SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G16365 | AT | Annotation by Michelle Graham. TAIR10: F-box family protein | chr2:7074940-7076389 FORWARD LENGTH=455 | SoyBase | E_val: 7.00E-32 | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0080167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to karrikin | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_UPI000233C400 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C400 related cluster n=1 Tax=unknown RepID=UPI000233C400 | SoyBase | E_val: 0 | ISS |
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Glyma11g12421 not represented in the dataset |
Glyma11g12421 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g04640 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g116700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g12421.2 sequence type=transcript gene model=Glyma11g12421 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGACTGTTGATTTTAGGCAGTTGCACACTTTCCTTCATCTTAAGGTTTTCCTTTGTCGTTCATTTCTCTTCATATTTCATTTCTCAACTCTCTGTTTCCCATCGCTCTTCTGCGTTTCTGAATTTTGAAGTCAATGAAAGCTGAACGTGTGAGTTCCCGGAGAAAGTCAATCAGTCTATCAATCATGATGCCTGATGATGTTGCTGCACAAGCATTTCATGATGGTGATAGGGTTGAAGCTCAGGCAATGCATAGGAATCAATCGGCGTGGATGGCTCATTGGAAGCAAACAAGTTATAAATCAGCAACCCCTGCTTGCAAGAATTTAGGGGTTGATTCTGAGGTGAGAAAAGAGAAAGAAGACAGCGGTGCTGAGCAGCATGATTTACTTGGTGGGTTAGATAGTTCCATGCGTGCTGGAGCAGTTGGAGAAGCAGCTAGGGCCACAAGTGTTACCTTCAGCAACGAGGCAGACGATGAAAAATCTAAGAAAGCAGGCTGTGATCCCAAACCATTTCCTACATTCAAATTTTCTCGAAAGTTAGATGGAAGATTGTCTCTGCAGAGGGAACAGCACGACGGGGAAGGTGGAAAATCTGAAACCGAACCCTGCTCTGGAGATGGCAATGTTTCTCTCAACAGAGCTGGGACTTCTGGAGTAGGCTTATCATTAGCATCTGCACATGCTCCTCCTAAAATAGAAGCACTAGCAAAAGAGTGCCAAGTATTGTCTCAAGAAGTTTTACCGACAGCTCTGGTGATGAAATCTCCTTGGGATGTTGAACAGAAGAACCTAGCTGTTTCAACATCACCATGGAATGACTTTGCAAAATCAGCTTCTGACATAGTGCCAAATGGACGTGACAAAGGGAAAACTGTGATGCCCCAGTTCACCCATGAACCTTTTGAAATTTGTCAATCAAGCTACCATTTAGCATCCAGAGGGCAGTTCACAAGTACCAAATATCATACCTTTTCATCTCTTTTAATCAGCGAGAAGAAAATGAGTAGCCTCTTAGATCCTCAAAAATCTTCTTTTTCAAGATGGATGCAAGGTGGTATTGCTCATTTACCGCATGATTCCATGGCTGGTAGTGATGATAGATTATACTTTATTCGTGGTCAGCACCATGAGATTGAAAAATATGTTGCTAATCCAAATATTACATGCCAGACTGAATCCTCAAAGTCAGCTAAACCACAAAACCTTTATGGACTAAGCTCTTTGGTTGCACAAGTGCCTTGTTCTATTCGTGATGTGGGGTCTATGAAGATATACACCAGTATAGATTCGGTTGAAGAATCGTCAAGAGGTCATCCCAAAATTTCCCAGACAACTCACCATTTTCTAATGTCGAAAAAAACTGATGTTAACTTCTCTGACAGAGGTCAGTTCTTTAGAGAGCCAATAGCACCTATCAAATCCAAGGGAAGTGCTTTCAATGAGATCCTTGATTTCTCTCCACCCACGAGTGGCCATGCTCTGAAAGGTCTGAAGCTGGAAGATCTAGGGAGCCCCATAAAGAGTGAAGGAAAGGAAAATGTCCAAGATTTCAAATATCCAACATGCCTGAAGAATGAGTCATCTGCTGAAACAGATACTATGGACATGGATGCTTTACATAAGAATAATCCTCCCGGTGATGTTCCATTTCAAACAAATAAGTGCTCCAAGGATAGTCAAAACTCGCTTACGTCTCAAGGTGCAACAATTTCTGCTAGAGAGAAAACCATAGCAAAATCAGTGAATACAACAATACCAGATATAAACCAAGAGCCTCAGGAGCTTCTTACTGAGGAAAGTCCTGTGGTTGACAGGGAGACTAGCACATCAAGAACCCACAGCCTTGATTTGGATCACTTTCTTTCTCATGCAGATGAGCATGCTAGGTCAAGTTCTGGCAATAGTTCTTTAAGAACAGACCCAAGCAGCAGATGGGTCAAAAGACTCAAGTTGTGCACATTGGGCTCTGCTAATGGTACTGAGAGTACAAAAATTGGAGAAACGTCTTCACATGAAAAAGTTAACAATATACTTGGCAAAATTCTGAAAGATAGCAAAACTAGTTTGGAACCCAAAATGGTACATCATGCTGAAGGACAGATGGTACCGGATCTATCTACAACAGTATCAACAAATGGCAAGTCCTCTTTGACTGCAGCGAAGAAAACTGTAGAAATTACCCTTTCACATCCCTGGATTCAGAGATGGAGTCATGATCGTTCTGCATCTTCCCAAAAGAGGCATGAAATAGGGGAGCTTCATGAACCAAAGTCTTCAACTGCTGTGCTAAAAGAGTTAAAAAAAAAACAGTTTCCGAGCATTGCTGCCATGGCCCTGATGGGAAAAGCAATGAACAATTTGAATCCCTCTGAGCTGATAAAAAAGGGACCTGTGATAGTTTGGAATATGAAGGGATTTTGATATTGTTGGCCATTGGTGATATCAATTTCTCATGAAGTTTATGGTGGGAGATTCTCAGGATTAGTTTTAGAGGAATTAGGAATACATGTTATGGCATTATTATGGCTGCTTACTTCTGTACTCAGTCATGCGGAGAAGTGAGATATGCTTAGGTCATGTGTATGTCACAATCATGTTGAATAGCTGCTTATCCTAATTCCTTGTTCTCCTCAGATTTGGCTTAATTGAAACAAAGCGGTGCATGCATCTGAAGAAGTTATGTATCGGAGCTTGCATTTTTTGTATGCAATGTACTGAATATACTCATGCAATAACTCAGGAAGTGGGAAATGTCTCAAGACGGGTTGAATCCTGTCTTACCACCCAAGTCATATTGCCAAGTTTAGCATATATTAACAGCGTTGATAGTACAGGTTTGATGGAATATCATGTTGAATGAGTTTCATATACGATTGTGCACCTTTTGGTTGAATTTTTCATTCGTGAAAAATAGCTTCCTCATTGTGATTACTTCTGCTACTTTTTTGAGCTGAAAGTTATTTAAGACTATAAATAGCAAAACTTTGTCTACTTGTTTAATACCTTGTTC
