Glyma11g12630 - SoyBase

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Report for Sequence Feature Glyma11g12630

Feature Type:	gene_model
Chromosome:	Gm11
Start:	9004307
stop:	9007746
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g12630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18820	AT	Annotation by Michelle Graham. TAIR10: RAB GTPase homolog G3F \| chr3:6484266-6486005 FORWARD LENGTH=206	SoyBase	E_val: 1.00E-144	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0007033	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuole organization	SoyBase	N/A	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0394	KOG	Ras-related GTPase	JGI		ISS
PTHR24073	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24073:SF260	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00071	PFAM	Ras family	JGI		ISS
UniRef100_Q40213	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RAB7C n=1 Tax=Lotus japonicus RepID=Q40213_LOTJA	SoyBase	E_val: 5.00E-147	ISS
UniRef100_UPI00019AA907	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00019AA907 related cluster n=1 Tax=unknown RepID=UPI00019AA907	SoyBase	E_val: 1.00E-150	ISS

Expression Patterns of Glyma11g12630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g12630 not represented in the dataset	Glyma11g12630 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g12630

Paralog	Evidence	Comments
Glyma12g04830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g12630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g118800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g12630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g12630

Limit To All Plant Sequences

>Glyma11g12630.2   sequence type=transcript   gene model=Glyma11g12630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTACTAGTCCCAGCTGTCAACGGGGGAATATTCGCGAAGGCGGTTGCAATTGCATAGCATAGAGAAAGTGCAGAGAGAGCACAGCGTAACGACTCAGTCAAACACTCTGTAACTCTTTATTTTATTTTCTTTCTTTCTTTCTCCGATCGCATAGCTCGCTCGCAACCACCATGCCTTCCCGAAGAAGAACTCTCTTGAAGGTCATCATTCTCGGTGACAGTGGGGTGGGGAAGACATCTTTGATGAACCAATATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTCGAAGATAGGCTTTTCACCTTACAGATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTCTATCGTGGTGCTGATTGTTGTGTTCTTGTATATGATGTTAATTCGATGAAATCATTTGACAACCTTAATAACTGGAGGGAGGAATTTCTGATTCAAGTATGCTTTTATTCCTTTCTGTATAATTTTTTCTCAGTTTTATCTATTATCTCAAGCTATGTTGTACAGATTTTACAACTTTTAAGATTTGTGATCACTTTGGCAGGCAAGTCCTTCTGATCCAGAGAATTTTCCTTTTGTTGTCATAGGAAACAAAATAGATATTGATGGTGGGAACAGCAGAGTGGTATTTACCCTCCCTTAAGTTTGCTATCATCAATGTTTCTTTTCTCTTTTTCCAAAACTTGCCCAGATCAGGCACACTCGTACTCATAAAACACCTAAACACATACTGCTAAACATATGAACACTACCAAGTTCTTGTGTGCAGGTGTCAGAAAAGAAGGCTCGGGCTTGGTGTGCATCAAAAGGAAATATTCCATATTTTGAGACATCTGCCAAAGAAGGTCTTAATGTTGAAGAAGCATTCCAATGCATAGCAAAGAATGCCCTGAAAAGTGGAGAAGAAGAAGAATTATACCTGCCAGACACAATTGATGTTGGAAACAGCAGTCAGCCACGGGCAACAGGATGTGAGTGCTGAATGTATAGGTTTTCTTTTCAATACAATAAAGTACATTACTTCAAATTGATTTCACTGTGTTTAGCCATTGCTGTCTATGTGGAGGCATCATTGTACATTAGTATTTGCTCAAGAAACAAATTGGTCCAATGCTATACGTTGGGTGCTTGTTTGGTTTTGTGATAATTGACCCATATCAGTTGCTCTACATGTATGCTATATTGTGAAAGAAACAGCGTTAAGATTTTTTTGAAGTTATTTTTGTATTGTTTATCGTTCGTACTCGACATCAAATAGAGAATGTTGTACGTCTATTTTCGTTACAAATCTGTTAGCAACCATGATTGTTGTGGTCATGCTTTAGAGGTTCAGTGATCAACTCTCAAAACGC

