SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G34460 | AT | Annotation by Michelle Graham. TAIR10: GTP binding protein beta 1 | chr4:16477393-16479266 REVERSE LENGTH=377 | SoyBase | E_val: 0 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0007154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell communication | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0009991 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to extracellular stimulus | SoyBase | N/A | ISS |
| GO:0010154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fruit development | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048527 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root development | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0051707 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to other organism | SoyBase | N/A | ISS |
| GO:0072593 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reactive oxygen species metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005834 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0286 | KOG | G-protein beta subunit | JGI | ISS | |
| PTHR19850 | Panther | GUANINE NUCLEOTIDE-BINDING PROTEIN BETA (G PROTEIN BETA) | JGI | ISS | |
| PTHR19850:SF3 | Panther | GUANINE NUCLEOTIDE-BINDING PROTEIN BETA 2 (G PROTEIN BETA2) | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_G7J6K3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Guanine nucleotide-binding protein subunit beta-1 n=1 Tax=Medicago truncatula RepID=G7J6K3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LJE1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJE1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g12600 not represented in the dataset |
Glyma11g12600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g04810 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g118500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g12600.1 sequence type=CDS gene model=Glyma11g12600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGTTACGGAGCTCAAGGAGCGTCACTCTGCTGCCACCGACACCGTCAACAATCTCAGACACCGTTTAAAGCAGAAGCGCCTTTCGTTGCTCGACACAGATATTTCTGGGTATGCAAGGTCTCAGGGTAGAACGCCTGTGACCTTTGGACCTACGGATCTGGTTTGCTGTAGAACCTTGCAGGGTCACACGGGAAAGGTGTATTCATTGGATTGGACTTCTGAAAAAAGTCAGATTGTTAGTGCATCTCAAGATGGGCGATTAATAGTGTGGAATGCTCTAACTAGGCAGAAAATTCATGCCATAAAGCTACCTTGTGCATGGGTCATGACCTGTGCTTTTTCACCAACTGGTCAGTCTGTTGCATGTGGTGGTCTGGACAGTGTTTGTTCTATTTTCAATCTTAATTCGCCAACTGACAAGGATGGGAATCTACCTGTTTCCCGGATGCTTAGTGGACATAAGGGGTATGTTTCCTCTTGTCAGTATGTTCCAGATGAAGATACTCATTTAATTACTGGTTCTGGTGATCAGACATGTGTTTTATGGGATATTACTACTGGCCTTAAAACATCTGTCTTTGGAGGAGAGTTTCAGTCTGGACATACTGCAGATGTACTTAGTATCTCCATTAATGGATCCAACTCGAGAATGTTTGTATCTGGTTCTTGTGATGCAACTGCTCGATTGTGGGATACTCGCGTGGCAAGTCGAGCAGTGCGGACATTTCATGGGCATGAGGGAGATGTTAATGCAGTCAAATTCTTTCCTGATGGAAATAGATTTGGAACTGGTTCAGATGATGGAACCTGCAGATTATTTGACATTAGGACTGGGCACCAACTTCAAGTTTATTATCAGCAGCACAGTGACAATGAGATCCCACCTGTGACTTCCATTGCATTCTCCGCTTCAGGAAGACTTCTCTTTGCTGGATACACAAATGGAGATTGCTATGTCTGGGACACTTTATTGGCAAAGGTGGTACTGAATATAGGATCTCTCCAAGACTCTCATGAGGACAGGATCAGCTGTTTAGGTTTGTCAGCTGATGGAAGTGCCTTGTGTACAGGAAGTTGGGACACAAACTTAAAGATATGGGCGTTTGGAGGGCATAGGAGGACAACTTAA
>Glyma11g12600.1 sequence type=predicted peptide gene model=Glyma11g12600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSVTELKERHSAATDTVNNLRHRLKQKRLSLLDTDISGYARSQGRTPVTFGPTDLVCCRTLQGHTGKVYSLDWTSEKSQIVSASQDGRLIVWNALTRQKIHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSSCQYVPDEDTHLITGSGDQTCVLWDITTGLKTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDATARLWDTRVASRAVRTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHSDNEIPPVTSIAFSASGRLLFAGYTNGDCYVWDTLLAKVVLNIGSLQDSHEDRISCLGLSADGSALCTGSWDTNLKIWAFGGHRRTT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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