Glyma11g12920 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma11g12920

Feature Type:	gene_model
Chromosome:	Gm11
Start:	9232844
stop:	9236782
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g12920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34370	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr4:16434547-16437037 FORWARD LENGTH=597	SoyBase	E_val: 0	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009755	GO-bp	Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1815	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR11685	Panther	ARIADNE RING ZINC FINGER	JGI		ISS
PTHR11685:SF12	Panther	RING FINGER-RELATED	JGI		ISS
PF01485	PFAM	IBR domain	JGI		ISS
UniRef100_B9RZD6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein ariadne-1, putative n=1 Tax=Ricinus communis RepID=B9RZD6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LJH6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJH6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g12920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g12920

Paralog	Evidence	Comments
Glyma12g05050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g12920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g121300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g12920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g12920

Limit To All Plant Sequences

>Glyma11g12920.2   sequence type=transcript   gene model=Glyma11g12920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAACTTGCAAAGCTAGAAGAAAAGGTTCTCTCCCTCTCTCTCTTCTTCTCTTTCTCTGCGTGTGTGTTCGTGAGTGGAGTGGCGTATGTGTAGCTGCGCTCTCTATCGCCGGCGCTCTCGTCGGAATTTCCGTTATTGATTTTTCCGATCACCGGATTCGATCCAATCCCTAATCCCTAATCCCGCGATTCCATCAATTGAAAAAATTGAATAGCCATTGAACCGTTTCGTTTCGGGGGTAGCGGAGATGGACGTTTACGCGAGCAGCGACGAAGATTACCATTACGACTCCGACCACGAGGACTCCGTCGAGGCCTACGAAAACGACGAGAATTACGCCTTGCTCTCTTCCAAGGGCACCACTACTAAGGTGATTACAAAGGAATCACTGCTAGCTGCACAGAAGGAGGATTTGCGCAGAGTGATGGACATGCTATCGGTGAGAGAGCAACATGCTCGGACGCTGCTTATTTTTCATCGTTGGGATGTGGAGAATCTGTTTGAAGTGTTAGTAGACAAGGGGAAATCATTTCTCTTTGCTGAAGCTGGTGTTAGTGTGGATGAACATCGCAACTCTGACTCACCTGTTCCTCCTGCATTCATGTGCTACATCTGTATGGAGGAAGTTCCTAGTAGCAAAACAACGAGAATGGACTGCGGTCACTGCTTTTGCAACGGCTGTTGGATAGAGCACTTTATTGTCAAGATAAATGAGGGTCAAAGTAAGCGCATTAGATGCATGGAACACAAGTGCAATTCCATATGTGATGATGCCGTTGTAAGAACTCTACTCAGTAGAGAGCACCCTCATATGGCAGAGAAATATGAACGCTTTCTGCTTGAATCTTACATTGAAGACAATAAGAGAGTTAAATGGTGCCCCAGCACACCTCATTGTGGGAATGCAATACGGGTCGAGGATGATGAACTGTGTGAGGTAGAATGTTCATGTGGTGTACAATTTTGTTTTAGTTGTTTGTCAGAAGCACACTCCCCTTGTTCATGTCTGATGTGGGAGCTTTGGGCTAAGAAGTGCCGAGATGAATCAGAAACAGTTAATTGGATAACTGTTCATACAAAACCATGTCCAAAGTGTCACAAACCAGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGCCAAGCATTTTGTTGGTTGTGTGGTGGAGCTACTGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGATACAAAGAGCAAGAAAAGACAGCTGAACGTGCAAAGAGGGATCTATATCGTTATATGCATTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGATTGAAAGTAAACTGAAAGAGACTATACAAGGGAAGATTGCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGAGTCCTATCATATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGATGAAATGACAGATGCTCAACGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAACAGCTTGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGATAAGGTTGTTGAGATAAGGATGCAGATACTCAACCTTTCAACAATTATTGACAAACTTTGTCAAAAAATGTATGAATGCATTGAGAATGATCTATTGGGTTCTCTCAATCTTGGCATTCATAGTATTGCTCCATACAAGTCAAAGGGCATCGAGAGGGCATCAGAACTTTCAGTTGGCTGGAACAACAAAGTCAATAATACTGTTTGACTTTGTGGATGCTCATCAGAAAATGTTACTGAGTGAAAAGGATTATTGTATATATGCTGCAAGCGTAGGTGTAACAGAAGAACTTGATCGACCATCTGGATCAGGGAGTTCAGACGATAATGGATGTTCTTCTCGTAAACGTGCTAGAAAAGAGGGTCTTGGAGGTGGTGGTTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGACTTTGAAGGACACCTTATTATACGTACAGGCGTACAGGTCTAACAACATAAAATTGCTTTGCTTTGCTGCCTTTGGAAGGAAGGAATTAATCTTTTTGGATTTCATACCCCATTTGCTTTCTCATATCTTTCTTTTAGCCAGCCATGTCTCTGCTGAGATAAAAGATATGTTTCCAAGGTTTCTTATTCCTATGCCATCTACCTTTCTGTTTGAAATCCTAGCGCTGTATATAGATAGCCTTGGGGCATTTATTTGCTAGTAGTTTTATGTAAATGGCTACCTTGAGGACAACTAGGATGCTTTTATTCCTATTTTATGGAGTTATAGGTGGAGGTAACTTCACTGATTTTTCTTCTCTCATGTTTACACTATTTTAACTTGTTTAAGTTACAATTTTCAAGCGATATACTTTCGACTATTCTTATTCGTTTCGTTACTCGATCGATCCTTGCACTCGTTGCAATCTCTTGGCCTTTAATTATGTTAAC