>Glyma11g12630.3   sequence type=transcript   gene model=Glyma11g12630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTACTAGTCCCAGCTGTCAACGGGGGAATATTCGCGAAGGCGGTTGCAATTGCATAGCATAGAGAAAGTGCAGAGAGAGCACAGCGTAACGACTCAGTCAAACACTCTGTAACTCTTTATTTTATTTTCTTTCTTTCTTTCTCCGATCGCATAGCTCGCTCGCAACCACCATGCCTTCCCGAAGAAGAACTCTCTTGAAGGTCATCATTCTCGGTGACAGTGGGGTGGGGAAGACATCTTTGATGAACCAATATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTCGAAGATAGGCTTTTCACCTTACAGATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTCTATCGTGGTGCTGATTGTTGTGTTCTTGTATATGATGTTAATTCGATGAAATCATTTGACAACCTTAATAACTGGAGGGAGGAATTTCTGATTCAAGTATGCTTTTATTCCTTTCTGTATAATTTTTTCTCAGTTTTATCTATTATCTCAAGCTATGTTGTACAGATTTTACAACTTTTAAGATTTGTGATCACTTTGGCAGGCAAGTCCTTCTGATCCAGAGAATTTTCCTTTTGTTGTCATAGGAAACAAAATAGATATTGATGGTGGGAACAGCAGAGTGGTATTTACCCTCCCTTAAGTTTGCTATCATCAATGTTTCTTTTCTCTTTTTCCAAAACTTGCCCAGATCAGGCACACTCGTACTCATAAAACACCTAAACACATACTGCTAAACATATGAACACTACCAAGTTCTTGTGTGCAGGTGTCAGAAAAGAAGGCTCGGGCTTGGTGTGCATCAAAAGGAAATATTCCATATTTTGAGACATCTGCCAAAGAAGGTCTTAATGTTGAAGAAGCATTCCAATGCATAGCAAAGAATGCCCTGAAAAGTGGAGAAGAAGAAGAATTGTAAGTTCTTAAATCTGGGCATCTCTTTCATATATGTGAACTGACCAACTGAA

>Glyma11g12630.4   sequence type=transcript   gene model=Glyma11g12630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTACTAGTCCCAGCTGTCAACGGGGGAATATTCGCGAAGGCGGTTGCAATTGCATAGCATAGAGAAAGTGCAGAGAGAGCACAGCGTAACGACTCAGTCAAACACTCTGTAACTCTTTATTTTATTTTCTTTCTTTCTTTCTCCGATCGCATAGCTCGCTCGCAACCACCATGCCTTCCCGAAGAAGAACTCTCTTGAAGGTCATCATTCTCGGTGACAGTGGGGTGGGGAAGACATCTTTGATGAACCAATATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTCGAAGATAGGCTTTTCACCTTACAGATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTCTATCGTGGTGCTGATTGTTGTGTTCTTGTATATGATGTTAATTCGATGAAATCATTTGACAACCTTAATAACTGGAGGGAGGAATTTCTGATTCAAGTGTCAGAAAAGAAGGCTCGGGCTTGGTGTGCATCAAAAGGAAATATTCCATATTTTGAGACATCTGCCAAAGAAGGTCTTAATGTTGAAGAAGCATTCCAATGCATAGCAAAGAATGCCCTGAAAAGTGGAGAAGAAGAAGAATTATACCTGCCAGACACAATTGATGTTGGAAACAGCAGTCAGCCACGGGCAACAGGATGTGAGTGCTGAATGTATAGGTTTTCTTTTCAATACAATAAAGTACATTACTTCAAATTGATTTCACTGTGTTTAGCCATTGCTGTCTATGTGGAGGCATCATTGTACATTAGTATTTGCTCAAGAAACAAATTGGTCCAATGCTATACGTTGGGTGCTTGTTTGGTTTTGTGATAATTGACCCATATCAGTTGCTCTACATGTATGCTATATTGTGAAAGAAACAGCGTTAAGATTTTTTTGAAGTTATTTTTGTATTGTTTATCGTTCGTACTCGACATCAAATAGAGAATGTTGTACGTCTATTTTCGTTACAAATCTGTTAGCAACCATGATTGTTGTGGTCATGCTTTAGAGGTTCAGTGATCAACTCTCAAAACGC

