SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G15090 | AT | Annotation by Michelle Graham. TAIR10: FRS (FAR1 Related Sequences) transcription factor family | chr4:8614806-8617870 FORWARD LENGTH=827 | SoyBase | E_val: 1.00E-126 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0000724 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0009639 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to red or far red light | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0010017 | GO-bp | Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway | SoyBase | N/A | ISS |
| GO:0010018 | GO-bp | Annotation by Michelle Graham. GO Biological Process: far-red light signaling pathway | SoyBase | N/A | ISS |
| GO:0010212 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ionizing radiation | SoyBase | N/A | ISS |
| GO:0010218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to far red light | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
| GO:0016579 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein deubiquitination | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0042753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of circadian rhythm | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PF03101 | PFAM | FAR1 DNA-binding domain | JGI | ISS | |
| PF10551 | PFAM | MULE transposase domain | JGI | ISS | |
| UniRef100_I1LJN9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJN9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2QZM0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QZM0_ORYSJ | SoyBase | E_val: 0 | ISS |
|
Glyma11g13523 not represented in the dataset |
Glyma11g13523 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g05530 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g126700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g13523.1 sequence type=CDS gene model=Glyma11g13523 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGACAGAAATAACCATGATGAATGTTGGGAAAGCAACAGTGTAGACAATGGTGCTGAATCCATGGAAGAAGTAGATGAACTAGACGTAATTATGCATGATAACATGAATGGGGGTTTTGAACCTTGCGAGCCAGCATCAGGGATGTCATTTCCTTCCAAGGAAGCTGTTAAATCATTTTATAGGCAGTATGCTTCTAGAATGGGATTTGGTTCCAAAGTAAGAAACTCAAAAAAAGGACGTGATGGAAAGTTACACTATTTTATATTAACATGTTCACGAGAGGGAACTCGTGTGCCAAACACTTTGAAGACATTGCCCACAATCAAGAATAATTGTGAAGCCAAAATTACAGTTTCCTTCAAAGATGGACTGTGGTACATAATGAAAGCAGTACTTGACCACTCCCATGAACTTAGCCCTACAAAGGCAATGATGCTCCGAGTAAACAAAAACACTAGCATGCATGTGAACAGAACAATAGAAATCAATCATGAAGCAAAGGCAGTGATGAACAAGACCATCCAATCTCTTGCTTGTGACGTGGGAGGGTACAGAAATTTATCATTTGTTGAAGGAGATGTGAAAAATCATGTTCTGAAGGAAAGACATACAATTGGTAAGGAAGGTGATGGTAAGGCTCTAAGGAGCTATTTTTTAAGGATGCAGGAGCAAAATTGTAATTTCTTCTACGATATAGACTTGGATGATTTTTTTCGTGTGAAAAATGTATTTTGGGCTGATGCAAGAAGTAGGGCAACATACGATTCATTTGGGGATGTGGTTACTTTTGACACAACATATCTAACAAAAAAGTATGACATGCCATTTGTTTCATTTGTTGGCGTTAATCATCATGGACAACATGTTTTATTGGGATGTGCTCTACTCTCTAGTGAAGACACAGAGTCATTTGTGTGGCTGTTTGAATCCTGGCTTCGTTGCATGTCAGGCAATCCTCCAAAAGGTATAGTGACTGAGCAAAGCAAAGCAATCCAAAAAGCAATTCAGCTAGTCTTTCCAACAACCCAACATAGGTGGTGCTTATGGCATGTAATGAAAAAAATCCCCGAGAAGTTGAAAACAAACACTGAATACAATAAGAATATAAAGAGTGCCATGAGAAGTGTAGTTTATGATACCTTCACAGAAGCTGAATTTGAAGATCAATGGAGTCATTTCATAAAAGGATTCAACCTACAAGACAATGAATGGTTGAGTGAGTTGTACAACGAACGAAGTAGATGGGTTCCAATTTTCTTAAAGAAGGATTTTTGGGCAGGAATGTCTACCACTCAACAAGGTGAAAACGTACATCCTTTCTTTGATGGATATATCAACTCAACAACATCTTTGCAACAGTTTGTCCAACTGTATGATATTGCTCTCTATGGCAAGGTAGAAAAAGAATTTGAAGCTGATTTACGATCATTCAGCACTACTATTCATTGTGGGTCAAATTCAATGATTGAAAAGCAATTCCAATCTGCTTATACCCATGCAAAATTTAATGAGGTGCAAGCTGAATTTAGAGCAAAAATTAATTGTTCTGTATCCCTTAGGGATGTGGAAGGTAGCATTTGTACTTATGATGTGTTGGAGGACATAATAGTTGAAGGACAACCAAAGGAAGCTATTTTTGAGGTAGTATTTCATCGTGACAATCATGATTTTAGCTGCAAATGTTTATTGTTTGAGTTTAGAGGTATTATGTGTAGACATTCGCTCATTGTATTTGCACAAGAAAGGGTGAAACAAGTGCCGTCAAAGTATATCTTGCAAAGATGGACCAAAAATATAAAACGGAGACATTCATGTACTAGGAGTAGTTATGATTTGATACAATTGAAGCCACAAATGCAAAGGTATGACAATTTATGCAAGGACTTTAATGAGATTGCAGAACTTGCTGCTGAGTTTGAGGGTGTTTCCCATTTCCTCCAAAATAGCTTGCATGATTTGAAAAGGAAGGTGCAATCCATGGCTCTATCCACTCACCGGCCTTCTTCATTCTTACATAAATAG
>Glyma11g13523.1 sequence type=predicted peptide gene model=Glyma11g13523 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDRNNHDECWESNSVDNGAESMEEVDELDVIMHDNMNGGFEPCEPASGMSFPSKEAVKSFYRQYASRMGFGSKVRNSKKGRDGKLHYFILTCSREGTRVPNTLKTLPTIKNNCEAKITVSFKDGLWYIMKAVLDHSHELSPTKAMMLRVNKNTSMHVNRTIEINHEAKAVMNKTIQSLACDVGGYRNLSFVEGDVKNHVLKERHTIGKEGDGKALRSYFLRMQEQNCNFFYDIDLDDFFRVKNVFWADARSRATYDSFGDVVTFDTTYLTKKYDMPFVSFVGVNHHGQHVLLGCALLSSEDTESFVWLFESWLRCMSGNPPKGIVTEQSKAIQKAIQLVFPTTQHRWCLWHVMKKIPEKLKTNTEYNKNIKSAMRSVVYDTFTEAEFEDQWSHFIKGFNLQDNEWLSELYNERSRWVPIFLKKDFWAGMSTTQQGENVHPFFDGYINSTTSLQQFVQLYDIALYGKVEKEFEADLRSFSTTIHCGSNSMIEKQFQSAYTHAKFNEVQAEFRAKINCSVSLRDVEGSICTYDVLEDIIVEGQPKEAIFEVVFHRDNHDFSCKCLLFEFRGIMCRHSLIVFAQERVKQVPSKYILQRWTKNIKRRHSCTRSSYDLIQLKPQMQRYDNLCKDFNEIAELAAEFEGVSHFLQNSLHDLKRKVQSMALSTHRPSSFLHK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
