Glyma11g12450 - SoyBase

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Report for Sequence Feature Glyma11g12450

Feature Type:	gene_model
Chromosome:	Gm11
Start:	8879717
stop:	8882897
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g12450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68920	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr1:25915620-25917675 FORWARD LENGTH=485	SoyBase	E_val: 2.00E-55	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR12565	Panther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	JGI		ISS
PTHR12565:SF7	Panther	CENTROMERE-BINDING PROTEIN 1, CBP-1	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7JHB9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BHLH transcription factor n=1 Tax=Medicago truncatula RepID=G7JHB9_MEDTR	SoyBase	E_val: 8.00E-147	ISS
UniRef100_I1LJC6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJC6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g12450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g12450

Paralog	Evidence	Comments
Glyma12g04670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g12450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g117100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g12450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g12450

Limit To All Plant Sequences

>Glyma11g12450.2   sequence type=transcript   gene model=Glyma11g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACGAAACAAATATAATATAATCTTCCCACGTTTATATATACCCACTCCTATCCCTCTCCTCATCCTTAACAACATTTCACGCTTCCTCCTCCTCTGTTTCTCTCGCACACTCTGACCCTACGTCGTTTTTTCTTTTTGTTTTCCAAACACACACACACCGCGTACTACAACTACAACAACGCCGTGCCTAATCCTTAAGAATAACAAACAACAGCCAACCATGTTGCATTGTCTCAACACTTCGGGGAATCTAGGAGCCACCTGTTCGGACATGACAGTGTTGGAAAGACAACGGGAAGCAACCATCAAGTGGCAGCAACACCTCCAGAACAACCAACCACCCTACTTAACGGACTTTAACGTTAACGTTAACGCCGTCTTCTCTTCTTCTTCTTCTTCTTCTCAGAGTCAGGGCCTGGTCATGAATATTTGCGCTGATTCCGCGCTCGGCGAGGTCCTAACTCACTCCGTCAAACCCGACCCGGGTGTCTGGCCCGAATTCGACGCCGGATTCGGATCCTCTTCCGGTTTTCTACCCACCATTTCGCCAACTTGTAGCAGAGGCGGAGACTTGGTTTCACCCAAGGAAAACATGGCCAGTGCGAAAGAAAACACTAAGAAGAGAAAACCTCAGAACTCCAAGGTTGTTGCGGCGAGTGATAATAAACAGGACAAGAGAGTCAAAGCAAGTGGTGAAGAAGGAGAATCCAAAGTAACAGAGCAAACCAGCAACAAGAATGGCAAATCCAACGCAAATAAAAACAACAACAGAGAAACAACCTCTGCGGAGACTTCCAAGGATAATTCGAAAGGCTCCGAGGTTCAAAATCAGAAGCCAGAGTACATTCATGTCCGAGCGCGTCGTGGACAAGCCACGGATAGTCATAGCTTAGCTGAAAGAGTTAGGAGGGAGAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAGGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGATATGAGTATGAGTAACAACCCTTCGTATCTACCATTTAATTCAGCGCAGCAACTTGTATCGTGCTGTGGTGGACTAATAAACAACATGGGGATAAGCCCTCCAAACATGGGACTCCGAAGGAACATTAGTACTAGCCCTGTACCTTTGCCCGAAACGTTTCTTGACTCGTCCTGTTTCACTGTAGGTTTTTTTACCCTCTCTTGTGTATGTAATGTTCTTCTAATGATTAGTCTTGTCCAAATATTGATCTGAATTTTTTTGCACTGCAGCAAATTCTACCCTCCTCAAATTGGGAAGGTGGTGATTTCCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGCGAACAGCATCTTTTCCTTCTCAGCCATTTACAGGTCTAGTTGAAGCTAGCAATCTAAAGATGGAGATGTAAACCAGATCGATCATCCATTATAATTTGTTGGTGGATTAGGTCACTCGGAGTGCCTTTGTCATGATTTTTTCTTTTTTCTTTTTTCGAGTACATAACATATATTGGTTGTATACTGCTCCGTAGAATAAATAAGATCATATTAATACCTGTTAACTTCAATCACCTGCATTTGCACGTTTAAAGTACT

