SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G11800 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44150.1); Has 74 Blast hits to 73 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:3726154-3727562 FORWARD LENGTH=246 | SoyBase | E_val: 1.00E-85 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR21454 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR21454:SF1 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| UniRef100_C6TNV6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TNV6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q6F3B3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6F3B3_ORYSJ | SoyBase | E_val: 2.00E-84 | ISS |
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Glyma11g13240 not represented in the dataset |
Glyma11g13240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g05270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g124400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g13240.2 sequence type=transcript gene model=Glyma11g13240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATCAGTTAACCTTTTTCTATGTCTTGGAATCACAGACACGCCAACCTTCAGCTTCAATCTCTTTAACATTCTTAAAATACAAAACTCGTATATCTTGATTTTTTAGGTATGCAGATCGATTCCTTGCTTCATTGTTCTATTCTGTCACACACGTGTTGACCCATTGCTTAGAAAATGATCATGCTTTTGAAGATGGATGAAGTTTTTGCCATGTCCAAGATGAGGAAAGCAGATTTGGTGAAACGGGTGGTGATCATTGCCGTGATGGCTATTGCAGATGCAGCTGATACAAATGATGTTTATAGTCCATGTCTTGATGCTAAAGTTCAGAGAGGAGATGGTTTTACATTCGGTATTGCATTTTCAGACAAGGAATTTTTCTCCCAAGGTAATGGTCCGCAGCTTTCGCCTTGCGACAAACGCCTAGACCTCGCAAACAAAGGAGCACAGCTTTCTGTTTTCAGGCCGACGGTTGATGAGATCTCACTGCTCACCATCAACAGGAGCATCGTAAACGCGGGCAAAGATGCATATATGGTTGCATTTGCTGGGCAGAAATATGCAGCAAGGTCACTACCTATTATGTTTGCTGACAACAGTCACACGATTACTAGTTTCACTTTGGTTCTTGAATTTCAAGAGGGAACCCTTCAAAACTTGTATTGGAAGAGTTTTGGTTGTAATGCATGTCCTAGTGGAAGCATTTGCCTGAACAATCAAGACTGTGCAGTTCCAAACACAGAGTGTCAAAAGAATGGGGGGAGTGCCTGCAACTTGGGAATACAGTTGGCATTCTCAGGGACTGACAAGAATCTCGATGCTCTTAATTCTTGGTATGAAGCGCAAAATCTACGGCAGTACTCCCTCTATGGTCTATTCTCCAATCTTCGTGACTCCATCATCGGGCCATATGAAAATCTCTTTTAAGTCTACATATTTCCAGGTTGTATGCATGGGAGGGAGACTGTACCCATTTGACTGTTATTTGTGAGTTTAAATGTCTTTCATCTTCACATTCAAAATCCCCAACAACTTGTCTATTTCTGTTTAGTCTGAAGTTATTGACTGAGGTTTTTCCACTTAACAAGACATGTAATTGTGTTGATCCTACAGTGAGGAAATCACGGTATGCAAAATCACATAGGTACATTAAATTGAGCGAAACACTCACAATGACATAAAAAAATGTAGGTCATCAGTCCCCAATTAAAAGGCTATAAAAGAGATTGAAAGTTC
>Glyma11g13240.1 sequence type=CDS gene model=Glyma11g13240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCATGCTTTTGAAGATGGATGAAGTTTTTGCCATGTCCAAGATGAGGAAAGCAGATTTGGTGAAACGGGTGGTGATCATTGCCGTGATGGCTATTGCAGATGCAGCTGATACAAATGATGTTTATAGTCCATGTCTTGATGCTAAAGTTCAGAGAGGAGATGGTTTTACATTCGGTATTGCATTTTCAGACAAGGAATTTTTCTCCCAAGGTAATGGTCCGCAGCTTTCGCCTTGCGACAAACGCCTAGACCTCGCAAACAAAGGAGCACAGCTTTCTGTTTTCAGGCCGACGGTTGATGAGATCTCACTGCTCACCATCAACAGGAGCATCGTAAACGCGGGCAAAGATGCATATATGGTTGCATTTGCTGGGCAGAAATATGCAGCAAGGTCACTACCTATTATGTTTGCTGACAACAGTCACACGATTACTAGTTTCACTTTGGTTCTTGAATTTCAAGAGGGAACCCTTCAAAACTTGTATTGGAAGAGTTTTGGTTGTAATGCATGTCCTAGTGGAAGCATTTGCCTGAACAATCAAGACTGTGCAGTTCCAAACACAGAGTGTCAAAAGAATGGGGGGAGTGCCTGCAACTTGGGAATACAGTTGGCATTCTCAGGGACTGACAAGAATCTCGATGCTCTTAATTCTTGGTATGAAGCGCAAAATCTACGGCAGTACTCCCTCTATGGTCTATTCTCCAATCTTCGTGACTCCATCATCGGGCCATATGAAAATCTCTTTTAA >Glyma11g13240.2 sequence type=CDS gene model=Glyma11g13240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCATGCTTTTGAAGATGGATGAAGTTTTTGCCATGTCCAAGATGAGGAAAGCAGATTTGGTGAAACGGGTGGTGATCATTGCCGTGATGGCTATTGCAGATGCAGCTGATACAAATGATGTTTATAGTCCATGTCTTGATGCTAAAGTTCAGAGAGGAGATGGTTTTACATTCGGTATTGCATTTTCAGACAAGGAATTTTTCTCCCAAGGTAATGGTCCGCAGCTTTCGCCTTGCGACAAACGCCTAGACCTCGCAAACAAAGGAGCACAGCTTTCTGTTTTCAGGCCGACGGTTGATGAGATCTCACTGCTCACCATCAACAGGAGCATCGTAAACGCGGGCAAAGATGCATATATGGTTGCATTTGCTGGGCAGAAATATGCAGCAAGGTCACTACCTATTATGTTTGCTGACAACAGTCACACGATTACTAGTTTCACTTTGGTTCTTGAATTTCAAGAGGGAACCCTTCAAAACTTGTATTGGAAGAGTTTTGGTTGTAATGCATGTCCTAGTGGAAGCATTTGCCTGAACAATCAAGACTGTGCAGTTCCAAACACAGAGTGTCAAAAGAATGGGGGGAGTGCCTGCAACTTGGGAATACAGTTGGCATTCTCAGGGACTGACAAGAATCTCGATGCTCTTAATTCTTGGTATGAAGCGCAAAATCTACGGCAGTACTCCCTCTATGGTCTATTCTCCAATCTTCGTGACTCCATCATCGGGCCATATGAAAATCTCTTTTAA
>Glyma11g13240.1 sequence type=predicted peptide gene model=Glyma11g13240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIMLLKMDEVFAMSKMRKADLVKRVVIIAVMAIADAADTNDVYSPCLDAKVQRGDGFTFGIAFSDKEFFSQGNGPQLSPCDKRLDLANKGAQLSVFRPTVDEISLLTINRSIVNAGKDAYMVAFAGQKYAARSLPIMFADNSHTITSFTLVLEFQEGTLQNLYWKSFGCNACPSGSICLNNQDCAVPNTECQKNGGSACNLGIQLAFSGTDKNLDALNSWYEAQNLRQYSLYGLFSNLRDSIIGPYENLF* >Glyma11g13240.2 sequence type=predicted peptide gene model=Glyma11g13240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIMLLKMDEVFAMSKMRKADLVKRVVIIAVMAIADAADTNDVYSPCLDAKVQRGDGFTFGIAFSDKEFFSQGNGPQLSPCDKRLDLANKGAQLSVFRPTVDEISLLTINRSIVNAGKDAYMVAFAGQKYAARSLPIMFADNSHTITSFTLVLEFQEGTLQNLYWKSFGCNACPSGSICLNNQDCAVPNTECQKNGGSACNLGIQLAFSGTDKNLDALNSWYEAQNLRQYSLYGLFSNLRDSIIGPYENLF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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