Glyma11g12550 - SoyBase

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Report for Sequence Feature Glyma11g12550

Feature Type:	gene_model
Chromosome:	Gm11
Start:	8944142
stop:	8947514
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g12550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19400	AT	Annotation by Michelle Graham. TAIR10: Erythronate-4-phosphate dehydrogenase family protein \| chr1:6712222-6713676 REVERSE LENGTH=303	SoyBase	E_val: 9.00E-110	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B9R7T7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2-hydroxyacid dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9R7T7_RICCO	SoyBase	E_val: 2.00E-126	ISS
UniRef100_I1LJD7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJD7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g12550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g12550 not represented in the dataset	Glyma11g12550 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g12550

Paralog	Evidence	Comments
Glyma12g04760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g12550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g118000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g12550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g12550

Limit To All Plant Sequences

>Glyma11g12550.4   sequence type=transcript   gene model=Glyma11g12550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCTGTAATTTAGCGTACTTGGACCTCTTTAATGAAAATGAAAATAAATAAATAAAACAAGTGTGTGCTTCTAATTCTAACTTGGCAAGAAATCCACCCATTCCAATCCATCTCCCTACAGCGAAGACAGGGAGAGAGAGCATGCCAGCGAACCAACGAACCTATGAAACAGATCACATTTTACGTCCTTTTCAATTCAACAATTCACAGACCAACCCCCTAAATCTCCATAATTGGTTAATACATTCTCTCTCTCTCTCTCTCTCTGTGGATAAGATCTTGAGAATATCACATACAGATGGACCCCACTTCCTCCATTAAAATAACAATATCCAACACTTCTCAATTCCATAAACTGAGAAGAACCCATTTGATTCTCTGCAGAATCTGGGGTTGTTCCTGCTTTGGTCTGGTCTCTCAGCTCTGATAGATTGGCACCGATTCTGGGTGTGAGCCAAAAAAGCTTTCTTTTGTTTCCTCTATTTTTCTTTTCGGCAAAGTAGAAGATATTTGTGATTTTCTTCTGTGAATTGAATTCGAGTCGTTGCTTCTGGCTTCGGTGCTTGCTGTTTTGTTGGCACAAGTTATTGGTCCAATTGAAATGAAAGAGTTTGAGTGAAAAGGAGACTTAGACTGTGTGGTCTGGCCATGGAGAATTCTTATAAGGCAAATGGAAATGGACCAACTGAGAATGGTTACTCTGTTGCAAGGCATTCTTATCAACCCTCCTTGAAGGGGTCATTACCTTGGCTGGACATAAAGGTGTTTTATGTAAGAGTGTGCAAGTGTGAGCTTGATGATTCCACTCCTGGATCTCTTACACTGAATCATGTTCCTTTGAATCCTGACACTCTTCTTGAAATTAATGGCGTTCGTACTAGTATATATTCTGATGGGATGTCAACCCTTCTCAAGAGAGACAGGGTAGATAGAAAATCAGAAGAAGTGACATTTGTAAGCACTGATAGCATAAGGATGAGTGGTAGTGTCAAGTTCGAGGTGTTTGATAAAGATGTTCTGCTGCTTTCCGGTGCTTTAGAATTGTGTAATACCAATGGTGTTGTTGGGGAATCAAGTTATAATGGACAAAGGTGGAACATGAACTGTGAGTCATATATAATTCCAGGCACCAGCTTCTTTAAGGGGAAACAATTGCTGTTGCCAGACTCAAGTCTCCCAACAATTGAGGTCTACATTGCCGGCTCCTTCTCGAGTACTCCAATTATCTTGACAAAAACCTTGCAGCTTTCTCAGAAAAAGCATACAAAGAAGGGAGTATTGGATGCAATTCCAGAGCATGAGGCCAGTGAAAATGGGAAAGATATTTCTTCAGCCCATGCTTTGCAGGCCCCAGATTACCTTTACGACAAACATGAAGATGAAGATTATAATAGCCTCTACCCAGGAACAGCATATGCCGATGGCGAAGATGGAGAACTTTCATGGTTCAATGCCGGTGTTAGGGTCGGTGTTGGTATTGGACTTAGTGTTTGTCTTGGCATTGGCATTGGAGTTGGCCTGCTTGTTAAAACCTACCAAGGCACCACTAGCCACTTTAGAAGACGGCTGTTCTGATCGGGGCTTCTATTTAAGCTTAAAACTCTCTGCTTTTTGTTCATCTCCCTCTTAATCCAAAGACAGCTAACCTTATTTTTGTCCATCTCCCTCTTGAGTCTTGATCCAAAGACAACAGGTTAAATATCTTGTCCATCTGAGTGGAGGGTTTTTTTTTTTTGCTGTATGTAATATAGTTTATTTTTAGTGCCATTCTATGCGAGGTATGATCTTAACTTCTTAAGTAAAACAGCAAGAACTAAGAAGTTTTTGAATTATTTGCCCTACTTATTAAGGTGTTGAACTGGTGAAAGCATGATTAGTTTAGTTTTGACTTTCCTATTGATCGTAATAATCCTCCTTCAACAAAGTAATAAGAAACTAGTCCCAAAATGTATCTATGGTATTAAAAAAATGTATTTTCTTTTATGACAATTGTGTTTCATATTCATTTATTGGTTAAATGGTGCAAGTACAAGAGGAGTT