Coding sequences of Glyma11g12920

Limit To All Plant Sequences

>Glyma11g12920.1   sequence type=CDS   gene model=Glyma11g12920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTTTACGCGAGCAGCGACGAAGATTACCATTACGACTCCGACCACGAGGACTCCGTCGAGGCCTACGAAAACGACGAGAATTACGCCTTGCTCTCTTCCAAGGGCACCACTACTAAGGTGATTACAAAGGAATCACTGCTAGCTGCACAGAAGGAGGATTTGCGCAGAGTGATGGACATGCTATCGGTGAGAGAGCAACATGCTCGGACGCTGCTTATTTTTCATCGTTGGGATGTGGAGAATCTGTTTGAAGTGTTAGTAGACAAGGGGAAATCATTTCTCTTTGCTGAAGCTGGTGTTAGTGTGGATGAACATCGCAACTCTGACTCACCTGTTCCTCCTGCATTCATGTGCTACATCTGTATGGAGGAAGTTCCTAGTAGCAAAACAACGAGAATGGACTGCGGTCACTGCTTTTGCAACGGCTGTTGGATAGAGCACTTTATTGTCAAGATAAATGAGGGTCAAAGTAAGCGCATTAGATGCATGGAACACAAGTGCAATTCCATATGTGATGATGCCGTTGTAAGAACTCTACTCAGTAGAGAGCACCCTCATATGGCAGAGAAATATGAACGCTTTCTGCTTGAATCTTACATTGAAGACAATAAGAGAGTTAAATGGTGCCCCAGCACACCTCATTGTGGGAATGCAATACGGGTCGAGGATGATGAACTGTGTGAGGTAGAATGTTCATGTGGTGTACAATTTTGTTTTAGTTGTTTGTCAGAAGCACACTCCCCTTGTTCATGTCTGATGTGGGAGCTTTGGGCTAAGAAGTGCCGAGATGAATCAGAAACAGTTAATTGGATAACTGTTCATACAAAACCATGTCCAAAGTGTCACAAACCAGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGCCAAGCATTTTGTTGGTTGTGTGGTGGAGCTACTGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGATACAAAGAGCAAGAAAAGACAGCTGAACGTGCAAAGAGGGATCTATATCGTTATATGCATTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGATTGAAAGTAAACTGAAAGAGACTATACAAGGGAAGATTGCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGAGTCCTATCATATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGATGAAATGACAGATGCTCAACGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAACAGCTTGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGATAAGGTTGTTGAGATAAGGATGCAGATACTCAACCTTTCAACAATTATTGACAAACTTTGTCAAAAAATGTATGAATGCATTGAGAATGATCTATTGGGTTCTCTCAATCTTGGCATTCATAGTATTGCTCCATACAAGTCAAAGGGCATCGAGAGGGCATCAGAACTTTCAGTTGGCTGGAACAACAAAGTCAATAATACTGGTGTAACAGAAGAACTTGATCGACCATCTGGATCAGGGAGTTCAGACGATAATGGATGTTCTTCTCGTAAACGTGCTAGAAAAGAGGGTCTTGGAGGTGGTGGTTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGA

>Glyma11g12920.2   sequence type=CDS   gene model=Glyma11g12920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTTTACGCGAGCAGCGACGAAGATTACCATTACGACTCCGACCACGAGGACTCCGTCGAGGCCTACGAAAACGACGAGAATTACGCCTTGCTCTCTTCCAAGGGCACCACTACTAAGGTGATTACAAAGGAATCACTGCTAGCTGCACAGAAGGAGGATTTGCGCAGAGTGATGGACATGCTATCGGTGAGAGAGCAACATGCTCGGACGCTGCTTATTTTTCATCGTTGGGATGTGGAGAATCTGTTTGAAGTGTTAGTAGACAAGGGGAAATCATTTCTCTTTGCTGAAGCTGGTGTTAGTGTGGATGAACATCGCAACTCTGACTCACCTGTTCCTCCTGCATTCATGTGCTACATCTGTATGGAGGAAGTTCCTAGTAGCAAAACAACGAGAATGGACTGCGGTCACTGCTTTTGCAACGGCTGTTGGATAGAGCACTTTATTGTCAAGATAAATGAGGGTCAAAGTAAGCGCATTAGATGCATGGAACACAAGTGCAATTCCATATGTGATGATGCCGTTGTAAGAACTCTACTCAGTAGAGAGCACCCTCATATGGCAGAGAAATATGAACGCTTTCTGCTTGAATCTTACATTGAAGACAATAAGAGAGTTAAATGGTGCCCCAGCACACCTCATTGTGGGAATGCAATACGGGTCGAGGATGATGAACTGTGTGAGGTAGAATGTTCATGTGGTGTACAATTTTGTTTTAGTTGTTTGTCAGAAGCACACTCCCCTTGTTCATGTCTGATGTGGGAGCTTTGGGCTAAGAAGTGCCGAGATGAATCAGAAACAGTTAATTGGATAACTGTTCATACAAAACCATGTCCAAAGTGTCACAAACCAGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGCCAAGCATTTTGTTGGTTGTGTGGTGGAGCTACTGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGATACAAAGAGCAAGAAAAGACAGCTGAACGTGCAAAGAGGGATCTATATCGTTATATGCATTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGATTGAAAGTAAACTGAAAGAGACTATACAAGGGAAGATTGCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGAGTCCTATCATATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGATGAAATGACAGATGCTCAACGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAACAGCTTGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGATAAGGTTGTTGAGATAAGGATGCAGATACTCAACCTTTCAACAATTATTGACAAACTTTGTCAAAAAATGTATGAATGCATTGAGAATGATCTATTGGGTTCTCTCAATCTTGGCATTCATAGTATTGCTCCATACAAGTCAAAGGGCATCGAGAGGGCATCAGAACTTTCAGTTGGCTGGAACAACAAAGTCAATAATACTGTTTGA

Predicted protein sequences of Glyma11g12920

Limit To All Plant Sequences

>Glyma11g12920.1   sequence type=predicted peptide   gene model=Glyma11g12920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVYASSDEDYHYDSDHEDSVEAYENDENYALLSSKGTTTKVITKESLLAAQKEDLRRVMDMLSVREQHARTLLIFHRWDVENLFEVLVDKGKSFLFAEAGVSVDEHRNSDSPVPPAFMCYICMEEVPSSKTTRMDCGHCFCNGCWIEHFIVKINEGQSKRIRCMEHKCNSICDDAVVRTLLSREHPHMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGVQFCFSCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKDEMTDAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLNLGIHSIAPYKSKGIERASELSVGWNNKVNNTGVTEELDRPSGSGSSDDNGCSSRKRARKEGLGGGGFFDLNLPAEFVDRN*

>Glyma11g12920.2   sequence type=predicted peptide   gene model=Glyma11g12920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVYASSDEDYHYDSDHEDSVEAYENDENYALLSSKGTTTKVITKESLLAAQKEDLRRVMDMLSVREQHARTLLIFHRWDVENLFEVLVDKGKSFLFAEAGVSVDEHRNSDSPVPPAFMCYICMEEVPSSKTTRMDCGHCFCNGCWIEHFIVKINEGQSKRIRCMEHKCNSICDDAVVRTLLSREHPHMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGVQFCFSCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKDEMTDAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLNLGIHSIAPYKSKGIERASELSVGWNNKVNNTV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain