SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G06040 | AT | Annotation by Michelle Graham. TAIR10: B-box zinc finger family protein | chr1:1828662-1829659 REVERSE LENGTH=248 | SoyBase | E_val: 5.00E-96 | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0006972 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic response | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0009266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus | SoyBase | N/A | ISS |
| GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0080167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to karrikin | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PF00643 | PFAM | B-box zinc finger | JGI | ISS | |
| UniRef100_Q308N9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Salt-tolerance protein n=1 Tax=Glycine max RepID=Q308N9_SOYBN | SoyBase | E_val: 2.00E-154 | ISS |
| UniRef100_UPI000189D245 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000189D245 related cluster n=1 Tax=unknown RepID=UPI000189D245 | SoyBase | E_val: 3.00E-172 | ISS |
|
Glyma11g13570 not represented in the dataset |
Glyma11g13570 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g05570 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g127100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g13570.1 sequence type=CDS gene model=Glyma11g13570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGATTCAGTGTGATGTGTGTGAGAAAGCCCCTGCAACCGTGATTTGTTGCGCAGATGAGGCAGCTTTGTGTGCCAAATGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTCCTTCAATGTCTATCAAACAAGCTTCCCAGATGTGACATATGCCAAGATAAGCCAGCTTTCATATTTTGTGTTGAGGACAGAGCACTCTTCTGTAAAGACTGTGATGAGCCAATTCATTTAGCCAGTAGCCTTTCTGCAAACCACCAGCGCTTCCTCGCTACTGGTATCAGGGTGGCTTTGGGTTCTAATTGCACCAAAGGCCATGAAAAAGGTAACATGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGAAAACTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCAGTTGATGACTTGTTGGAATTAACAGACTTTGAATCGCCAGACAAAAAGCAATCCCTGGAATTTGGAGAACTTGAATGGCTAGCAGATGCAGGCCTTTTCAGTGAACAGTTTCCTCATGAAGCTTTAGTCGCAGCTGAAGTTCCTCAGCTTCCAGTGCCACACACTAGCAGTGTTGCCTCACATAAAGCCCCCAAATCCTTGGTGTCTTACAAAAAGCCTAGGATTGAAGTCCTGGATGAAGATGATGATGAACACTGCACTGTCCCGGATCTCGGATAA
>Glyma11g13570.1 sequence type=predicted peptide gene model=Glyma11g13570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKPAFIFCVEDRALFCKDCDEPIHLASSLSANHQRFLATGIRVALGSNCTKGHEKGNMEPSNPNAQEVPVKTPSQQVPSFTSSWAVDDLLELTDFESPDKKQSLEFGELEWLADAGLFSEQFPHEALVAAEVPQLPVPHTSSVASHKAPKSLVSYKKPRIEVLDEDDDEHCTVPDLG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
