Glyma11g13500 - SoyBase

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Report for Sequence Feature Glyma11g13500

Feature Type:	gene_model
Chromosome:	Gm11
Start:	9589210
stop:	9593490
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g13500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06110	AT	Annotation by Michelle Graham. TAIR10: SKP1/ASK-interacting protein 16 \| chr1:1853237-1854938 REVERSE LENGTH=436	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0019005	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG4408	KOG	Putative Mg2+ and Co2+ transporter CorD	JGI		ISS
PTHR14289	Panther	F-BOX ONLY PROTEIN 3	JGI		ISS
PTHR14289:SF10	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF04379	PFAM	Protein of unknown function (DUF525)	JGI		ISS
UniRef100_G7JEW2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box protein SKIP16 n=1 Tax=Medicago truncatula RepID=G7JEW2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LJN6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJN6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g13500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g13500

Paralog	Evidence	Comments
Glyma12g05510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g13500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g126500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g13500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g13500

Limit To All Plant Sequences

>Glyma11g13500.2   sequence type=transcript   gene model=Glyma11g13500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAATTTTTCAGCTATTAAAAAGTAGCTAAAATCTCTTGGATATAATTGTCTATGCATCGTAGATGCTAAAACACACTGAAGTCATATTAGGATTTTTGTTATTATTTTGTGGCAGCAGTGACAGAGTGATTGGTGTGAGTGCGGCAATTACTGGAACAGCGGTTGAGTGTGCGATCGAGAAAGCAGAGAAATGGGGTTGGAATCGGTGGGAGATTTAGCGATTCACGTGATTCTCAGTAAGTTAGGAGCCCAAGACACTGCCAGAGTCGCGTGTGTGAGCAAAAGGTTCTGTTCTTCCGCTTCCGACGACACTCTCTGGATCAATCACTGCTTCCACGAACTCGCTCTGACACAACCCCTCGATCATCTCGGAAACCCTCTCTCTTCCTTCAAGGAATGCTATCAAGCATGGCGAGGAGCTTTTGTTATGTATCCTTGGTCTCTTGTTAAGCGTGTAAAAAGGTGCTGGGATAAAATAAAAACCTGGTTGACCAATAATTTTCCTGAAGCTGAGGCCACTCTTTGTAAAGGTGCTACTGAAGCTGACATTCAGGAGTTGGAGAATGTATTAAAGGTGAAATTGCCACTTCCTTCAAGGATCCTTTATCGTTTTCACAATGGGCAAGAAATTGCAAAAGCAGATCCAGAAACTACTACATATGGCAGTTCTTTGGGTCTAATTGGTGGCTACTCCTTCTATAGTCATTTGGTGAATGTTTATCTATTACCTATACGTCAGATAATCCTAGAAACAAAGCAAACTAGGCGTCACTTGAGCTTTTTAAGAAGATCAAAGTATGTTCTCGTGGCTGCTTCATCCACATACAGTAGAAAGTTATTTTTCCTCAACTGTACCAATGGTCAACTATATGTTGGGACCAGGGATCTACTTACTGAAGGAGACATAATCCCTTGTGTACCTCATGATCTGATTAATTTACATCAGGAATTGAATATTTCAGAGCAACAAGATGCCATGCTACTGTGGTTAGAAGAACATGGTCGCCGTTTAGAACATGGCTTTATCAAACTTCATGACAAAGGAAATGGCAAAAGCATTAATCTTTTCCCAGAAGAACCCCCTCTTTGTTCAATGGCTGTTACTAATGGTGTGAAGGTTCGTGCTTCTGCATTGGTTATCCCTGAGTTGATTGATCTTCAAGATGACCTTGAAAAGTACTTATTTGCTTATTCAATCCGCTTGTCCCTTGAACCTCAAGGGTGCACTATTAATGGAATGTCCTTCAGCTCCTGCCAGCTCCATTGGAGGCACTGGATCATCCGAGCTAATGATATTGTTATATCTGATGTCAATGGAGAAGCTGTTATAGGACAGTATCCACTTTTGCGTCCAGGTGCTCAAGAATTTGTCTATCAGAGTCGCATGCATCTACCAACACCATCAGGTTCCATTGAAGGTTCTTTTACATTTATACCCGATTGGCAGACCCAAAAGGAGATCCTTTTCTAGCTACAGTGGCTCGTTTCCCGCTCCAGCTTCCAGACTATATTTTCTGATTTTGATGCTAGATGGGATTGAAGCATCTCTAATGGCAAATGCAGCTCTCAGTATATTGTTTGGGTGCATTATGTCATTTTCGTGAGAGTTGCTAGGTCGTTGAGTTTTTTAAGTTGGACCTGCACAATTTCCCTATCTATTATATATCAATATCTATCTATCTGTATCTAGTGTGGTGTAGTAATAATTCGATTACTTGCGTTCTTGACTTGTGTATTAACTTCCTATCCTTCATTCATTGTACAAATCTATATGCATGCAGCAATTCAATGATACATATTTAGTATTGTCGTCTATAACATGGGAACGTGTTTGTGTTAAGTGGTGGTTTGCAATGCGTACTCTAATATTTACGATACAATGTTAGTTGTTAAAGTAAAGCAATGTTAGAGAATCCGGTCCATATGCTTTTGTTCTTGAAAGTGAATGTATTATTATTCTAGTTCCAGTATTAGTATAAAAAAAGAAAACAAAGTGAATGCATTGTATTTATTCTCCATAAAGCAAACAAAAGTGCATTGC

