Glyma11g12870 - SoyBase

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Report for Sequence Feature Glyma11g12870

Feature Type:	gene_model
Chromosome:	Gm11
Start:	9198468
stop:	9202585
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g12870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34350	AT	Annotation by Michelle Graham. TAIR10: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase \| chr4:16428681-16431038 REVERSE LENGTH=466	SoyBase	E_val: 0	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0046677	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to antibiotic	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0046429	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	SoyBase	N/A	ISS
GO:0051745	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	SoyBase	N/A	ISS
PF02401	PFAM	LytB protein	JGI		ISS
UniRef100_D2CFT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydroxymethylbutenyl diphosphate reductase n=1 Tax=Camptotheca acuminata RepID=D2CFT5_CAMAC	SoyBase	E_val: 0	ISS
UniRef100_I1LJH2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJH2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g12870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g12870

Paralog	Evidence	Comments
Glyma12g05010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g12870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g120900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g12870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g12870

Limit To All Plant Sequences

>Glyma11g12870.2   sequence type=transcript   gene model=Glyma11g12870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGTTGAAGTGTTGAACAATAAATAAAAAAAATAAAAAAAATCTGAAAACAACAACAGAGAACACGAGTTTGCAGCCATAAAATAACCCACACATTCAGACTTTGTTGTGTTGTGTTGTGTTGTGTTTGACGCACTGTGTAATGCTATCTACGATGGCTCTCTCTGCGCATATTTGCCGTTTCCCCGCCACGCGCGCTGACACTGCTTTGCCGGAGACTCTCACCAGAATCCGGTGCCAGAAGCCTCTCTCTGTCCGATGCTCTGGCGATTCCCCTTCCGGCTCTGTGGGTTCGGAGTTCGATCCGAAGGTGTTTCGTAAGAACCTTACTCGGAGTAAGAATTATAACCGCAAAGGATTTGGGTACAAGGAAGAGACCCTCCAACTCATGAATCGCGAGTACACCAGTGATATCATTAAGACTTTGAAGGACAACGGGTATGAGTATACATGGGGTACTGTCACAGTGAAGCTTGCTGAAGCCTATGGATTCTGTTGGGGAGTCGAGAGGGCTGTTCAAATTGCTTATGAGGCCAGAAAACAGTTTCCTACTGAGACAATTTGGATTACCAATGAAATCATCCACAACCCCACTGTTAATAAGCGGCTAGAGGAGATGAATGTTCAAAATATTCCTCTGGAAGAAAGTGGAAAACAATTTGATGTTGTCAACAAGGGTGATGTAGTCATATTGCCAGCTTTTGGAGCAGCAGTGGAAGAGATGTTGACTTTGAGCGAGAAAAATGTTCAGATTGTTGATACAACTTGCCCATGGGTTGCAAAGGTATGGAATTCTGTTGAAAAACACAAGCAAGGAGATTATACCTCTGTAATTCATGGTAAATATGCCCATGAGGAAACTGTAGCAACTGCTTCTTTTGCTGGCAAGTATATAATTGTGAAGAATATGAAGGAGGCTGAATATGTTTGCGACTACATTCTTGGTGGTGAATTGAATGGATCCAGTTCAACCAAGGAAGCCTTTTTAGAGAAATTTAAATTTGCAGTTTCTGAGGGCTTTGATCCAGACAGAGACCTGATAAAAGCTGGCATTGCAAATCAGACAACAATGCTCAAGGGAGAGACAGAAGACATTGGGAAACTATTGGAGAGGACTATGATGCACAAATATGGTGTGGAGAACATCAATGAGCACTTCATGAGCTTCAATACAATTTGTGATGCTACTCAGGAGAGACAAGATGCTATGTATAAATTGGTGGAGGAAGATTTGGATCTAATGTTAGTAGTTGGTGGATGGAACTCCAGCAATACTTCACACCTGCAAGAGATAGCGGAGGAACGTGGAATCCCTTCTTATTGGATTGACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTGCCAGAGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACACCAGACAAGGTAAATTTCTCTTGACTGTCATTTTTT

