGGNSSFQNENKVRPDLEELNKIRRAQIFTYEELETATGGFKEESIVGKGSFSCVFKGVFKDGTVVAVKRAIVSPNMQKNSKEFNTELDLLSRLNHAHLLNLLGYCEEGEERLLVYEFMAHGSLHQHLHGTNQVLREQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSGSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEECNIVEWAVPLIKSGDITAISDPVLKPPPDLEALKRIANVACKCVRMRGKERPSMDKVTTALERGLAQLMGSPCIEQPILPTEVVLGSNRLHKKSSQRSSNRSVSETDVAETEDQRFEFRAPSWITFPSVASSQRRKSSVSEEDVDGKNNNAEGKNLGNVDVLRSLEEEIGPASPRERMFLQHNF*






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