Glyma11g12900 - SoyBase

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Report for Sequence Feature Glyma11g12900

Feature Type:	gene_model
Chromosome:	Gm11
Start:	9215522
stop:	9220507
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g12900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18890	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr3:6511169-6514729 FORWARD LENGTH=641	SoyBase	E_val: 2.00E-162	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG1203	KOG	Predicted dehydrogenase	JGI		ISS
PTHR14194	Panther	NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED	JGI		ISS
PTHR14194:SF19	Panther	OS10G0100300 PROTEIN	JGI		ISS
PF05368	PFAM	NmrA-like family	JGI		ISS
UniRef100_Q8SKU2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein TIC 62, chloroplastic n=1 Tax=Pisum sativum RepID=TIC62_PEA	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C568	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C568 related cluster n=1 Tax=unknown RepID=UPI000233C568	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g12900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g12900

Paralog	Evidence	Comments
Glyma12g05030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g12900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g121100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g12900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g12900

Limit To All Plant Sequences

>Glyma11g12900.2   sequence type=CDS   gene model=Glyma11g12900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCTTTCTCCGTACAGTCACTCACCGCAACCACCATTCCCACCTCCTCTCTGTCACGTAGAGCTGCCACTGACAAACCTTCGGCCACCTCCCATGTTAACCTTTCCCATTTCACAAGGTACCCTTGTACCACAAAGCACAAAATTCGTTGCACCAGAGCTCAAGCTTCAGGTTCAACAAAATCTTGTACGGGTACTGCTGAGGGGATTTCTGAGAAAACAGATTCCAAGGATGACAACTTAGTATTTGTTGCTGGTGCTACTGGTAGAGTTGGTTCACGGACAGTGAGGGAGCTTATAAAGCTTGGATTTAGAGTCAGAGCCGGAGTGCGGAGTGCTCAGAGGGCCGGTGCATTAGTTCAGAGTGTTGAACAATTGAAGCTTGATGGTGCAAATGGAGGGGTACAAGCTGTAGAGAAGCTTGAAATTGTGGAATGTGATTTGGAGAAACCAGAAACAATTGGATCGGCGTTAGGGAATGCATCAACAGTTATATGTAGCATTGGTGCCAGTGAGAAGGAAGTTTTTGACATCACTGGACCCTTTCGAATAGATTATCTGGCCACCAAAAATCTAATTGATGCTGCAACTGTTACCAAAGTAAATCACTTCATATTGGTTACTTCACTGGGAACAAACAAAATTGGCTTTCCTGCAGCTATCCTCAATTTGTTTTGGGGAGTCCTAGTTTGGAAAAGGAAGGCAGAAGAAGCACTGCTGGCCAGTGGACTTCCATACACAATAGTGAGACCTGGAGGTATGGAGCGGCCTACTGATGCTTTCAAGGAAACTCATAATATAACCCTATCAACGGAAGATACTTTATTTGGGGGTCTGGTGTCAAACCTTCAGATTGCTGAACTCTTGGCAGTCATGGCCAAGAATCGTGATCTTTCATATTGTAAAATAGTGGAGGCAATTGCAGAGACAACTTCACCGCTGACTCCCATGGAGGGACTTCTTGCAAGGATACCTTCTCAACGCCCTTACATTTCTTCACCCAAGAAACCAGATATTGCAGTTGTCAGCATTCCAGATCCCCCTGCAAATGTTGTGGCTAAGGAACCTAAAGTAGCCACTCAACAAGAAACTGCACAACCTAAACCAGTGGCAAATCAGCCACTTTCTCCCTATATTGTTTATGATGATTTGAAGCCACCATCATCTCCTTCTCCATCTCAGCCTGGTGGTGGGAAACAAACGAAGATCAGTGAGACAGTGCCACAACCAAGTGCTTCTGATACTCCAAGTAGTGTGCTGGGAGTAGATGGCGACTCTCAGACAACATCGTCATCTAAAGTGGAGAAGCCTCTTTCTCCTTATGTAGTATATCCTGACTTAAAGCCTCCCACGTCACCATCTCCTAATGCACCAACTGTATCAGTTTCCACACCTGCTGCAGCTGGGGTGCCAAAGATAGACACAATATCAAGCAATGGACCAGCCCAACTTTCGACAGCAGATGAACCAAAGAAAGAACATCTCCCTGAACCCAAGTCAACACCACTTTCACCTTATACCATGTATGAGGACTTGAAGCCTCCTGCATCACCATCACCTTCCTTCAGAAATTCTTAG

Predicted protein sequences of Glyma11g12900

Limit To All Plant Sequences

>Glyma11g12900.2   sequence type=predicted peptide   gene model=Glyma11g12900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAFSVQSLTATTIPTSSLSRRAATDKPSATSHVNLSHFTRYPCTTKHKIRCTRAQASGSTKSCTGTAEGISEKTDSKDDNLVFVAGATGRVGSRTVRELIKLGFRVRAGVRSAQRAGALVQSVEQLKLDGANGGVQAVEKLEIVECDLEKPETIGSALGNASTVICSIGASEKEVFDITGPFRIDYLATKNLIDAATVTKVNHFILVTSLGTNKIGFPAAILNLFWGVLVWKRKAEEALLASGLPYTIVRPGGMERPTDAFKETHNITLSTEDTLFGGLVSNLQIAELLAVMAKNRDLSYCKIVEAIAETTSPLTPMEGLLARIPSQRPYISSPKKPDIAVVSIPDPPANVVAKEPKVATQQETAQPKPVANQPLSPYIVYDDLKPPSSPSPSQPGGGKQTKISETVPQPSASDTPSSVLGVDGDSQTTSSSKVEKPLSPYVVYPDLKPPTSPSPNAPTVSVSTPAAAGVPKIDTISSNGPAQLSTADEPKKEHLPEPKSTPLSPYTMYEDLKPPASPSPSFRNS*

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