Glyma11g12960 - SoyBase

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Report for Sequence Feature Glyma11g12960

Feature Type:	gene_model
Chromosome:	Gm11
Start:	9270627
stop:	9272191
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g12960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G16060	AT	Annotation by Michelle Graham. TAIR10: hemoglobin 1 \| chr2:6982782-6983522 REVERSE LENGTH=160	SoyBase	E_val: 1.00E-77	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0015671	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxygen transport	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0019825	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
PTHR22924	Panther	LEGHEMOGLOBIN	JGI		ISS
PTHR22924:SF4	Panther	NON-SYMBIOTIC HEMOGLOBIN (RHB)	JGI		ISS
PF00042	PFAM	Globin	JGI		ISS
UniRef100_I1LJI1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJI1_SOYBN	SoyBase	E_val: 2.00E-108	ISS
UniRef100_Q42785	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nonsymbiotic hemoglobin n=3 Tax=Glycine max RepID=Q42785_SOYBN	SoyBase	E_val: 6.00E-91	ISS

Expression Patterns of Glyma11g12960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g12960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g121700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g12960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g12960

Limit To All Plant Sequences

>Glyma11g12960.2   sequence type=transcript   gene model=Glyma11g12960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGAAAGCTCAATCAAAGAACGTGGCAACCAAAAGCATGGGAATGCCTTCCCATTACATTGAAGGGGCAACCTCATCTTGAAGGGGAAATATCTCACTACAAAACCAAGCTACAACATCAACCACTGCCATCATATGACAATCATATATACCAATACTAGCTAGTAGCTAGAGAGTAGAGAACATGGAGGGCAAAGGTTTCACGGAAGAGCAAGAAGCTCTGGTGGTGAAATCATGGAACGAAATGAAGAAGAATTCTCAAGAACTCGGTCTTAAATTTTTCAAGAAAATATTGGAGATTGCTCCAGCAGCTCAGCAATTGTTCTCATTCTTGAAGGATTCAACTGTTCCTTTGGAGGAAAACCCCAAGCTCAAGCCCCATGCCATGGCTGTCTTTGTCATGGTAACAAAGTTGGCACTATTGGAGACCATAAAAGAAGCAGTGCCTGAAATGTGGTCACCAGCCATGAAGAATGCATGGGAAGAAGCTCATGATCAGCTGGCCGAAGCCATCAAATCTGAAATGAAGCCCTCTGATTAGACTCTAGTAGTTGCTTTCTCTCAAATTGAATAAGATTGATAGGGTGGTGGTGTTTGGGTCTGTGCTTCTCGTTTGTATGAATTTTAATAATGTATCTATGTTGCTATTGGGGTTGCTATGTCGGAAAGTGTTCACATTTTAACAATTCAGTTATTGAAGGTGATGTGAATTGTAAGGAAAGGGAAAATGATAAATGCATGGATGGTATGAATTGTTACAATTTTATTCTGTGTCTTTAGAATCCATTTGCTATATAAAATGAATCATCATTCATTCA

Coding sequences of Glyma11g12960

Limit To All Plant Sequences

>Glyma11g12960.1   sequence type=CDS   gene model=Glyma11g12960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGCAAAGGTTTCACGGAAGAGCAAGAAGCTCTGGTGGTGAAATCATGGAACGAAATGAAGAAGAATTCTCAAGAACTCGGTCTTAAATTTTTCAAGAAAATATTGGAGATTGCTCCAGCAGCTCAGCAATTGTTCTCATTCTTGAAGGATTCAACTGTTCCTTTGGAGGAAAACCCCAAGCTCAAGCCCCATGCCATGGCTGTCTTTGTCATGACGTGTGAATCAGCTGTTCAACTGAGGAAAGCTGGTAAAGTCACTGTGAGGGAATCAAACTTGAAAAGATTAGGTGCTACTCATTTTAAAGCCGGTGTAGCAGCTGAGCATTTCGAGGTAACAAAGTTGGCACTATTGGAGACCATAAAAGAAGCAGTGCCTGAAATGTGGTCACCAGCCATGAAGAATGCATGGGAAGAAGCTCATGATCAGCTGGCCGAAGCCATCAAATCTGAAATGAAGCCCTCTGATTAG

>Glyma11g12960.2   sequence type=CDS   gene model=Glyma11g12960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGCAAAGGTTTCACGGAAGAGCAAGAAGCTCTGGTGGTGAAATCATGGAACGAAATGAAGAAGAATTCTCAAGAACTCGGTCTTAAATTTTTCAAGAAAATATTGGAGATTGCTCCAGCAGCTCAGCAATTGTTCTCATTCTTGAAGGATTCAACTGTTCCTTTGGAGGAAAACCCCAAGCTCAAGCCCCATGCCATGGCTGTCTTTGTCATGGTAACAAAGTTGGCACTATTGGAGACCATAAAAGAAGCAGTGCCTGAAATGTGGTCACCAGCCATGAAGAATGCATGGGAAGAAGCTCATGATCAGCTGGCCGAAGCCATCAAATCTGAAATGAAGCCCTCTGATTAG

Predicted protein sequences of Glyma11g12960

Limit To All Plant Sequences

>Glyma11g12960.1   sequence type=predicted peptide   gene model=Glyma11g12960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGKGFTEEQEALVVKSWNEMKKNSQELGLKFFKKILEIAPAAQQLFSFLKDSTVPLEENPKLKPHAMAVFVMTCESAVQLRKAGKVTVRESNLKRLGATHFKAGVAAEHFEVTKLALLETIKEAVPEMWSPAMKNAWEEAHDQLAEAIKSEMKPSD*

>Glyma11g12960.2   sequence type=predicted peptide   gene model=Glyma11g12960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGKGFTEEQEALVVKSWNEMKKNSQELGLKFFKKILEIAPAAQQLFSFLKDSTVPLEENPKLKPHAMAVFVMVTKLALLETIKEAVPEMWSPAMKNAWEEAHDQLAEAIKSEMKPSD*

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