Coding sequences of Glyma11g13500

Limit To All Plant Sequences

>Glyma11g13500.1   sequence type=CDS   gene model=Glyma11g13500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTGGAATCGGTGGGAGATTTAGCGATTCACGTGATTCTCAGTAAGTTAGGAGCCCAAGACACTGCCAGAGTCGCGTGTGTGAGCAAAAGGTTCTGTTCTTCCGCTTCCGACGACACTCTCTGGATCAATCACTGCTTCCACGAACTCGCTCTGACACAACCCCTCGATCATCTCGGAAACCCTCTCTCTTCCTTCAAGGAATGCTATCAAGCATGGCGAGGAGCTTTTGTTATGTATCCTTGGTCTCTTGTTAAGCGTGTAAAAAGGTGCTGGGATAAAATAAAAACCTGGTTGACCAATAATTTTCCTGAAGCTGAGGCCACTCTTTGTAAAGGTGCTACTGAAGCTGACATTCAGGAGTTGGAGAATGTATTAAAGGTGAAATTGCCACTTCCTTCAAGGATCCTTTATCGTTTTCACAATGGGCAAGAAATTGCAAAAGCAGATCCAGAAACTACTACATATGGCAGTTCTTTGGGTCTAATTGGTGGCTACTCCTTCTATAGTCATTTGGTGAATGTTTATCTATTACCTATACGTCAGATAATCCTAGAAACAAAGCAAACTAGGCGTCACTTGAGCTTTTTAAGAAGATCAAAGTATGTTCTCGTGGCTGCTTCATCCACATACAGTAGAAAGTTATTTTTCCTCAACTGTACCAATGGTCAACTATATGTTGGGACCAGGGATCTACTTACTGAAGGAGACATAATCCCTTGTGTACCTCATGATCTGATTAATTTACATCAGGAATTGAATATTTCAGAGCAACAAGATGCCATGCTACTGTGGTTAGAAGAACATGGTCGCCGTTTAGAACATGGCTTTATCAAACTTCATGACAAAGGAAATGGCAAAAGCATTAATCTTTTCCCAGAAGAACCCCCTCTTTGTTCAATGGCTGTTACTAATGGTGTGAAGGTTCGTGCTTCTGCATTGGTTATCCCTGAGTTGATTGATCTTCAAGATGACCTTGAAAAGTACTTATTTGCTTATTCAATCCGCTTGTCCCTTGAACCTCAAGGGTGCACTATTAATGGAATGTCCTTCAGCTCCTGCCAGCTCCATTGGAGGCACTGGATCATCCGAGCTAATGATATTGTTATATCTGATGTCAATGGAGAAGCTGTTATAGGACAGTATCCACTTTTGCGTCCAGGTGCTCAAGAATTTGTCTATCAGAGTCGCATGCATCTACCAACACCATCAGGTTCCATTGAAGGTTCTTTTACATTTATACCCGGCAGATTGGCAGACCCAAAAGGAGATCCTTTTCTAGCTACAGTGGCTCGTTTCCCGCTCCAGCTTCCAGACTATATTTTCTGA