>Glyma11g12450.3   sequence type=transcript   gene model=Glyma11g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACGAAACAAATATAATATAATCTTCCCACGTTTATATATACCCACTCCTATCCCTCTCCTCATCCTTAACAACATTTCACGCTTCCTCCTCCTCTGTTTCTCTCGCACACTCTGACCCTACGTCGTTTTTTCTTTTTGTTTTCCAAACACACACACACCGCGTACTACAACTACAACAACGCCGTGCCTAATCCTTAAGAATAACAAACAACAGCCAACCATGTTGCATTGTCTCAACACTTCGGGGAATCTAGGAGCCACCTGTTCGGACATGACAGTGTTGGAAAGACAACGGGAAGCAACCATCAAGTGGCAGCAACACCTCCAGAACAACCAACCACCCTACTTAACGGACTTTAACGTTAACGTTAACGCCGTCTTCTCTTCTTCTTCTTCTTCTTCTCAGAGTCAGGGCCTGGTCATGAATATTTGCGCTGATTCCGCGCTCGGCGAGGTCCTAACTCACTCCGTCAAACCCGACCCGGGTGTCTGGCCCGAATTCGACGCCGGATTCGGATCCTCTTCCGGTTTTCTACCCACCATTTCGCCAACTTGTAGCAGAGGCGGAGACTTGGTTTCACCCAAGGAAAACATGGCCAGTGCGAAAGAAAACACTAAGAAGAGAAAACCTCAGAACTCCAAGGTAGTTGTTGCGGCGAGTGATAATAAACAGGACAAGAGAGTCAAAGCAAGTGGTGAAGAAGGAGAATCCAAAGTAACAGAGCAAACCAGCAACAAGAATGGCAAATCCAACGCAAATAAAAACAACAACAGAGAAACAACCTCTGCGGAGACTTCCAAGGATAATTCGAAAGGCTCCGAGGTTCAAAATCAGAAGCCAGAGTACATTCATGTCCGAGCGCGTCGTGGACAAGCCACGGATAGTCATAGCTTAGCTGAAAGAGTTAGGAGGGAGAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAGGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGATATGAGTATGAGTAACAACCCTTCGTATCTACCATTTAATTCAGCGCAGCAACTTGTATCGTGCTGTGGTGGACTAATAAACAACATGGGGATAAGCCCTCCAAACATGGGACTCCGAAGGAACATTAGTACTAGCCCTGTACCTTTGCCCGAAACGTTTCTTGACTCGTCCTGTTTCACTCAAATTCTACCCTCCTCAAATTGGGAAGGTGGTGATTTCCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGCGAACAGCATCTTTTCCTTCTCAGCCATTTACAGGTCTAGTTGAAGCTAGCAATCTAAAGATGGAGATGTAAACCAGATCGATCATCCATTATAATTTGTTGGTGGATTAGGTCACTCGGAGTGCCTTTGTCATGATTTTTTCTTTTTTCTTTTTTCGAGTACATAACATATATTGGTTGTATACTGCTCCGTAGAATAAATAAGATCATATTAATACCTGTTAACTTCAATCACCTGCATTTGCACGTTTAAAGTACT

