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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G49430 | AT | Annotation by Michelle Graham. TAIR10: long-chain acyl-CoA synthetase 2 | chr1:18291188-18295641 FORWARD LENGTH=665 | SoyBase | E_val: 0 | ISS |
| GO:0001676 | GO-bp | Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0002213 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to insect | SoyBase | N/A | ISS |
| GO:0006631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010025 | GO-bp | Annotation by Michelle Graham. GO Biological Process: wax biosynthetic process | SoyBase | N/A | ISS |
| GO:0010143 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cutin biosynthetic process | SoyBase | N/A | ISS |
| GO:0010311 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root formation | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004467 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: long-chain fatty acid-CoA ligase activity | SoyBase | N/A | ISS |
| GO:0031957 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: very long-chain fatty acid-CoA ligase activity | SoyBase | N/A | ISS |
| KOG1256 | KOG | Long-chain acyl-CoA synthetases (AMP-forming) | JGI | ISS | |
| PTHR24096 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF00501 | PFAM | AMP-binding enzyme | JGI | ISS | |
| UniRef100_B9RZF1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Acyl CoA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RZF1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C56F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C56F related cluster n=1 Tax=unknown RepID=UPI000233C56F | SoyBase | E_val: 0 | ISS |
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Glyma11g13050 not represented in the dataset |
Glyma11g13050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g05140 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g122500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g13050.2 sequence type=transcript gene model=Glyma11g13050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTCTTAGCAGTTTCGATGATTCCCTATGCAGGGACACGACAACGAGGTGCCCCAGCAACCCAATGCTGGGTCGGCGTCAAAAATCCGATTCCAAGGTGGGTCCCTATCAATGGATCACATATCAGGAGGCTTATGATGCTGCCATACGAATGGGTTCCGCCATGAGAAGCCGTGGTGTCAATCCTGGATACCGTTGTGGCATATATGGGTCCAACTGCCCCGAATGGATAATTGCAATGCAGGCTTGCAATAGCTATGCAGTAACCTATGTCCCATTATATGACACCCTGGGTCCTAATGCCGTGGAGTTTATCATAAACCATGCTGAAGTTTCGATTGCATTTGTACAGGATAGCAAGATTCCTTCTGTTTTGTCATGCCTTGATCGGTGGTCAAGTCTTAAAACTATTGTGAGTTTTGGTAATGTTTCAACCACACAAAAGAAGGAAGCTGAGGAGCTTGGTGCATCTTGCTTCTCGTGGGAAGAGTTTCTCCAGATGGGAAATATCGATTTAGACCTTCCACCGAAAAAGAAGACTAACATCTGCACAATAATGTACACAAGTGGAACAACAGGCGAACCCAAAGGCGTCATTATTAAGAATGAGGCTTTCATGACTCAAGTGTTGTCTATTGACCAAATACTTAATTTAACTGACAGAGTGGGAACAGAAGACGACGTGTACTTTTCTTTCCTTCCTCTTGCTCATGTATATGACCAGATAATGGAGACCTATTGCATTTATAAGGGCTCCTCAATTGGATTTTGGCAAGGCGATGTTGGATTCTTAATGGAAGATATTCTGGCACTGAAACCAACTCTATTTTGTGGTGTTCCTAGAGTTTATGATCGTGTTTATGCTTGTATCAGTAGCAAAATTTCATCTGGAGGAGCACTGCAAAGTACATTGTTTCAATATGCATATAACTACAAGTTGGGATATCTGGAGAAGGGTCTTCCCCAAGACAAAGCAGCACCTTTGTTTGATAAGCTTGTGTTTGATAAGATAAAACAAGCATTAGGTGGACGGGTTCGCCTCCTATTATCAGGAGCTGCTCCTTTGCCTAGGCATGTGGAGGAGTTTTTGAGGGTCACTTTTGGAGCTACTATGTCACAAGGATACGGTCTTACCGAAAGTTGTGGTGGGTGTTTCACTGGAATAAGTAATGTGTTTTCTATGATGGGAACAATTGGAGTCCCTATGACAACCATTGAGGCCAGGCTTGAATCTGTGCCAGAGATGGGGTATGATGCACTCTCCAGTGAAGCCCGGGGAGAAATTTGCCTTAGAGGGAATACCTTGTTCTCTGGTTACCACAAGCATCAAGATCTTACTGAAGAGGTTATGGTTGATGGTTGGTTTCATACAGGTGACATTGGAGAATGGCAGCCAAATGGAGCCATGAAAATTATTGATAGAAAAAAGAATATCTTTAAGTTGTCTCAAGGAGAATATGTTGCCGTGGAGAATATTGAAAACAAATACTTACAGTGCCCCCTTATAACATCGATTTGGGTCCATGGAAACAGTTTTGAATCTTTCTTGGTGGCAGTGGTGGTCCCTGAAAGAAAGGGCCTTGAGTATTGGGCAGTGAAGCATAATTCTACAGATGATTTCAAATCTTTATGTGAAAATCCAAAGGCAAGAAAATACATTTTGGATGAGCTCAACAACACTGGTCAGAAACACCAACTTAGAGGTTTTGAGCTGCTAAAAGCAGTTCATTTGGAACCAATTCCCTTTGACATGGAGAGAGATCTGATAACTCCAACATTCAAGTTGAAGAGACCGCAATTGCTCAAGCAGTATAAGGAATGTATTGATCAACTATACAAGGAAGCGAAGGCATAGATGGTGTGAGCCAGGTGTCTAACGGGGATTATATGCAATTATACTGATTCCCGACACAGTTTCCACAGAATCCATTCGAATTTTTTGTACACTTTGGTTCATTGAGTGAAGTGAAAAGCTACAAACAAAACCTTACATCGAAATGGCAACTGAGCATATCCACTCTGCATTCTTAAAAAGATTACAAAATGATAGTTGGAAATTTTTATAAGCTTGATATTTCGTGGTCTTGCAACTTCTGTTTTTGCTCCATTTTCTTTTATTAAGCTATTTTGGGCCTAGTGTTTTGTTCCCTCATCAAGTCTATAATTTTAGCCAATAGAATACAGTTGATTAGGGTAATGCTGAACCTGTATTTTTTTTCATGCTTGTTAACAATGCTTTGATTATATGTCGATAATGAAAAGTTGAAGAGATGGCGGAAATTACACTTTTGAAGTGTGATAAAGATAAAAGTAGCATTTTAAAGGACTAAAAAAGTCCAACTTAAAAAGTTGCAACTACTTTTAAAGTTGCTTTACTTAGCATGACACCTCTGCAAGTTCCAAAACCCTCTGGGGTCTTGACATTCTATTTGGCATATTTGAGTTTTCATGTTCAGAGGAATTCTGTTATAGTTGCTAGGATTGCATTTGCTGGGAAACAAA
>Glyma11g13050.1 sequence type=CDS gene model=Glyma11g13050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGGAGTTGTACTCTGTGAAGGTGGAAGAGGCAAGGCCTGCAACTCATGAAAAGCCATCAGCAGGTCCTGTCTACAGGTGCATTTATGCCAAGGATGCTTTGACTCAGTTACCTTCTCATTTTCAATCTCCATGGCAATTCTTCAGGGACACGACAACGAGGTGCCCCAGCAACCCAATGCTGGGTCGGCGTCAAAAATCCGATTCCAAGGTGGGTCCCTATCAATGGATCACATATCAGGAGGCTTATGATGCTGCCATACGAATGGGTTCCGCCATGAGAAGCCGTGGTGTCAATCCTGGATACCGTTGTGGCATATATGGGTCCAACTGCCCCGAATGGATAATTGCAATGCAGGCTTGCAATAGCTATGCAGTAACCTATGTCCCATTATATGACACCCTGGGTCCTAATGCCGTGGAGTTTATCATAAACCATGCTGAAGTTTCGATTGCATTTGTACAGGATAGCAAGATTCCTTCTGTTTTGTCATGCCTTGATCGGTGGTCAAGTCTTAAAACTATTGTGAGTTTTGGTAATGTTTCAACCACACAAAAGAAGGAAGCTGAGGAGCTTGGTGCATCTTGCTTCTCGTGGGAAGAGTTTCTCCAGATGGGAAATATCGATTTAGACCTTCCACCGAAAAAGAAGACTAACATCTGCACAATAATGTACACAAGTGGAACAACAGGCGAACCCAAAGGCGTCATTATTAAGAATGAGGCTTTCATGACTCAAGTGTTGTCTATTGACCAAATACTTAATTTAACTGACAGAGTGGGAACAGAAGACGACGTGTACTTTTCTTTCCTTCCTCTTGCTCATGTATATGACCAGATAATGGAGACCTATTGCATTTATAAGGGCTCCTCAATTGGATTTTGGCAAGGCGATGTTGGATTCTTAATGGAAGATATTCTGGCACTGAAACCAACTCTATTTTGTGGTGTTCCTAGAGTTTATGATCGTGTTTATGCTTGTATCAGTAGCAAAATTTCATCTGGAGGAGCACTGCAAAGTACATTGTTTCAATATGCATATAACTACAAGTTGGGATATCTGGAGAAGGGTCTTCCCCAAGACAAAGCAGCACCTTTGTTTGATAAGCTTGTGTTTGATAAGATAAAACAAGCATTAGGTGGACGGGTTCGCCTCCTATTATCAGGAGCTGCTCCTTTGCCTAGGCATGTGGAGGAGTTTTTGAGGGTCACTTTTGGAGCTACTATGTCACAAGGATACGGTCTTACCGAAAGTTGTGGTGGGTGTTTCACTGGAATAAGTAATGTGTTTTCTATGATGGGAACAATTGGAGTCCCTATGACAACCATTGAGGCCAGGCTTGAATCTGTGCCAGAGATGGGGTATGATGCACTCTCCAGTGAAGCCCGGGGAGAAATTTGCCTTAGAGGGAATACCTTGTTCTCTGGTTACCACAAGCATCAAGATCTTACTGAAGAGGTTATGGTTGATGGTTGGTTTCATACAGGTGACATTGGAGAATGGCAGCCAAATGGAGCCATGAAAATTATTGATAGAAAAAAGAATATCTTTAAGTTGTCTCAAGGAGAATATGTTGCCGTGGAGAATATTGAAAACAAATACTTACAGTGCCCCCTTATAACATCGATTTGGGTCCATGGAAACAGTTTTGAATCTTTCTTGGTGGCAGTGGTGGTCCCTGAAAGAAAGGGCCTTGAGTATTGGGCAGTGAAGCATAATTCTACAGATGATTTCAAATCTTTATGTGAAAATCCAAAGGCAAGAAAATACATTTTGGATGAGCTCAACAACACTGGTCAGAAACACCAACTTAGAGGTTTTGAGCTGCTAAAAGCAGTTCATTTGGAACCAATTCCCTTTGACATGGAGAGAGATCTGATAACTCCAACATTCAAGTTGAAGAGACCGCAATTGCTCAAGCAGTATAAGGAATGTATTGATCAACTATACAAGGAAGCGAAGGCATAG >Glyma11g13050.2 sequence type=CDS gene model=Glyma11g13050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGGGTCGGCGTCAAAAATCCGATTCCAAGGTGGGTCCCTATCAATGGATCACATATCAGGAGGCTTATGATGCTGCCATACGAATGGGTTCCGCCATGAGAAGCCGTGGTGTCAATCCTGGATACCGTTGTGGCATATATGGGTCCAACTGCCCCGAATGGATAATTGCAATGCAGGCTTGCAATAGCTATGCAGTAACCTATGTCCCATTATATGACACCCTGGGTCCTAATGCCGTGGAGTTTATCATAAACCATGCTGAAGTTTCGATTGCATTTGTACAGGATAGCAAGATTCCTTCTGTTTTGTCATGCCTTGATCGGTGGTCAAGTCTTAAAACTATTGTGAGTTTTGGTAATGTTTCAACCACACAAAAGAAGGAAGCTGAGGAGCTTGGTGCATCTTGCTTCTCGTGGGAAGAGTTTCTCCAGATGGGAAATATCGATTTAGACCTTCCACCGAAAAAGAAGACTAACATCTGCACAATAATGTACACAAGTGGAACAACAGGCGAACCCAAAGGCGTCATTATTAAGAATGAGGCTTTCATGACTCAAGTGTTGTCTATTGACCAAATACTTAATTTAACTGACAGAGTGGGAACAGAAGACGACGTGTACTTTTCTTTCCTTCCTCTTGCTCATGTATATGACCAGATAATGGAGACCTATTGCATTTATAAGGGCTCCTCAATTGGATTTTGGCAAGGCGATGTTGGATTCTTAATGGAAGATATTCTGGCACTGAAACCAACTCTATTTTGTGGTGTTCCTAGAGTTTATGATCGTGTTTATGCTTGTATCAGTAGCAAAATTTCATCTGGAGGAGCACTGCAAAGTACATTGTTTCAATATGCATATAACTACAAGTTGGGATATCTGGAGAAGGGTCTTCCCCAAGACAAAGCAGCACCTTTGTTTGATAAGCTTGTGTTTGATAAGATAAAACAAGCATTAGGTGGACGGGTTCGCCTCCTATTATCAGGAGCTGCTCCTTTGCCTAGGCATGTGGAGGAGTTTTTGAGGGTCACTTTTGGAGCTACTATGTCACAAGGATACGGTCTTACCGAAAGTTGTGGTGGGTGTTTCACTGGAATAAGTAATGTGTTTTCTATGATGGGAACAATTGGAGTCCCTATGACAACCATTGAGGCCAGGCTTGAATCTGTGCCAGAGATGGGGTATGATGCACTCTCCAGTGAAGCCCGGGGAGAAATTTGCCTTAGAGGGAATACCTTGTTCTCTGGTTACCACAAGCATCAAGATCTTACTGAAGAGGTTATGGTTGATGGTTGGTTTCATACAGGTGACATTGGAGAATGGCAGCCAAATGGAGCCATGAAAATTATTGATAGAAAAAAGAATATCTTTAAGTTGTCTCAAGGAGAATATGTTGCCGTGGAGAATATTGAAAACAAATACTTACAGTGCCCCCTTATAACATCGATTTGGGTCCATGGAAACAGTTTTGAATCTTTCTTGGTGGCAGTGGTGGTCCCTGAAAGAAAGGGCCTTGAGTATTGGGCAGTGAAGCATAATTCTACAGATGATTTCAAATCTTTATGTGAAAATCCAAAGGCAAGAAAATACATTTTGGATGAGCTCAACAACACTGGTCAGAAACACCAACTTAGAGGTTTTGAGCTGCTAAAAGCAGTTCATTTGGAACCAATTCCCTTTGACATGGAGAGAGATCTGATAACTCCAACATTCAAGTTGAAGAGACCGCAATTGCTCAAGCAGTATAAGGAATGTATTGATCAACTATACAAGGAAGCGAAGGCATAG
>Glyma11g13050.1 sequence type=predicted peptide gene model=Glyma11g13050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPELYSVKVEEARPATHEKPSAGPVYRCIYAKDALTQLPSHFQSPWQFFRDTTTRCPSNPMLGRRQKSDSKVGPYQWITYQEAYDAAIRMGSAMRSRGVNPGYRCGIYGSNCPEWIIAMQACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQDSKIPSVLSCLDRWSSLKTIVSFGNVSTTQKKEAEELGASCFSWEEFLQMGNIDLDLPPKKKTNICTIMYTSGTTGEPKGVIIKNEAFMTQVLSIDQILNLTDRVGTEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGDVGFLMEDILALKPTLFCGVPRVYDRVYACISSKISSGGALQSTLFQYAYNYKLGYLEKGLPQDKAAPLFDKLVFDKIKQALGGRVRLLLSGAAPLPRHVEEFLRVTFGATMSQGYGLTESCGGCFTGISNVFSMMGTIGVPMTTIEARLESVPEMGYDALSSEARGEICLRGNTLFSGYHKHQDLTEEVMVDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENIENKYLQCPLITSIWVHGNSFESFLVAVVVPERKGLEYWAVKHNSTDDFKSLCENPKARKYILDELNNTGQKHQLRGFELLKAVHLEPIPFDMERDLITPTFKLKRPQLLKQYKECIDQLYKEAKA* >Glyma11g13050.2 sequence type=predicted peptide gene model=Glyma11g13050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLGRRQKSDSKVGPYQWITYQEAYDAAIRMGSAMRSRGVNPGYRCGIYGSNCPEWIIAMQACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQDSKIPSVLSCLDRWSSLKTIVSFGNVSTTQKKEAEELGASCFSWEEFLQMGNIDLDLPPKKKTNICTIMYTSGTTGEPKGVIIKNEAFMTQVLSIDQILNLTDRVGTEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGDVGFLMEDILALKPTLFCGVPRVYDRVYACISSKISSGGALQSTLFQYAYNYKLGYLEKGLPQDKAAPLFDKLVFDKIKQALGGRVRLLLSGAAPLPRHVEEFLRVTFGATMSQGYGLTESCGGCFTGISNVFSMMGTIGVPMTTIEARLESVPEMGYDALSSEARGEICLRGNTLFSGYHKHQDLTEEVMVDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENIENKYLQCPLITSIWVHGNSFESFLVAVVVPERKGLEYWAVKHNSTDDFKSLCENPKARKYILDELNNTGQKHQLRGFELLKAVHLEPIPFDMERDLITPTFKLKRPQLLKQYKECIDQLYKEAKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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