>Glyma11g12550.5   sequence type=transcript   gene model=Glyma11g12550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCTGTAATTTAGCGTACTTGGACCTCTTTAATGAAAATGAAAATAAATAAATAAAACAAGTGTGTGCTTCTAATTCTAACTTGGCAAGAAATCCACCCATTCCAATCCATCTCCCTACAGCGAAGACAGGGAGAGAGAGCATGCCAGCGAACCAACGAACCTATGAAACAGATCACATTTTACGTCCTTTTCAATTCAACAATTCACAGACCAACCCCCTAAATCTCCATAATTGGTTAATACATTCTCTCTCTCTCTCTCTCTCTGTGGATAAGATCTTGAGAATATCACATACAGATGGACCCCACTTCCTCCATTAAAATAACAATATCCAACACTTCTCAATTCCATAAACTGAGAAGAACCCATTTGATTCTCTGCAGAATCTGGGGTTGTTCCTGCTTTGGTCTGGTCTCTCAGCTCTGATAGATTGGCACCGATTCTGGGTGTGAGCCAAAAAAGCTTTCTTTTGTTTCCTCTATTTTTCTTTTCGGCAAAGTAGAAGATATTTGTGGTGAGTACGGTGTGGTGGTTGGGTTGGGCGTTAAATAAATAATGCGTTTCCGGTTTCGGTGATGTGTTTGCATCAATGCATGGTTCCTGCTAGTGATGCTTTTGTCCTCTTCCTGTCTTTTTTAGCCGGCTATTTTGTCTTAAACTCTCTACATAGCAGATTCATTCATTTTGCTTTGCGTTTTTTTTTCTTTGTTTTCTCCGGTGATTAGTTATGTTGCTTGATCCATTTGCTTCACTGCATGTGTGTGTTTAAACACTTAAATTTCTTGTTTTTCTTCGGCAAATTGGTGGATTGTCTTCGGTATGGTGTAATTTACTGTTCAATTAAGAAAAATGGGGGTATCAATCGGATTACAGAAAGAGACACGGCTTTTTCTGCAGATTTAGCCACAGACTTTTGATATATTCGAGGACTTTCTAAATTTATCTCCTTCACTCCCTCTTATCCTCTTTTTGTCTCTTCTTTCTTCAGATTTTCTTCTGTGAATTGAATTCGAGTCGTTGCTTCTGGCTTCGGTGCTTGCTGTTTTGTTGGCACAAGTTATTGGTCCAATTGAAATGAAAGAGTTTGAGTGAAAAGGAGACTTAGACTGTGTGGTCTGGCCATGGAGAATTCTTATAAGGCAAATGGAAATGGACCAACTGAGAATGGTTACTCTGTTGCAAGGCATTCTTATCAACCCTCCTTGAAGGGGTCATTACCTTGGCTGGACATAAAGGTGTTTTATGTAAGAGTGTGCAAGTGTGAGCTTGATGATTCCACTCCTGGATCTCTTACACTGAATCATGTTCCTTTGAATCCTGACACTCTTCTTGAAATTAATGGCGTTCGTACTAGTATATATTCTGATGGGATGTCAACCCTTCTCAAGAGAGACAGGGTAGATAGAAAATCAGAAGAAGTGACATTTGTAAGCACTGATAGCATAAGGATGAGTGGTAGTGTCAAGTTCGAGGTGTTTGATAAAGATGTTCTGCTGCTTTCCGGTGCTTTAGAATTGTGTAATACCAATGGTGTTGTTGGGGAATCAAGTTATAATGGACAAAGGTGGAACATGAACTGTGAGTCATATATAATTCCAGGCACCAGCTTCTTTAAGGGGAAACAATTGCTGTTGCCAGACTCAAGTCTCCCAACAATTGAGGTCTACATTGCCGGCTCCTTCTCGAGTACTCCAATTATCTTGACAAAAACCTTGCAGCTTTCTCAGAAAAAGCATACAAAGAAGGGAGTATTGGATGCAATTCCAGAGCATGAGGCCAGTGAAAATGGGAAAGATATTTCTTCAGCCCATGCTTTGCAGGCCCCAGATTACCTTTACGACAAACATGAAGATGAAGATTATAATAGCCTCTACCCAGGAACAGCATATGCCGATGGCGAAGATGGAGAACTTTCATGGTTCAATGCCGGTGTTAGGGTCGGTGTTGGTATTGGACTTAGTGTTTGTCTTGGCATTGGCATTGGAGTTGGCCTGCTTGTTAAAACCTACCAAGGCACCACTAGCCACTTTAGAAGACGGCTGTTCTGATCGGGGCTTCTATTTAAGCTTAAAACTCTCTGCTTTTTGTTCATCTCCCTCTTAATCCAAAGACAGCTAACCTTATTTTTGTCCATCTCCCTCTTGAGTCTTGATCCAAAGACAACAGGTTAAATATCTTGTCCATCTGAGTGGAGGGTTTTTTTTTTTTGCTGTATGTAATATAGTTTATTTTTAGTGCCATTCTATGCGAGGTATGATCTTAACTTCTTAAGTAAAACAGCAAGAACTAAGAAGTTTTTGAATTATTTGCCCTACTTATTAAGGTGTTGAACTGGTGAAAGCATGATTAGTTTAGTTTTGACTTTCCTATTGATCGTAATAATCCTCCTTCAACAAAGTAATAAGAAACTAGTCCCAAAATGTATCTATGGTATTAAAAAAATGTATTTTCTTTTATGACAATTGTGTTTCATATTCATTTATTGGTTAAATGGTGCAAGTACAAGAGGAGTT

