SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G49380 | AT | Annotation by Michelle Graham. TAIR10: cytochrome c biogenesis protein family | chr1:18276794-18279204 FORWARD LENGTH=547 | SoyBase | E_val: 0 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0016556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA modification | SoyBase | N/A | ISS |
| GO:0017004 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytochrome complex assembly | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0043085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF05140 | PFAM | ResB-like family | JGI | ISS | |
| UniRef100_I1LJH0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJH0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9XIA4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome c biogenesis protein CCS1, chloroplastic n=1 Tax=Arabidopsis thaliana RepID=CCS1_ARATH | SoyBase | E_val: 0 | ISS |
|
Glyma11g12860 not represented in the dataset |
Glyma11g12860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g04996 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g120800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g12860.3 sequence type=transcript gene model=Glyma11g12860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTGATCCTCCTCCGTATTAAAATATCTAGTATTTGGATAAAGTGACCGCTGTGGTCGTTATGGCTGATAAGCCAAGAGCTGACAGACCCTGAAACAGTGCTTGTTTCCAAAAGTGTTGATCGATGAAGGCTTTGAGTTTGAGTGCCATAAACACCTCAAATCCATGTCTTCCCCAAACCCATTTCCTCAAAGTCCCTATCTTTCACCCCTTCTTCAGATTCAAGCCATTCTCAAATTCAAGCCATGGTGCAAAGAGAGCTCACACTCTTCCACTCACCATCAGCTGCAAGCTGAAAAACTCTCAAGAAATGAAAAACAAAGGGAAGAGTGTGTCACAGAAGATTGTGTTATCAGAGGCTTCCCCTCCACCACTCACAGAGGATGATAAGAACAATGGTGATAGCAAGGATGTTCCAGAGAGCTCAAAGAAGAAGGGAGGGCTTTCTGGGGTGGCCAATATGTTGAGAAGGAAGACTTTGCAGATTCTCTCTAATTTGCCATTGGCTATTGGGGAAATGTTTGCTGTTGCTTCTTTAATGGCTTTAGGCACATTTATTGATCAAGGTGAAGCCCCTGACTTTTATTTCCAGAAATACCCTGAAGATCATCCCGTGTTTGGATTTTTTACTTGGAGATGGGTTCTCACCCTTGGTTTTGATCACATGTTTACATCCCCTATATTTCTTGGAGTGTTGGCTCTCCTTGGTGCATCCCTCATGGCCTGCACTTACACAACTCAACTCCCCCTCATCAAGGTTTCAAGAAGATGGTCATTTTTGCACTCTGCTGAGGCCATACGTAAGCAAGAATTTTCAGAATCATTGCCAAGAGCATCAATCCAAGATGTTGGTACTATATTGATGGGAGCTGGATACGAGGTATTCTTGAAAGGACCATCTTTATATGCTTTTCAAGGGCTTGCGGGTCGGCTGGCCCCTGTTGGAGTCCATATAGCATTGCTACTGATAATGGCTGGAGGAACTCTTAGTGCTACTGGGAGCTTCAGAGGTTCAGTCACTGTGCCCCAGGGGCTGAATTTTGTTGTAGGTGATGTTCTGGCTCCTTTTGGCTTTCTGTCCTCTCCAACCGATGCTTTTAATACAGAGATTCATGTCAACAAATTCTCCATGGATTATTATGAGAGTGGAGAGGTTTCACAGTTCCACACCGATCTTTCCCTTCGTAACATGGATGGGAAAGAAGTAATGAGGAAGACAATCAGTGTAAATGATCCTTTAAGATACGGTGGTATCACCATATATCAGACAGATTGGAGTATTTCCGCTCTGCAAATTCTTAAGGATAATGAAGGACCTTATAACTTAGCTATGGCACCTCTACAGATAAATGGAGATAAGAAACTTTTTGGTACTTTTCTACCGGTTGGAGATATTAACTCTCCTGACGTTAAGGGAATATCTATGCTTGCTCGTGATCTGCAGTCAATTGTCCTTTATGACAAGGAAGGAAAATTTGCAGGAGTTAGACGGCCTAATTCAAAGCTCCCAATCAATATTGATGGCTCAGAAATTGTCATTGTTGATGCAATAGGAAGTAGTGGCTTGGAATTGAAGACTGATCCAGGTGTGCCAGTTGTATATGCTGGATTTGGTGCTCTAATGATCACTACTTGCATCAGCTATTTGTCTCATTCACAGATATGGGCTTTACAAGATGGGACAACAGTCTTCGTTGGAGGGAAGACTAACAGGGCAAAGATGGAATTTCCAGAGGAGATGAGCCGCTTACTTGATAAGGTCCCTGAAATAGTTGAATCAAATCTACCTAAGCATGCTGATAGCATTAGTGGTTAGCTTATGGCTTTTGACAAATCAAGATAGTTGTCTTGCTGGTTGATCATCAGGGAATTTACAAATGCTCGAAGGATGCCTACAAGAAGTATATCAAGAAAACTTTTGCAGCTCATATTATTTGACATTATCTAGATACACTGAGTTCAACATACATGTATATTTCCTGTATTTTTTTAGTAATGGGGCCAAATTAATCAAAACTCGTATGCCTTGTGTTATTTTGGCCCCTCGTTTAAATAATTGGAAAGTGTATCAGGTCGAATATGAATTTGATGCGTCCATAATGTACAGGTTGCTATTGCAACTGCATTAAGATGAACCACTTGCCTTTACAATTTATTAAGCTATTCCGTGTCCATTTGAGAGACAAAGGGCATCATCAGAGATGTATTATACTCTTTTGTAGCCAAAATTTATAAAGGTAATGTGGACGGTCAATAAGTGCTAGAAGGTTGGTTTATGGTACCGCAACAGGCTAAAATTTATAATAAGAGCTCTTGAACTTTTGTTATTGATATATTTTACAATACATAGGGCTGTAATAGATTCTATGATTAAGTCCCTCGTTTCATTTAGACATTGACAATGTATGTATGACTGACTCTACGCAAGTTGCATCGCTTCTTCCCGTTTCAAGTCAAAAACCCTGATGAGTGCATCTTCAACAACCT
>Glyma11g12860.1 sequence type=CDS gene model=Glyma11g12860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGCTTTGAGTTTGAGTGCCATAAACACCTCAAATCCATGTCTTCCCCAAACCCATTTCCTCAAAGTCCCTATCTTTCACCCCTTCTTCAGATTCAAGCCATTCTCAAATTCAAGCCATGGTGCAAAGAGAGCTCACACTCTTCCACTCACCATCAGCTGCAAGCTGAAAAACTCTCAAGAAATGAAAAACAAAGGGAAGAGTGTGTCACAGAAGATTGTGTTATCAGAGGCTTCCCCTCCACCACTCACAGAGGATGATAAGAACAATGGTGATAGCAAGGATGTTCCAGAGAGCTCAAAGAAGAAGGGAGGGCTTTCTGGGGTGGCCAATATGTTGAGAAGGAAGACTTTGCAGATTCTCTCTAATTTGCCATTGGCTATTGGGGAAATGTTTGCTGTTGCTTCTTTAATGGCTTTAGGCACATTTATTGATCAAGGTGAAGCCCCTGACTTTTATTTCCAGAAATACCCTGAAGATCATCCCGTGTTTGGATTTTTTACTTGGAGATGGGTTCTCACCCTTGGTTTTGATCACATGTTTACATCCCCTATATTTCTTGGAGTGTTGGCTCTCCTTGGTGCATCCCTCATGGCCTGCACTTACACAACTCAACTCCCCCTCATCAAGGTTTCAAGAAGATGGTCATTTTTGCACTCTGCTGAGGCCATACGTAAGCAAGAATTTTCAGAATCATTGCCAAGAGCATCAATCCAAGATGTTGGTACTATATTGATGGGAGCTGGATACGAGGTATTCTTGAAAGGACCATCTTTATATGCTTTTCAAGGGCTTGCGGGTCGGCTGGCCCCTGTTGGAGTCCATATAGCATTGCTACTGATAATGGCTGGAGGAACTCTTAGTGCTACTGGGAGCTTCAGAGGTTCAGTCACTGTGCCCCAGGGGCTGAATTTTGTTGTAGGTGATGTTCTGGCTCCTTTTGGCTTTCTGTCCTCTCCAACCGATGCTTTTAATACAGAGATTCATGTCAACAAATTCTCCATGGATTATTATGAGAGTGGAGAGGTTTCACAGTTCCACACCGATCTTTCCCTTCGTAACATGGATGGGAAAGAAGTAATGAGGAAGACAATCAGTGTAAATGATCCTTTAAGATACGGTGGTATCACCATATATCAGACAGATTGGAGTATTTCCGCTCTGCAAATTCTTAAGGATAATGAAGGACCTTATAACTTAGCTATGGCACCTCTACAGATAAATGGAGATAAGAAACTTTTTGGTACTTTTCTACCGGTTGGAGATATTAACTCTCCTGACGTTAAGGGAATATCTATGCTTGCTCGTGATCTGCAGTCAATTGTCCTTTATGACAAGGAAGGAAAATTTGCAGGAGTTAGACGGCCTAATTCAAAGCTCCCAATCAATATTGATGGCTCAGAAATTGTCATTGTTGATGCAATAGGAAGTAGTGGCTTGGAATTGAAGACTGATCCAGGTGTGCCAGTTGTATATGCTGGATTTGGTGCTCTAATGATCACTACTTGCATCAGCTATTTGTCTCATTCACAGATATGGGCTTTACAAGATGGGACAACAGTCTTCGTTGGAGGGAAGACTAACAGGGCAAAGATGGAATTTCCAGAGGAGATGAGCCGCTTACTTGATAAGGTCCCTGAAATAGTTGAATCAAATCTACCTAAGCATGCTGATAGCATTAGTGGTTAG >Glyma11g12860.3 sequence type=CDS gene model=Glyma11g12860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGCTTTGAGTTTGAGTGCCATAAACACCTCAAATCCATGTCTTCCCCAAACCCATTTCCTCAAAGTCCCTATCTTTCACCCCTTCTTCAGATTCAAGCCATTCTCAAATTCAAGCCATGGTGCAAAGAGAGCTCACACTCTTCCACTCACCATCAGCTGCAAGCTGAAAAACTCTCAAGAAATGAAAAACAAAGGGAAGAGTGTGTCACAGAAGATTGTGTTATCAGAGGCTTCCCCTCCACCACTCACAGAGGATGATAAGAACAATGGTGATAGCAAGGATGTTCCAGAGAGCTCAAAGAAGAAGGGAGGGCTTTCTGGGGTGGCCAATATGTTGAGAAGGAAGACTTTGCAGATTCTCTCTAATTTGCCATTGGCTATTGGGGAAATGTTTGCTGTTGCTTCTTTAATGGCTTTAGGCACATTTATTGATCAAGGTGAAGCCCCTGACTTTTATTTCCAGAAATACCCTGAAGATCATCCCGTGTTTGGATTTTTTACTTGGAGATGGGTTCTCACCCTTGGTTTTGATCACATGTTTACATCCCCTATATTTCTTGGAGTGTTGGCTCTCCTTGGTGCATCCCTCATGGCCTGCACTTACACAACTCAACTCCCCCTCATCAAGGTTTCAAGAAGATGGTCATTTTTGCACTCTGCTGAGGCCATACGTAAGCAAGAATTTTCAGAATCATTGCCAAGAGCATCAATCCAAGATGTTGGTACTATATTGATGGGAGCTGGATACGAGGTATTCTTGAAAGGACCATCTTTATATGCTTTTCAAGGGCTTGCGGGTCGGCTGGCCCCTGTTGGAGTCCATATAGCATTGCTACTGATAATGGCTGGAGGAACTCTTAGTGCTACTGGGAGCTTCAGAGGTTCAGTCACTGTGCCCCAGGGGCTGAATTTTGTTGTAGGTGATGTTCTGGCTCCTTTTGGCTTTCTGTCCTCTCCAACCGATGCTTTTAATACAGAGATTCATGTCAACAAATTCTCCATGGATTATTATGAGAGTGGAGAGGTTTCACAGTTCCACACCGATCTTTCCCTTCGTAACATGGATGGGAAAGAAGTAATGAGGAAGACAATCAGTGTAAATGATCCTTTAAGATACGGTGGTATCACCATATATCAGACAGATTGGAGTATTTCCGCTCTGCAAATTCTTAAGGATAATGAAGGACCTTATAACTTAGCTATGGCACCTCTACAGATAAATGGAGATAAGAAACTTTTTGGTACTTTTCTACCGGTTGGAGATATTAACTCTCCTGACGTTAAGGGAATATCTATGCTTGCTCGTGATCTGCAGTCAATTGTCCTTTATGACAAGGAAGGAAAATTTGCAGGAGTTAGACGGCCTAATTCAAAGCTCCCAATCAATATTGATGGCTCAGAAATTGTCATTGTTGATGCAATAGGAAGTAGTGGCTTGGAATTGAAGACTGATCCAGGTGTGCCAGTTGTATATGCTGGATTTGGTGCTCTAATGATCACTACTTGCATCAGCTATTTGTCTCATTCACAGATATGGGCTTTACAAGATGGGACAACAGTCTTCGTTGGAGGGAAGACTAACAGGGCAAAGATGGAATTTCCAGAGGAGATGAGCCGCTTACTTGATAAGGTCCCTGAAATAGTTGAATCAAATCTACCTAAGCATGCTGATAGCATTAGTGGTTAG
>Glyma11g12860.1 sequence type=predicted peptide gene model=Glyma11g12860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKALSLSAINTSNPCLPQTHFLKVPIFHPFFRFKPFSNSSHGAKRAHTLPLTISCKLKNSQEMKNKGKSVSQKIVLSEASPPPLTEDDKNNGDSKDVPESSKKKGGLSGVANMLRRKTLQILSNLPLAIGEMFAVASLMALGTFIDQGEAPDFYFQKYPEDHPVFGFFTWRWVLTLGFDHMFTSPIFLGVLALLGASLMACTYTTQLPLIKVSRRWSFLHSAEAIRKQEFSESLPRASIQDVGTILMGAGYEVFLKGPSLYAFQGLAGRLAPVGVHIALLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLAPFGFLSSPTDAFNTEIHVNKFSMDYYESGEVSQFHTDLSLRNMDGKEVMRKTISVNDPLRYGGITIYQTDWSISALQILKDNEGPYNLAMAPLQINGDKKLFGTFLPVGDINSPDVKGISMLARDLQSIVLYDKEGKFAGVRRPNSKLPINIDGSEIVIVDAIGSSGLELKTDPGVPVVYAGFGALMITTCISYLSHSQIWALQDGTTVFVGGKTNRAKMEFPEEMSRLLDKVPEIVESNLPKHADSISG* >Glyma11g12860.3 sequence type=predicted peptide gene model=Glyma11g12860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKALSLSAINTSNPCLPQTHFLKVPIFHPFFRFKPFSNSSHGAKRAHTLPLTISCKLKNSQEMKNKGKSVSQKIVLSEASPPPLTEDDKNNGDSKDVPESSKKKGGLSGVANMLRRKTLQILSNLPLAIGEMFAVASLMALGTFIDQGEAPDFYFQKYPEDHPVFGFFTWRWVLTLGFDHMFTSPIFLGVLALLGASLMACTYTTQLPLIKVSRRWSFLHSAEAIRKQEFSESLPRASIQDVGTILMGAGYEVFLKGPSLYAFQGLAGRLAPVGVHIALLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLAPFGFLSSPTDAFNTEIHVNKFSMDYYESGEVSQFHTDLSLRNMDGKEVMRKTISVNDPLRYGGITIYQTDWSISALQILKDNEGPYNLAMAPLQINGDKKLFGTFLPVGDINSPDVKGISMLARDLQSIVLYDKEGKFAGVRRPNSKLPINIDGSEIVIVDAIGSSGLELKTDPGVPVVYAGFGALMITTCISYLSHSQIWALQDGTTVFVGGKTNRAKMEFPEEMSRLLDKVPEIVESNLPKHADSISG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
