Report for Sequence Feature Glyma11g12910
Feature Type: gene_model
Chromosome: Gm11
Start: 9224071
stop: 9226860
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g12910
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G34360 AT
Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:16432011-16433752 FORWARD LENGTH=248
SoyBase E_val: 5.00E-117 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0008168 GO-mf
Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity
SoyBase N/A ISS
KOG1271
KOG
Methyltransferases
JGI ISS
PTHR12176 Panther
UNCHARACTERIZED
JGI ISS
PF08241 PFAM
Methyltransferase domain
JGI ISS
UniRef100_B9RZD5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine-dependent methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RZD5_RICCO
SoyBase E_val: 9.00E-121 ISS
UniRef100_I1LJH5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJH5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma11g12910
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma11g12910
Paralog Evidence Comments
Glyma12g05040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g12910 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g121200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g12910
Coding sequences of Glyma11g12910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g12910.1 sequence type=CDS gene model=Glyma11g12910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGATACGCCAACACCTTCAACTGCTTTGACCTACCTTAATCCTTCCTACTGGGACGAGAGGTTCTCGAAGGAGGAGCAATACGAGTGGTTCAAGGATTATTCCCATTTTCGCCACTTGATTCAACCCCATCTCACGCCCCATTCCGCTGTCCTGGAGCTTGGGTGTGGAAACTCACAAATGTGTGAACAGTTGCATAAGGATGGCACAACCAACATAACTTGCATTGACCTTTCACCTGTTGCAGTTCAAAACATGCAAAAACGGCTATTGTCCCGGGGATTCAAAGACATAAAAGTGCTGCAAGCTGATATGCTAGAGCTACCTTTTGAGGATGAATGTTTTGATTTGGTTATTGAGAAAGGAACTATGGATGTATTGTTCGTGGACAGTGGTGACCCATGGAATCCAAAGCCTGAAACTATATTCAAGGTCATGGCCACATTGAAAGGTGTTCACAGGGTTTTGAAAGCTGGTGGCACATTTATCTCAGTAACTTTTGGCCAGCCACATTTCAGGCGCCCTATATTTAATGCACCAGATTTCAACTGGTCTGTTGAGTGGACTACTTTTGGTGAAACCTTTCACTATTTTGTCTATGTTCTGAAGAAGGGACAGAGATCATCATATGATGATATTCCACCTGTTAAGAGGTTTGAAGCATCACCTATTAATTTACTTCATGAAGAGTTAGAAAGTGAAGATTTTGCTTTCCGGATCAATGTTGACGAGTTGAACTATTAG
Predicted protein sequences of Glyma11g12910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g12910.1 sequence type=predicted peptide gene model=Glyma11g12910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEDTPTPSTALTYLNPSYWDERFSKEEQYEWFKDYSHFRHLIQPHLTPHSAVLELGCGNSQMCEQLHKDGTTNITCIDLSPVAVQNMQKRLLSRGFKDIKVLQADMLELPFEDECFDLVIEKGTMDVLFVDSGDPWNPKPETIFKVMATLKGVHRVLKAGGTFISVTFGQPHFRRPIFNAPDFNWSVEWTTFGETFHYFVYVLKKGQRSSYDDIPPVKRFEASPINLLHEELESEDFAFRINVDELNY*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