Coding sequences of Glyma11g12550

Limit To All Plant Sequences

>Glyma11g12550.3   sequence type=CDS   gene model=Glyma11g12550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAATTCTTATAAGGCAAATGGAAATGGACCAACTGAGAATGGTTACTCTGTTGCAAGGCATTCTTATCAACCCTCCTTGAAGGGGTCATTACCTTGGCTGGACATAAAGGTGTTTTATGTAAGAGTGTGCAAGTGTGAGCTTGATGATTCCACTCCTGGATCTCTTACACTGAATCATGTTCCTTTGAATCCTGACACTCTTCTTGAAATTAATGGCGTTCGTACTAGTATATATTCTGATGGGATGTCAACCCTTCTCAAGAGAGACAGGGTAGATAGAAAATCAGAAGAAGTGACATTTGTAAGCACTGATAGCATAAGGATGAGTGGTAGTGTCAAGTTCGAGGTGTTTGATAAAGATGTTCTGCTGCTTTCCGGTGCTTTAGAATTGTGTAATACCAATGGTGTTGTTGGGGAATCAAGTTATAATGGACAAAGGTGGAACATGAACTGTGAGTCATATATAATTCCAGGCACCAGCTTCTTTAAGGGGAAACAATTGCTGTTGCCAGACTCAAGTCTCCCAACAATTGAGGTCTACATTGCCGGCTCCTTCTCGAGTACTCCAATTATCTTGACAAAAACCTTGCAGCTTTCTCAGAAAAAGCATACAAAGAAGGGAGTATTGGATGCAATTCCAGAGCATGAGGCCAGTGAAAATGGGAAAGATATTTCTTCAGCCCATGCTTTGCAGGCCCCAGATTACCTTTACGACAAACATGAAGATGAAGATTATAATAGCCTCTACCCAGGAACAGCATATGCCGATGGCGAAGATGGAGAACTTTCATGGTTCAATGCCGGTGTTAGGGTCGGTGTTGGTATTGGACTTAGTGTTTGTCTTGGCATTGGCATTGGAGTTGGCCTGCTTGTTAAAACCTACCAAGGCACCACTAGCCACTTTAGAAGACGGCTGTTCTGA

>Glyma11g12550.4   sequence type=CDS   gene model=Glyma11g12550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAATTCTTATAAGGCAAATGGAAATGGACCAACTGAGAATGGTTACTCTGTTGCAAGGCATTCTTATCAACCCTCCTTGAAGGGGTCATTACCTTGGCTGGACATAAAGGTGTTTTATGTAAGAGTGTGCAAGTGTGAGCTTGATGATTCCACTCCTGGATCTCTTACACTGAATCATGTTCCTTTGAATCCTGACACTCTTCTTGAAATTAATGGCGTTCGTACTAGTATATATTCTGATGGGATGTCAACCCTTCTCAAGAGAGACAGGGTAGATAGAAAATCAGAAGAAGTGACATTTGTAAGCACTGATAGCATAAGGATGAGTGGTAGTGTCAAGTTCGAGGTGTTTGATAAAGATGTTCTGCTGCTTTCCGGTGCTTTAGAATTGTGTAATACCAATGGTGTTGTTGGGGAATCAAGTTATAATGGACAAAGGTGGAACATGAACTGTGAGTCATATATAATTCCAGGCACCAGCTTCTTTAAGGGGAAACAATTGCTGTTGCCAGACTCAAGTCTCCCAACAATTGAGGTCTACATTGCCGGCTCCTTCTCGAGTACTCCAATTATCTTGACAAAAACCTTGCAGCTTTCTCAGAAAAAGCATACAAAGAAGGGAGTATTGGATGCAATTCCAGAGCATGAGGCCAGTGAAAATGGGAAAGATATTTCTTCAGCCCATGCTTTGCAGGCCCCAGATTACCTTTACGACAAACATGAAGATGAAGATTATAATAGCCTCTACCCAGGAACAGCATATGCCGATGGCGAAGATGGAGAACTTTCATGGTTCAATGCCGGTGTTAGGGTCGGTGTTGGTATTGGACTTAGTGTTTGTCTTGGCATTGGCATTGGAGTTGGCCTGCTTGTTAAAACCTACCAAGGCACCACTAGCCACTTTAGAAGACGGCTGTTCTGA