Coding sequences of Glyma11g12630

Limit To All Plant Sequences

>Glyma11g12630.1   sequence type=CDS   gene model=Glyma11g12630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCCCGAAGAAGAACTCTCTTGAAGGTCATCATTCTCGGTGACAGTGGGGTGGGGAAGACATCTTTGATGAACCAATATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTCGAAGATAGGCTTTTCACCTTACAGATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTCTATCGTGGTGCTGATTGTTGTGTTCTTGTATATGATGTTAATTCGATGAAATCATTTGACAACCTTAATAACTGGAGGGAGGAATTTCTGATTCAAGCAAGTCCTTCTGATCCAGAGAATTTTCCTTTTGTTGTCATAGGAAACAAAATAGATATTGATGGTGGGAACAGCAGAGTGGTGTCAGAAAAGAAGGCTCGGGCTTGGTGTGCATCAAAAGGAAATATTCCATATTTTGAGACATCTGCCAAAGAAGGTCTTAATGTTGAAGAAGCATTCCAATGCATAGCAAAGAATGCCCTGAAAAGTGGAGAAGAAGAAGAATTATACCTGCCAGACACAATTGATGTTGGAAACAGCAGTCAGCCACGGGCAACAGGATGTGAGTGCTGA

>Glyma11g12630.2   sequence type=CDS   gene model=Glyma11g12630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCCCGAAGAAGAACTCTCTTGAAGGTCATCATTCTCGGTGACAGTGGGGTGGGGAAGACATCTTTGATGAACCAATATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTCGAAGATAGGCTTTTCACCTTACAGATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTCTATCGTGGTGCTGATTGTTGTGTTCTTGTATATGATGTTAATTCGATGAAATCATTTGACAACCTTAATAACTGGAGGGAGGAATTTCTGATTCAAGTATGCTTTTATTCCTTTCTGTATAATTTTTTCTCAGTTTTATCTATTATCTCAAGCTATGTTGTACAGATTTTACAACTTTTAAGATTTGTGATCACTTTGGCAGGCAAGTCCTTCTGA

>Glyma11g12630.3   sequence type=CDS   gene model=Glyma11g12630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCCCGAAGAAGAACTCTCTTGAAGGTCATCATTCTCGGTGACAGTGGGGTGGGGAAGACATCTTTGATGAACCAATATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTCGAAGATAGGCTTTTCACCTTACAGATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTCTATCGTGGTGCTGATTGTTGTGTTCTTGTATATGATGTTAATTCGATGAAATCATTTGACAACCTTAATAACTGGAGGGAGGAATTTCTGATTCAAGTATGCTTTTATTCCTTTCTGTATAATTTTTTCTCAGTTTTATCTATTATCTCAAGCTATGTTGTACAGATTTTACAACTTTTAAGATTTGTGATCACTTTGGCAGGCAAGTCCTTCTGA

>Glyma11g12630.4   sequence type=CDS   gene model=Glyma11g12630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCCCGAAGAAGAACTCTCTTGAAGGTCATCATTCTCGGTGACAGTGGGGTGGGGAAGACATCTTTGATGAACCAATATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTCGAAGATAGGCTTTTCACCTTACAGATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTCTATCGTGGTGCTGATTGTTGTGTTCTTGTATATGATGTTAATTCGATGAAATCATTTGACAACCTTAATAACTGGAGGGAGGAATTTCTGATTCAAGTGTCAGAAAAGAAGGCTCGGGCTTGGTGTGCATCAAAAGGAAATATTCCATATTTTGAGACATCTGCCAAAGAAGGTCTTAATGTTGAAGAAGCATTCCAATGCATAGCAAAGAATGCCCTGAAAAGTGGAGAAGAAGAAGAATTATACCTGCCAGACACAATTGATGTTGGAAACAGCAGTCAGCCACGGGCAACAGGATGTGAGTGCTGA

Predicted protein sequences of Glyma11g12630

Limit To All Plant Sequences

>Glyma11g12630.1   sequence type=predicted peptide   gene model=Glyma11g12630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGLNVEEAFQCIAKNALKSGEEEELYLPDTIDVGNSSQPRATGCEC*

>Glyma11g12630.2   sequence type=predicted peptide   gene model=Glyma11g12630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQVCFYSFLYNFFSVLSIISSYVVQILQLLRFVITLAGKSF*

>Glyma11g12630.3   sequence type=predicted peptide   gene model=Glyma11g12630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQVCFYSFLYNFFSVLSIISSYVVQILQLLRFVITLAGKSF*

>Glyma11g12630.4   sequence type=predicted peptide   gene model=Glyma11g12630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQVSEKKARAWCASKGNIPYFETSAKEGLNVEEAFQCIAKNALKSGEEEELYLPDTIDVGNSSQPRATGCEC*

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