>Glyma11g13500.2   sequence type=CDS   gene model=Glyma11g13500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTGGAATCGGTGGGAGATTTAGCGATTCACGTGATTCTCAGTAAGTTAGGAGCCCAAGACACTGCCAGAGTCGCGTGTGTGAGCAAAAGGTTCTGTTCTTCCGCTTCCGACGACACTCTCTGGATCAATCACTGCTTCCACGAACTCGCTCTGACACAACCCCTCGATCATCTCGGAAACCCTCTCTCTTCCTTCAAGGAATGCTATCAAGCATGGCGAGGAGCTTTTGTTATGTATCCTTGGTCTCTTGTTAAGCGTGTAAAAAGGTGCTGGGATAAAATAAAAACCTGGTTGACCAATAATTTTCCTGAAGCTGAGGCCACTCTTTGTAAAGGTGCTACTGAAGCTGACATTCAGGAGTTGGAGAATGTATTAAAGGTGAAATTGCCACTTCCTTCAAGGATCCTTTATCGTTTTCACAATGGGCAAGAAATTGCAAAAGCAGATCCAGAAACTACTACATATGGCAGTTCTTTGGGTCTAATTGGTGGCTACTCCTTCTATAGTCATTTGGTGAATGTTTATCTATTACCTATACGTCAGATAATCCTAGAAACAAAGCAAACTAGGCGTCACTTGAGCTTTTTAAGAAGATCAAAGTATGTTCTCGTGGCTGCTTCATCCACATACAGTAGAAAGTTATTTTTCCTCAACTGTACCAATGGTCAACTATATGTTGGGACCAGGGATCTACTTACTGAAGGAGACATAATCCCTTGTGTACCTCATGATCTGATTAATTTACATCAGGAATTGAATATTTCAGAGCAACAAGATGCCATGCTACTGTGGTTAGAAGAACATGGTCGCCGTTTAGAACATGGCTTTATCAAACTTCATGACAAAGGAAATGGCAAAAGCATTAATCTTTTCCCAGAAGAACCCCCTCTTTGTTCAATGGCTGTTACTAATGGTGTGAAGGTTCGTGCTTCTGCATTGGTTATCCCTGAGTTGATTGATCTTCAAGATGACCTTGAAAAGTACTTATTTGCTTATTCAATCCGCTTGTCCCTTGAACCTCAAGGGTGCACTATTAATGGAATGTCCTTCAGCTCCTGCCAGCTCCATTGGAGGCACTGGATCATCCGAGCTAATGATATTGTTATATCTGATGTCAATGGAGAAGCTGTTATAGGACAGTATCCACTTTTGCGTCCAGGTGCTCAAGAATTTGTCTATCAGAGTCGCATGCATCTACCAACACCATCAGGTTCCATTGAAGGTTCTTTTACATTTATACCCGATTGGCAGACCCAAAAGGAGATCCTTTTCTAG

Predicted protein sequences of Glyma11g13500

Limit To All Plant Sequences

>Glyma11g13500.1   sequence type=predicted peptide   gene model=Glyma11g13500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLESVGDLAIHVILSKLGAQDTARVACVSKRFCSSASDDTLWINHCFHELALTQPLDHLGNPLSSFKECYQAWRGAFVMYPWSLVKRVKRCWDKIKTWLTNNFPEAEATLCKGATEADIQELENVLKVKLPLPSRILYRFHNGQEIAKADPETTTYGSSLGLIGGYSFYSHLVNVYLLPIRQIILETKQTRRHLSFLRRSKYVLVAASSTYSRKLFFLNCTNGQLYVGTRDLLTEGDIIPCVPHDLINLHQELNISEQQDAMLLWLEEHGRRLEHGFIKLHDKGNGKSINLFPEEPPLCSMAVTNGVKVRASALVIPELIDLQDDLEKYLFAYSIRLSLEPQGCTINGMSFSSCQLHWRHWIIRANDIVISDVNGEAVIGQYPLLRPGAQEFVYQSRMHLPTPSGSIEGSFTFIPGRLADPKGDPFLATVARFPLQLPDYIF*

>Glyma11g13500.2   sequence type=predicted peptide   gene model=Glyma11g13500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLESVGDLAIHVILSKLGAQDTARVACVSKRFCSSASDDTLWINHCFHELALTQPLDHLGNPLSSFKECYQAWRGAFVMYPWSLVKRVKRCWDKIKTWLTNNFPEAEATLCKGATEADIQELENVLKVKLPLPSRILYRFHNGQEIAKADPETTTYGSSLGLIGGYSFYSHLVNVYLLPIRQIILETKQTRRHLSFLRRSKYVLVAASSTYSRKLFFLNCTNGQLYVGTRDLLTEGDIIPCVPHDLINLHQELNISEQQDAMLLWLEEHGRRLEHGFIKLHDKGNGKSINLFPEEPPLCSMAVTNGVKVRASALVIPELIDLQDDLEKYLFAYSIRLSLEPQGCTINGMSFSSCQLHWRHWIIRANDIVISDVNGEAVIGQYPLLRPGAQEFVYQSRMHLPTPSGSIEGSFTFIPDWQTQKEILF*

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