Coding sequences of Glyma11g12450

Limit To All Plant Sequences

>Glyma11g12450.1   sequence type=CDS   gene model=Glyma11g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCATTGTCTCAACACTTCGGGGAATCTAGGAGCCACCTGTTCGGACATGACAGTGTTGGAAAGACAACGGGAAGCAACCATCAAGTGGCAGCAACACCTCCAGAACAACCAACCACCCTACTTAACGGACTTTAACGTTAACGTTAACGCCGTCTTCTCTTCTTCTTCTTCTTCTTCTCAGAGTCAGGGCCTGGTCATGAATATTTGCGCTGATTCCGCGCTCGGCGAGGTCCTAACTCACTCCGTCAAACCCGACCCGGGTGTCTGGCCCGAATTCGACGCCGGATTCGGATCCTCTTCCGGTTTTCTACCCACCATTTCGCCAACTTGTAGCAGAGGCGGAGACTTGGTTTCACCCAAGGAAAACATGGCCAGTGCGAAAGAAAACACTAAGAAGAGAAAACCTCAGAACTCCAAGGTTGTTGCGGCGAGTGATAATAAACAGGACAAGAGAGTCAAAGCAAGTGGTGAAGAAGGAGAATCCAAAGTAACAGAGCAAACCAGCAACAAGAATGGCAAATCCAACGCAAATAAAAACAACAACAGAGAAACAACCTCTGCGGAGACTTCCAAGGATAATTCGAAAGGCTCCGAGGTTCAAAATCAGAAGCCAGAGTACATTCATGTCCGAGCGCGTCGTGGACAAGCCACGGATAGTCATAGCTTAGCTGAAAGAGTTAGGAGGGAGAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAGGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGATATGAGTATGAGTAACAACCCTTCGTATCTACCATTTAATTCAGCGCAGCAACTTGTATCGTGCTGTGGTGGACTAATAAACAACATGGGGATAAGCCCTCCAAACATGGGACTCCGAAGGAACATTAGTACTAGCCCTGTACCTTTGCCCGAAACGTTTCTTGACTCGTCCTGTTTCACTCAAATTCTACCCTCCTCAAATTGGGAAGGTGGTGATTTCCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGCGAACAGCATCTTTTCCTTCTCAGCCATTTACAGGTCTAGTTGAAGCTAGCAATCTAAAGATGGAGATGTAA

>Glyma11g12450.2   sequence type=CDS   gene model=Glyma11g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCATTGTCTCAACACTTCGGGGAATCTAGGAGCCACCTGTTCGGACATGACAGTGTTGGAAAGACAACGGGAAGCAACCATCAAGTGGCAGCAACACCTCCAGAACAACCAACCACCCTACTTAACGGACTTTAACGTTAACGTTAACGCCGTCTTCTCTTCTTCTTCTTCTTCTTCTCAGAGTCAGGGCCTGGTCATGAATATTTGCGCTGATTCCGCGCTCGGCGAGGTCCTAACTCACTCCGTCAAACCCGACCCGGGTGTCTGGCCCGAATTCGACGCCGGATTCGGATCCTCTTCCGGTTTTCTACCCACCATTTCGCCAACTTGTAGCAGAGGCGGAGACTTGGTTTCACCCAAGGAAAACATGGCCAGTGCGAAAGAAAACACTAAGAAGAGAAAACCTCAGAACTCCAAGGTTGTTGCGGCGAGTGATAATAAACAGGACAAGAGAGTCAAAGCAAGTGGTGAAGAAGGAGAATCCAAAGTAACAGAGCAAACCAGCAACAAGAATGGCAAATCCAACGCAAATAAAAACAACAACAGAGAAACAACCTCTGCGGAGACTTCCAAGGATAATTCGAAAGGCTCCGAGGTTCAAAATCAGAAGCCAGAGTACATTCATGTCCGAGCGCGTCGTGGACAAGCCACGGATAGTCATAGCTTAGCTGAAAGAGTTAGGAGGGAGAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAGGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGATATGAGTATGAGTAACAACCCTTCGTATCTACCATTTAATTCAGCGCAGCAACTTGTATCGTGCTGTGGTGGACTAATAAACAACATGGGGATAAGCCCTCCAAACATGGGACTCCGAAGGAACATTAGTACTAGCCCTGTACCTTTGCCCGAAACGTTTCTTGACTCGTCCTGTTTCACTGTAGGTTTTTTTACCCTCTCTTGTGTATGTAATGTTCTTCTAATGATTAGTCTTGTCCAAATATTGATCTGA