Coding sequences of Glyma11g12870

Limit To All Plant Sequences

>Glyma11g12870.1   sequence type=CDS   gene model=Glyma11g12870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTATCTACGATGGCTCTCTCTGCGCATATTTGCCGTTTCCCCGCCACGCGCGCTGACACTGCTTTGCCGGAGACTCTCACCAGAATCCGGTGCCAGAAGCCTCTCTCTGTCCGATGCTCTGGCGATTCCCCTTCCGGCTCTGTGGGTTCGGAGTTCGATCCGAAGGTGTTTCGTAAGAACCTTACTCGGAGTAAGAATTATAACCGCAAAGGATTTGGGTACAAGGAAGAGACCCTCCAACTCATGAATCGCGAGTACACCAGTGATATCATTAAGACTTTGAAGGACAACGGGTATGAGTATACATGGGGTACTGTCACAGTGAAGCTTGCTGAAGCCTATGGATTCTGTTGGGGAGTCGAGAGGGCTGTTCAAATTGCTTATGAGGCCAGAAAACAGTTTCCTACTGAGACAATTTGGATTACCAATGAAATCATCCACAACCCCACTGTTAATAAGCGGCTAGAGGAGATGAATGTTCAAAATATTCCTCTGGAAGAAAGTGGAAAACAATTTGATGTTGTCAACAAGGGTGATGTAGTCATATTGCCAGCTTTTGGAGCAGCAGTGGAAGAGATGTTGACTTTGAGCGAGAAAAATGTTCAGATTGTTGATACAACTTGCCCATGGGTTGCAAAGGTATGGAATTCTGTTGAAAAACACAAGCAAGGAGATTATACCTCTGTAATTCATGGTAAATATGCCCATGAGGAAACTGTAGCAACTGCTTCTTTTGCTGGCAAGTATATAATTGTGAAGAATATGAAGGAGGCTGAATATGTTTGCGACTACATTCTTGGTGGTGAATTGAATGGATCCAGTTCAACCAAGGAAGCCTTTTTAGAGAAATTTAAATTTGCAGTTTCTGAGGGCTTTGATCCAGACAGAGACCTGATAAAAGCTGGCATTGCAAATCAGACAACAATGCTCAAGGGAGAGACAGAAGACATTGGGAAACTATTGGAGAGGACTATGATGCACAAATATGGTGTGGAGAACATCAATGAGCACTTCATGAGCTTCAATACAATTTGTGATGCTACTCAGGAGAGACAAGATGCTATGTATAAATTGGTGGAGGAAGATTTGGATCTAATGTTAGTAGTTGGTGGATGGAACTCCAGCAATACTTCACACCTGCAAGAGATAGCGGAGGAACGTGGAATCCCTTCTTATTGGATTGACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTGCCAGAGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACACCAGACAAGGTTGTTGAAGATGCACTCATCAGGGTTTTTGACTTGAAACGGGAAGAAGCGATGCAACTTGCGTAG

>Glyma11g12870.2   sequence type=CDS   gene model=Glyma11g12870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTATCTACGATGGCTCTCTCTGCGCATATTTGCCGTTTCCCCGCCACGCGCGCTGACACTGCTTTGCCGGAGACTCTCACCAGAATCCGGTGCCAGAAGCCTCTCTCTGTCCGATGCTCTGGCGATTCCCCTTCCGGCTCTGTGGGTTCGGAGTTCGATCCGAAGGTGTTTCGTAAGAACCTTACTCGGAGTAAGAATTATAACCGCAAAGGATTTGGGTACAAGGAAGAGACCCTCCAACTCATGAATCGCGAGTACACCAGTGATATCATTAAGACTTTGAAGGACAACGGGTATGAGTATACATGGGGTACTGTCACAGTGAAGCTTGCTGAAGCCTATGGATTCTGTTGGGGAGTCGAGAGGGCTGTTCAAATTGCTTATGAGGCCAGAAAACAGTTTCCTACTGAGACAATTTGGATTACCAATGAAATCATCCACAACCCCACTGTTAATAAGCGGCTAGAGGAGATGAATGTTCAAAATATTCCTCTGGAAGAAAGTGGAAAACAATTTGATGTTGTCAACAAGGGTGATGTAGTCATATTGCCAGCTTTTGGAGCAGCAGTGGAAGAGATGTTGACTTTGAGCGAGAAAAATGTTCAGATTGTTGATACAACTTGCCCATGGGTTGCAAAGGTATGGAATTCTGTTGAAAAACACAAGCAAGGAGATTATACCTCTGTAATTCATGGTAAATATGCCCATGAGGAAACTGTAGCAACTGCTTCTTTTGCTGGCAAGTATATAATTGTGAAGAATATGAAGGAGGCTGAATATGTTTGCGACTACATTCTTGGTGGTGAATTGAATGGATCCAGTTCAACCAAGGAAGCCTTTTTAGAGAAATTTAAATTTGCAGTTTCTGAGGGCTTTGATCCAGACAGAGACCTGATAAAAGCTGGCATTGCAAATCAGACAACAATGCTCAAGGGAGAGACAGAAGACATTGGGAAACTATTGGAGAGGACTATGATGCACAAATATGGTGTGGAGAACATCAATGAGCACTTCATGAGCTTCAATACAATTTGTGATGCTACTCAGGAGAGACAAGATGCTATGTATAAATTGGTGGAGGAAGATTTGGATCTAATGTTAGTAGTTGGTGGATGGAACTCCAGCAATACTTCACACCTGCAAGAGATAGCGGAGGAACGTGGAATCCCTTCTTATTGGATTGACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTGCCAGAGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACACCAGACAAGGTAAATTTCTCTTGA

Predicted protein sequences of Glyma11g12870

Limit To All Plant Sequences

>Glyma11g12870.1   sequence type=predicted peptide   gene model=Glyma11g12870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSTMALSAHICRFPATRADTALPETLTRIRCQKPLSVRCSGDSPSGSVGSEFDPKVFRKNLTRSKNYNRKGFGYKEETLQLMNREYTSDIIKTLKDNGYEYTWGTVTVKLAEAYGFCWGVERAVQIAYEARKQFPTETIWITNEIIHNPTVNKRLEEMNVQNIPLEESGKQFDVVNKGDVVILPAFGAAVEEMLTLSEKNVQIVDTTCPWVAKVWNSVEKHKQGDYTSVIHGKYAHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKFAVSEGFDPDRDLIKAGIANQTTMLKGETEDIGKLLERTMMHKYGVENINEHFMSFNTICDATQERQDAMYKLVEEDLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNKIAYKLNHGELVEKENWLPEGPITIGVTSGASTPDKVVEDALIRVFDLKREEAMQLA*

>Glyma11g12870.2   sequence type=predicted peptide   gene model=Glyma11g12870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSTMALSAHICRFPATRADTALPETLTRIRCQKPLSVRCSGDSPSGSVGSEFDPKVFRKNLTRSKNYNRKGFGYKEETLQLMNREYTSDIIKTLKDNGYEYTWGTVTVKLAEAYGFCWGVERAVQIAYEARKQFPTETIWITNEIIHNPTVNKRLEEMNVQNIPLEESGKQFDVVNKGDVVILPAFGAAVEEMLTLSEKNVQIVDTTCPWVAKVWNSVEKHKQGDYTSVIHGKYAHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKFAVSEGFDPDRDLIKAGIANQTTMLKGETEDIGKLLERTMMHKYGVENINEHFMSFNTICDATQERQDAMYKLVEEDLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNKIAYKLNHGELVEKENWLPEGPITIGVTSGASTPDKVNFS*

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