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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G06720 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:2060615-2067281 REVERSE LENGTH=1147 | SoyBase | E_val: 0 | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0042254 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG1980 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12858 | Panther | RIBOSOME BIOGENESIS PROTEIN | JGI | ISS | |
| PTHR12858:SF2 | Panther | gb def: tsr1p [saccharomyces cerevisiae] | JGI | ISS | |
| PF00009 | PFAM | Elongation factor Tu GTP binding domain | JGI | ISS | |
| PF04950 | PFAM | Protein of unknown function (DUF663) | JGI | ISS | |
| PF08142 | PFAM | AARP2CN (NUC121) domain | JGI | ISS | |
| UniRef100_G7JEW5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribosome biogenesis protein BMS1-like protein n=1 Tax=Medicago truncatula RepID=G7JEW5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C574 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C574 related cluster n=1 Tax=unknown RepID=UPI000233C574 | SoyBase | E_val: 0 | ISS |
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Glyma11g13340 not represented in the dataset |
Glyma11g13340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g05360 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g125100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g13340.1 sequence type=CDS gene model=Glyma11g13340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGTCAACGACGCCGATCAATCCAATAAGTCTCACAGGACTCGTCAATCTGGTGCCAAAACCAACAAGAAGAAGAAGACTAAGAAGAAGCAAAAGCAGAATCCCGATGACGCCGGAGGATTAGAGGATCCTAAGAACCGAAACCCTAAGGCATTCGCTTTCACTTCCTCCAACAAAGCCAAGCGCTTGCAATCACGCGCCGTCGAGAAAGAGCAGCGCCGCCTCCACGTTCCCGTCATCGACCGCTCCTACGACGAACCCGCTCCCTACGTCGTCGTTGTGCAGGGCCCTCCTCAGGTTGGGAAGTCACTGTTGATTAAGTCTTTGGTTAAACATTACACGAAACATAATTTGCCTGATGTGAGAGGTCCAATTACCATCGTATCAGGGAAGCAAAGGCGGGTGCAGTTTGTGGAATGTCCGAATGATATCAATGGCATGATAGATGCCGCGAAGTTTGCCGATCTAGCACTTCTTCTTATAGATGGAAGTTATGGTTTCGAAATGGAAACCTTTGAGTTCCTTAACATATTGCAAGTTCATGGGTTCCCTAAGGTCATGGGGGTTCTCACCCACCTTGATAAATTCAAGGATGCGAAGAAGTTGAGGAAAACAAAACAGCGACTCAAGCACCGGTTCTGGACTGAAATATATGATGGCGCTAAACTGTTTTACTTATCGGGCCTTATTCATGGAAAGTATGTCAAGCGTGAAGTTCACAATCTTGCTCGATTTATATCAGTCATGAAGTTTCATCCTTTATCTTGGCGAACTTCTCACCCCTATGTTATGGTAGATCGTTTTGAAGACATCACTCCTCCTGAAAAAGTGCATGCAAATAATAAATGTGACAGAAAAGTCACTCTTTATGGCTATCTTAGAGGCTGCAATTTGAAAATGGGCAATAAGGTGCACATAGCAGGAGTGGGTGATTATAGTTTAGCTGTTGTTACTGCTTTACCTGATCCTTGTCCTCTTCCATCTGCCGCAAAAAAGAAAGGACTGCGTGATAAGGAAAAGTTATTCTATGCTCCCATGTCTGGCCTTGGGGATCTTTTGTACGACAAAGATGCTGTATACATAAATATTAATGATCACCTTGTTCAATTCTCAAAAGTTGATGAAAACTCTGCTATGACGAGTAAAGGAAAGGGTGGAGATATTGGGGAGGATTTGGTGAAATCGCTACAGAATATCAAATACTCAATTAATGAAAAACTAGAGAACAGCTTTATCAATATTTTTGGTCAAAAGACAAATGTGTCATCAGAAGCTCTAGGTGATGCACATGGCACAAACAAGGAAGTTGAACCAAATGGCAAAACAGAAGCTTTGGATAAATATCAGCCTGGGGCTGTTATAACTGGTGAAGATAATAACAAAATGGATTTGGATGGTTCAGAATCATCTGATCAGGATGAAGATGATGCCACAGACAGAGAACCCTCTGGTTCTGATGATGATGACAAAGATGCACCAAATAGTAATGCTAGTAATGGAGTCCATTTGCAAGAACATATTGAGTTTCATGATGGAAGACAGAGGAGAAGAGCAATATTTGGAAATGATGTTGATCAAAATGATCTGATGGATTCAGAAGGGGATGATGATGGTGATACCAGTGATGATGATGTAGAATCTTCAGAAGAGGAGGAGGAAGATGACAATGATAATGATGACACAAATGAAGATAACATGGGTAATGTTTCCAAATGGAAAGAGTCTTTGGCAGAAAGAAATCTCTCACGGAAAACTCCTAGTTTGATGCAACTTGTGTACGGGGAATCTACAATTAATTCCACCACTATAAACAGAGATAATGATAATAGTGGGGATGAGGAAAGTGATGATGACTTTTTTAAGCCCATAGAAGAAGTGAAAAAGCAAAACGTGAGAGATGGATTGAATGACGATGGGATGGTCAACACTGAGGATTGTTCCAAGTGTACACAATTTGTGGATCAGAGATGGGATGAGAATGATAATGAGGAGATTCGCAATCGATTTGTGACTGGCAATTTGGCAAAAGCTGCACTTAGAAATGCATTACCAGCAGCTAATACTGAAGAGGAAAATGATGATGTCTATGGTGACTTTGAAGATTTGGAAACAGGAGAAAAGCATGAGAATCATCAGACGGATGATGCTTTGGCTGCAACAACACACAAGGGAGATGATTTAGAAGCTGAGGAGCGGAGGCTTAAGAAACTTGCTCTTCGTGCTAAGTTTGACTCTCAATTTGATGATGACTCTGGGTCATCAGAGGAAGATACTGGTAATGAAAATGAAGACAAGTTCCGTCGTGGTCAAGCTAATGAAAGTAGCTATTTTGACAAGTTGAAAGAGGAGATTGAACTCCAGAAACAAATGAATATAGCTGAACTCAACGATCTTGATGAGGCTACCCGATTGGAGATAGAAGGCTTCCGAACAGGAACTTATCTAAGATTGGAGATTCATGATGTTCCTTGTGAGATGGTTGAATACTTTGATCCCTACCATCCAATATTGGTTGGAGGGATTGGTATAGGGGAGGAAAATGTTGGATACATGCAGGCCAGGTTAAAGCGGCACAGGTGGCACAAGAAAGTTTTGAAGACTAGAGACCCAATTATTGTATCTGTTGGATGGAGGCGTTACCAGACAACCCCAATTTATGCCATTGAGGATAGTAATGGAAGGGATCGTATGCTAAAATATACTCCAGAACACATGCATTGCCTTGCTATGTTTTGGGGCCCTCTTGCTCCTCCCAACACTGGGGTTGTAGCCTTTCAGAACTTATCAAACAATCAGGCAACATTTAGGATTACTGCAACTGCAGTTGTACTTGAGTTTAATCATGCAGCAAGGATAGTGAAGAAAATCAAATTGGTTGGTTATCCATGCAAGATATTCAAGAAGACAGCACTTATCAAGGATATGTTTACCTCAGATCTTGAAGTAGCTCGTTTTGAAGGTGCAGCTATTCGGACAGTCAGTGGGATTAGGGGGCAGGTCAAGAAGGCTGCAAAAGAAGAGATAGGTAATCAAGCGAAAAGGAAGGGTGGGCAAACCAAAGAAGGAATTGCTAGGTGCACTTTTGAAGACAAAATTCTGATGAGTGACATAGTTTTCCTGCGTGCATGGACTCAAGTTGAAGTTCCTCAGTTTTATAATCCATTGACAACAGCATTGCAGCCTCGTGACATGACCTGGAAAGGAATGAAAACTGTTGCAGAATTGAGAAGAGAGCATAATCTTGCTATTCCTGTAAATAAAGATTCACTTTACAAGAAAATTGAAAGAAAACCTAGAAAATTCAATCCAGTGGTGATTCCCAAGTCTCTACAAGCGAGTCTACCCTTTGCATCAAAACCGAAGGATATTTCCAAGCGAAAAAAGCCGTTACTTGAGGAGAGAAGGGCAAGGGGTGTTGTCATGGAACCTCGAGAGCGCAAAGTTCATACTCTTGTTCAACACCTCCAGTTAATAGATAGGGAGAAGATGAAAAAGCGAAAGCTTAAGGAAGAGAATAAGAGGAAAGCACTTGAAGCAGAGAGTGCAAAAGAAGAGCTGTTGTTGAGAAAGCGCCGGAGAGAGGAGAGAAGAGACAAATACCGGAAGGAAGACAAGCAGAATAAGAAAATTCGGAGAGCAGAGGTTTGA
>Glyma11g13340.1 sequence type=predicted peptide gene model=Glyma11g13340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVNDADQSNKSHRTRQSGAKTNKKKKTKKKQKQNPDDAGGLEDPKNRNPKAFAFTSSNKAKRLQSRAVEKEQRRLHVPVIDRSYDEPAPYVVVVQGPPQVGKSLLIKSLVKHYTKHNLPDVRGPITIVSGKQRRVQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDAKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVMVDRFEDITPPEKVHANNKCDRKVTLYGYLRGCNLKMGNKVHIAGVGDYSLAVVTALPDPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLLYDKDAVYININDHLVQFSKVDENSAMTSKGKGGDIGEDLVKSLQNIKYSINEKLENSFINIFGQKTNVSSEALGDAHGTNKEVEPNGKTEALDKYQPGAVITGEDNNKMDLDGSESSDQDEDDATDREPSGSDDDDKDAPNSNASNGVHLQEHIEFHDGRQRRRAIFGNDVDQNDLMDSEGDDDGDTSDDDVESSEEEEEDDNDNDDTNEDNMGNVSKWKESLAERNLSRKTPSLMQLVYGESTINSTTINRDNDNSGDEESDDDFFKPIEEVKKQNVRDGLNDDGMVNTEDCSKCTQFVDQRWDENDNEEIRNRFVTGNLAKAALRNALPAANTEEENDDVYGDFEDLETGEKHENHQTDDALAATTHKGDDLEAEERRLKKLALRAKFDSQFDDDSGSSEEDTGNENEDKFRRGQANESSYFDKLKEEIELQKQMNIAELNDLDEATRLEIEGFRTGTYLRLEIHDVPCEMVEYFDPYHPILVGGIGIGEENVGYMQARLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPIYAIEDSNGRDRMLKYTPEHMHCLAMFWGPLAPPNTGVVAFQNLSNNQATFRITATAVVLEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAAKEEIGNQAKRKGGQTKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRDMTWKGMKTVAELRREHNLAIPVNKDSLYKKIERKPRKFNPVVIPKSLQASLPFASKPKDISKRKKPLLEERRARGVVMEPRERKVHTLVQHLQLIDREKMKKRKLKEENKRKALEAESAKEELLLRKRRREERRDKYRKEDKQNKKIRRAEV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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