>Glyma11g12450.3   sequence type=CDS   gene model=Glyma11g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCATTGTCTCAACACTTCGGGGAATCTAGGAGCCACCTGTTCGGACATGACAGTGTTGGAAAGACAACGGGAAGCAACCATCAAGTGGCAGCAACACCTCCAGAACAACCAACCACCCTACTTAACGGACTTTAACGTTAACGTTAACGCCGTCTTCTCTTCTTCTTCTTCTTCTTCTCAGAGTCAGGGCCTGGTCATGAATATTTGCGCTGATTCCGCGCTCGGCGAGGTCCTAACTCACTCCGTCAAACCCGACCCGGGTGTCTGGCCCGAATTCGACGCCGGATTCGGATCCTCTTCCGGTTTTCTACCCACCATTTCGCCAACTTGTAGCAGAGGCGGAGACTTGGTTTCACCCAAGGAAAACATGGCCAGTGCGAAAGAAAACACTAAGAAGAGAAAACCTCAGAACTCCAAGGTAGTTGTTGCGGCGAGTGATAATAAACAGGACAAGAGAGTCAAAGCAAGTGGTGAAGAAGGAGAATCCAAAGTAACAGAGCAAACCAGCAACAAGAATGGCAAATCCAACGCAAATAAAAACAACAACAGAGAAACAACCTCTGCGGAGACTTCCAAGGATAATTCGAAAGGCTCCGAGGTTCAAAATCAGAAGCCAGAGTACATTCATGTCCGAGCGCGTCGTGGACAAGCCACGGATAGTCATAGCTTAGCTGAAAGAGTTAGGAGGGAGAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAGGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGATATGAGTATGAGTAACAACCCTTCGTATCTACCATTTAATTCAGCGCAGCAACTTGTATCGTGCTGTGGTGGACTAATAAACAACATGGGGATAAGCCCTCCAAACATGGGACTCCGAAGGAACATTAGTACTAGCCCTGTACCTTTGCCCGAAACGTTTCTTGACTCGTCCTGTTTCACTCAAATTCTACCCTCCTCAAATTGGGAAGGTGGTGATTTCCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGCGAACAGCATCTTTTCCTTCTCAGCCATTTACAGGTCTAGTTGAAGCTAGCAATCTAAAGATGGAGATGTAA

Predicted protein sequences of Glyma11g12450

Limit To All Plant Sequences

>Glyma11g12450.1   sequence type=predicted peptide   gene model=Glyma11g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLHCLNTSGNLGATCSDMTVLERQREATIKWQQHLQNNQPPYLTDFNVNVNAVFSSSSSSSQSQGLVMNICADSALGEVLTHSVKPDPGVWPEFDAGFGSSSGFLPTISPTCSRGGDLVSPKENMASAKENTKKRKPQNSKVVAASDNKQDKRVKASGEEGESKVTEQTSNKNGKSNANKNNNRETTSAETSKDNSKGSEVQNQKPEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNLDELFTKEVFPSCAQSFPNIGMPLDMSMSNNPSYLPFNSAQQLVSCCGGLINNMGISPPNMGLRRNISTSPVPLPETFLDSSCFTQILPSSNWEGGDFQSLYNVAFDQGRTASFPSQPFTGLVEASNLKMEM*

>Glyma11g12450.2   sequence type=predicted peptide   gene model=Glyma11g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLHCLNTSGNLGATCSDMTVLERQREATIKWQQHLQNNQPPYLTDFNVNVNAVFSSSSSSSQSQGLVMNICADSALGEVLTHSVKPDPGVWPEFDAGFGSSSGFLPTISPTCSRGGDLVSPKENMASAKENTKKRKPQNSKVVAASDNKQDKRVKASGEEGESKVTEQTSNKNGKSNANKNNNRETTSAETSKDNSKGSEVQNQKPEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNLDELFTKEVFPSCAQSFPNIGMPLDMSMSNNPSYLPFNSAQQLVSCCGGLINNMGISPPNMGLRRNISTSPVPLPETFLDSSCFTVGFFTLSCVCNVLLMISLVQILI*

>Glyma11g12450.3   sequence type=predicted peptide   gene model=Glyma11g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLHCLNTSGNLGATCSDMTVLERQREATIKWQQHLQNNQPPYLTDFNVNVNAVFSSSSSSSQSQGLVMNICADSALGEVLTHSVKPDPGVWPEFDAGFGSSSGFLPTISPTCSRGGDLVSPKENMASAKENTKKRKPQNSKVVVAASDNKQDKRVKASGEEGESKVTEQTSNKNGKSNANKNNNRETTSAETSKDNSKGSEVQNQKPEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNLDELFTKEVFPSCAQSFPNIGMPLDMSMSNNPSYLPFNSAQQLVSCCGGLINNMGISPPNMGLRRNISTSPVPLPETFLDSSCFTQILPSSNWEGGDFQSLYNVAFDQGRTASFPSQPFTGLVEASNLKMEM*

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