>Glyma11g12550.5   sequence type=CDS   gene model=Glyma11g12550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAATTCTTATAAGGCAAATGGAAATGGACCAACTGAGAATGGTTACTCTGTTGCAAGGCATTCTTATCAACCCTCCTTGAAGGGGTCATTACCTTGGCTGGACATAAAGGTGTTTTATGTAAGAGTGTGCAAGTGTGAGCTTGATGATTCCACTCCTGGATCTCTTACACTGAATCATGTTCCTTTGAATCCTGACACTCTTCTTGAAATTAATGGCGTTCGTACTAGTATATATTCTGATGGGATGTCAACCCTTCTCAAGAGAGACAGGGTAGATAGAAAATCAGAAGAAGTGACATTTGTAAGCACTGATAGCATAAGGATGAGTGGTAGTGTCAAGTTCGAGGTGTTTGATAAAGATGTTCTGCTGCTTTCCGGTGCTTTAGAATTGTGTAATACCAATGGTGTTGTTGGGGAATCAAGTTATAATGGACAAAGGTGGAACATGAACTGTGAGTCATATATAATTCCAGGCACCAGCTTCTTTAAGGGGAAACAATTGCTGTTGCCAGACTCAAGTCTCCCAACAATTGAGGTCTACATTGCCGGCTCCTTCTCGAGTACTCCAATTATCTTGACAAAAACCTTGCAGCTTTCTCAGAAAAAGCATACAAAGAAGGGAGTATTGGATGCAATTCCAGAGCATGAGGCCAGTGAAAATGGGAAAGATATTTCTTCAGCCCATGCTTTGCAGGCCCCAGATTACCTTTACGACAAACATGAAGATGAAGATTATAATAGCCTCTACCCAGGAACAGCATATGCCGATGGCGAAGATGGAGAACTTTCATGGTTCAATGCCGGTGTTAGGGTCGGTGTTGGTATTGGACTTAGTGTTTGTCTTGGCATTGGCATTGGAGTTGGCCTGCTTGTTAAAACCTACCAAGGCACCACTAGCCACTTTAGAAGACGGCTGTTCTGA

Predicted protein sequences of Glyma11g12550

Limit To All Plant Sequences

>Glyma11g12550.3   sequence type=predicted peptide   gene model=Glyma11g12550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENSYKANGNGPTENGYSVARHSYQPSLKGSLPWLDIKVFYVRVCKCELDDSTPGSLTLNHVPLNPDTLLEINGVRTSIYSDGMSTLLKRDRVDRKSEEVTFVSTDSIRMSGSVKFEVFDKDVLLLSGALELCNTNGVVGESSYNGQRWNMNCESYIIPGTSFFKGKQLLLPDSSLPTIEVYIAGSFSSTPIILTKTLQLSQKKHTKKGVLDAIPEHEASENGKDISSAHALQAPDYLYDKHEDEDYNSLYPGTAYADGEDGELSWFNAGVRVGVGIGLSVCLGIGIGVGLLVKTYQGTTSHFRRRLF*

>Glyma11g12550.4   sequence type=predicted peptide   gene model=Glyma11g12550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENSYKANGNGPTENGYSVARHSYQPSLKGSLPWLDIKVFYVRVCKCELDDSTPGSLTLNHVPLNPDTLLEINGVRTSIYSDGMSTLLKRDRVDRKSEEVTFVSTDSIRMSGSVKFEVFDKDVLLLSGALELCNTNGVVGESSYNGQRWNMNCESYIIPGTSFFKGKQLLLPDSSLPTIEVYIAGSFSSTPIILTKTLQLSQKKHTKKGVLDAIPEHEASENGKDISSAHALQAPDYLYDKHEDEDYNSLYPGTAYADGEDGELSWFNAGVRVGVGIGLSVCLGIGIGVGLLVKTYQGTTSHFRRRLF*

>Glyma11g12550.5   sequence type=predicted peptide   gene model=Glyma11g12550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENSYKANGNGPTENGYSVARHSYQPSLKGSLPWLDIKVFYVRVCKCELDDSTPGSLTLNHVPLNPDTLLEINGVRTSIYSDGMSTLLKRDRVDRKSEEVTFVSTDSIRMSGSVKFEVFDKDVLLLSGALELCNTNGVVGESSYNGQRWNMNCESYIIPGTSFFKGKQLLLPDSSLPTIEVYIAGSFSSTPIILTKTLQLSQKKHTKKGVLDAIPEHEASENGKDISSAHALQAPDYLYDKHEDEDYNSLYPGTAYADGEDGELSWFNAGVRVGVGIGLSVCLGIGIGVGLLVKTYQGTTSHFRRRLF*

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