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Report for Sequence Feature Glyma11g13060

Feature Type:gene_model
Chromosome:Gm11
Start:9315782
stop:9318899
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g13060
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G50830AT Annotation by Michelle Graham. TAIR10: cold-regulated 413-plasma membrane 2 | chr3:18894109-18895355 REVERSE LENGTH=203 SoyBaseE_val: 2.00E-80ISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF05562PFAM Cold acclimation protein WCOR413 JGI ISS
UniRef100_G7JEZ7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cold acclimation protein COR413-PM1 n=1 Tax=Medicago truncatula RepID=G7JEZ7_MEDTR SoyBaseE_val: 3.00E-94ISS
UniRef100_I1LJJ2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJJ2_SOYBN SoyBaseE_val: 5.00E-127ISS

Expression Patterns of Glyma11g13060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g13060
ParalogEvidenceComments
Glyma12g05150 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g13060 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g122600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g13060
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma11g13060
>Glyma11g13060.2   sequence type=transcript   gene model=Glyma11g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTGACTACACTTAATAAAAAATACATGTAGATAGATACCGGAATTTTGTTGGTTGTAGGAGATTTCTTACTCGATATTGGAAAAGAAGAGTTTAGAGAAAGCAAGAGCAGCTGGTGTATCTATCTCTCTGTGTTCATTATTGGTAAAGCATTAATCTCCACGTGGCCTTTCCTTATCATGTGCAATTGTTGTGCATATAGATAAGCACATCCAAATGTCTGCTTTGACTTAGTTTCATACACTCCCTCCTGTTTGATTACGAAAATGTGGAAGAGAAGGGGATTTGAAGAAGAAGCAGTTCAATTGATAAACTCAGATTTCAGAGACCTAAGTCTAGCTGGCATAGGCTTTGGAGCCTCTTTCTTCGGATTCTTTGCTGCCATTGCTGCTATGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGACTTTTCATTCCTAGACACTTCCCTGATTGGCTGGAATTGCCAGGTGCTTTGATTCTTCTTATCGTCGTAGCTCCTTCTCTAATTGCAAGCACTTTTAGAGACAACATTGTTGGGGTGGTGGTGTGCCTCATCATTGCATGCTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCGTATCAAATTCCATCGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCACTGGTTGTCATACTTTTTTAGGCACCACCATTTGGACTTGTTGATTCGTGTGAATTAAACCAATTGTTTTCTGTACCATTCATTTGTTGGAACTTGATATCTATAAACACCCCGCCATTGTTTTGCGATTCATCTTTGTCCTAAAGTTAGCATGTGTAAAAAAGTGGAATAAAATCTCAGTTGTAGTCTTCTGGTTTCGTAGAATGTAAAAAAAACAAAATATGAAGAGGATTGGTGTGGTGTCTTTCTAGCTGTCGTGTATTCACAAATCATGTGTAATTTGGGAAATCATTGTATTTTTACCTGTGGGGTATAATATAAATTTACATTTGTTGTTGCTCTGAGTTATTACAGCATT
Coding sequences of Glyma11g13060
>Glyma11g13060.1   sequence type=CDS   gene model=Glyma11g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAAGAGAAGGGGATTTGAAGAAGAAGCAGTTCAATTGATAAACTCAGATTTCAGAGACCTAAGTCTAGCTGGCATAGGCTTTGGAGCCTCTTTCTTCGGATTCTTTGCTGCCATTGCTGCTATTTATCTGTTGATTTTGGATCGTACAAACTGGAAGACAAATATTCTCACAGCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAATTTTCGACGTCTTCAGGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGACTTTTCATTCCTAGACACTTCCCTGATTGGCTGGAATTGCCAGGTGCTTTGATTCTTCTTATCGTCGTAGCTCCTTCTCTAATTGCAAGCACTTTTAGAGACAACATTGTTGGGGTGGTGGTGTGCCTCATCATTGCATGCTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCGTATCAAATTCCATCGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCACTGGTTGTCATACTTTTTTAG

>Glyma11g13060.2   sequence type=CDS   gene model=Glyma11g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAAGAGAAGGGGATTTGAAGAAGAAGCAGTTCAATTGATAAACTCAGATTTCAGAGACCTAAGTCTAGCTGGCATAGGCTTTGGAGCCTCTTTCTTCGGATTCTTTGCTGCCATTGCTGCTATGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGACTTTTCATTCCTAGACACTTCCCTGATTGGCTGGAATTGCCAGGTGCTTTGATTCTTCTTATCGTCGTAGCTCCTTCTCTAATTGCAAGCACTTTTAGAGACAACATTGTTGGGGTGGTGGTGTGCCTCATCATTGCATGCTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCGTATCAAATTCCATCGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCACTGGTTGTCATACTTTTTTAG
Predicted protein sequences of Glyma11g13060
>Glyma11g13060.1   sequence type=predicted peptide   gene model=Glyma11g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWKRRGFEEEAVQLINSDFRDLSLAGIGFGASFFGFFAAIAAIYLLILDRTNWKTNILTALLIPYIFFSLPSLIFDVFRGELGKWIAAVAVVLRLFIPRHFPDWLELPGALILLIVVAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGVSNSIGIILLLVYPIWALVVILF*

>Glyma11g13060.2   sequence type=predicted peptide   gene model=Glyma11g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWKRRGFEEEAVQLINSDFRDLSLAGIGFGASFFGFFAAIAAMGELGKWIAAVAVVLRLFIPRHFPDWLELPGALILLIVVAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGVSNSIGIILLLVYPIWALVVILF*






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