>Glyma11g12421.1 sequence type=CDS gene model=Glyma11g12421 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGCTGAACGTGTGAGTTCCCGGAGAAAGTCAATCAGTCTATCAATCATGATGCCTGATGATGTTGCTGCACAAGCATTTCATGATGGTGATAGGGTTGAAGCTCAGGCAATGCATAGGAATCAATCGGCGTGGATGGCTCATTGGAAGCAAACAAGTTATAAATCAGCAACCCCTGCTTGCAAGAATTTAGGGGTTGATTCTGAGGTGAGAAAAGAGAAAGAAGACAGCGGTGCTGAGCAGCATGATTTACTTGGTGGGTTAGATAGTTCCATGCGTGCTGGAGCAGTTGGAGAAGCAGCTAGGGCCACAAGTGTTACCTTCAGCAACGAGGCAGACGATGAAAAATCTAAGAAAGCAGGCTGTGATCCCAAACCATTTCCTACATTCAAATTTTCTCGAAAGTTAGATGGAAGATTGTCTCTGCAGAGGGAACAGCACGACGGGGAAGGTGGAAAATCTGAAACCGAACCCTGCTCTGGAGATGGCAATGTTTCTCTCAACAGAGCTGGGACTTCTGGAGTAGGCTTATCATTAGCATCTGCACATGCTCCTCCTAAAATAGAAGCACTAGCAAAAGAGTGCCAAGTATTGTCTCAAGAAGTTTTACCGACAGCTCTGGTGATGAAATCTCCTTGGGATGTTGAACAGAAGAACCTAGCTGTTTCAACATCACCATGGAATGACTTTGCAAAATCAGCTTCTGACATAGTGCCAAATGGACGTGACAAAGGGAAAACTGTGATGCCCCAGTTCACCCATGAACCTTTTGAAATTTGTCAATCAAGCTACCATTTAGCATCCAGAGGGCAGTTCACAAGTACCAAATATCATACCTTTTCATCTCTTTTAATCAGCGAGAAGAAAATGAGTAGCCTCTTAGATCCTCAAAAATCTTCTTTTTCAAGATGGATGCAAGGTGGTATTGCTCATTTACCGCATGATTCCATGGCTGGTAGTGATGATAGATTATACTTTATTCGTGGTCAGCACCATGAGATTGAAAAATATGTTGCTAATCCAAATATTACATGCCAGACTGAATCCTCAAAGTCAGCTAAACCACAAAACCTTTATGGACTAAGCTCTTTGGTTGCACAAGTGCCTTGTTCTATTCGTGATGTGGGGTCTATGAAGATATACACCAGTATAGATTCGGTTGAAGAATCGTCAAGAGGTCATCCCAAAATTTCCCAGACAACTCACCATTTTCTAATGTCGAAAAAAACTGATGTTAACTTCTCTGACAGAGGTCAGTTCTTTAGAGAGCCAATAGCACCTATCAAATCCAAGGGAAGTGCTTTCAATGAGATCCTTGATTTCTCTCCACCCACGAGTGGCCATGCTCTGAAAGGTCTGAAGCTGGAAGATCTAGGGAGCCCCATAAAGAGTGAAGGAAAGGAAAATGTCCAAGATTTCAAATATCCAACATGCCTGAAGAATGAGTCATCTGCTGAAACAGATACTATGGACATGGATGCTTTACATAAGAATAATCCTCCCGGTGATGTTCCATTTCAAACAAATAAGTGCTCCAAGGATAGTCAAAACTCGCTTACGTCTCAAGGTGCAACAATTTCTGCTAGAGAGAAAACCATAGCAAAATCAGTGAATACAACAATACCAGATATAAACCAAGAGCCTCAGGAGCTTCTTACTGAGGAAAGTCCTGTGGTTGACAGGGAGACTAGCACATCAAGAACCCACAGCCTTGATTTGGATCACTTTCTTTCTCATGCAGATGAGCATGCTAGGTCAAGTTCTGGCAATAGTTCTTTAAGAACAGACCCAAGCAGCAGATGGGTCAAAAGACTCAAGTTGTGCACATTGGGCTCTGCTAATGGTACTGAGAGTACAAAAATTGGAGAAACGTCTTCACATGAAAAAGTTAACAATATACTTGGCAAAATTCTGAAAGATAGCAAAACTAGTTTGGAACCCAAAATGGTACATCATGCTGAAGGACAGATGGTACCGGATCTATCTACAACAGTATCAACAAATGGCAAGTCCTCTTTGACTGCAGCGAAGAAAACTGTAGAAATTACCCTTTCACATCCCTGGATTCAGAGATGGAGTCATGATCGTTCTGCATCTTCCCAAAAGAGGCATGAAATAGGGGAGCTTCATGAACCAAAGTCTTCAACTGCTGTGCTAAAAGAGTTAAAAAAAAAACAGTTTCCGAGCATTGCTGCCATGGCCCTGATGGGAAAAGCAATGAACAATTTGAATCCCTCTGAGCTGATAAAAAAGGGACCTGTGATAGTTTGGAATATGAAGGGATTTTGA >Glyma11g12421.2 sequence type=CDS gene model=Glyma11g12421 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGCTGAACGTGTGAGTTCCCGGAGAAAGTCAATCAGTCTATCAATCATGATGCCTGATGATGTTGCTGCACAAGCATTTCATGATGGTGATAGGGTTGAAGCTCAGGCAATGCATAGGAATCAATCGGCGTGGATGGCTCATTGGAAGCAAACAAGTTATAAATCAGCAACCCCTGCTTGCAAGAATTTAGGGGTTGATTCTGAGGTGAGAAAAGAGAAAGAAGACAGCGGTGCTGAGCAGCATGATTTACTTGGTGGGTTAGATAGTTCCATGCGTGCTGGAGCAGTTGGAGAAGCAGCTAGGGCCACAAGTGTTACCTTCAGCAACGAGGCAGACGATGAAAAATCTAAGAAAGCAGGCTGTGATCCCAAACCATTTCCTACATTCAAATTTTCTCGAAAGTTAGATGGAAGATTGTCTCTGCAGAGGGAACAGCACGACGGGGAAGGTGGAAAATCTGAAACCGAACCCTGCTCTGGAGATGGCAATGTTTCTCTCAACAGAGCTGGGACTTCTGGAGTAGGCTTATCATTAGCATCTGCACATGCTCCTCCTAAAATAGAAGCACTAGCAAAAGAGTGCCAAGTATTGTCTCAAGAAGTTTTACCGACAGCTCTGGTGATGAAATCTCCTTGGGATGTTGAACAGAAGAACCTAGCTGTTTCAACATCACCATGGAATGACTTTGCAAAATCAGCTTCTGACATAGTGCCAAATGGACGTGACAAAGGGAAAACTGTGATGCCCCAGTTCACCCATGAACCTTTTGAAATTTGTCAATCAAGCTACCATTTAGCATCCAGAGGGCAGTTCACAAGTACCAAATATCATACCTTTTCATCTCTTTTAATCAGCGAGAAGAAAATGAGTAGCCTCTTAGATCCTCAAAAATCTTCTTTTTCAAGATGGATGCAAGGTGGTATTGCTCATTTACCGCATGATTCCATGGCTGGTAGTGATGATAGATTATACTTTATTCGTGGTCAGCACCATGAGATTGAAAAATATGTTGCTAATCCAAATATTACATGCCAGACTGAATCCTCAAAGTCAGCTAAACCACAAAACCTTTATGGACTAAGCTCTTTGGTTGCACAAGTGCCTTGTTCTATTCGTGATGTGGGGTCTATGAAGATATACACCAGTATAGATTCGGTTGAAGAATCGTCAAGAGGTCATCCCAAAATTTCCCAGACAACTCACCATTTTCTAATGTCGAAAAAAACTGATGTTAACTTCTCTGACAGAGGTCAGTTCTTTAGAGAGCCAATAGCACCTATCAAATCCAAGGGAAGTGCTTTCAATGAGATCCTTGATTTCTCTCCACCCACGAGTGGCCATGCTCTGAAAGGTCTGAAGCTGGAAGATCTAGGGAGCCCCATAAAGAGTGAAGGAAAGGAAAATGTCCAAGATTTCAAATATCCAACATGCCTGAAGAATGAGTCATCTGCTGAAACAGATACTATGGACATGGATGCTTTACATAAGAATAATCCTCCCGGTGATGTTCCATTTCAAACAAATAAGTGCTCCAAGGATAGTCAAAACTCGCTTACGTCTCAAGGTGCAACAATTTCTGCTAGAGAGAAAACCATAGCAAAATCAGTGAATACAACAATACCAGATATAAACCAAGAGCCTCAGGAGCTTCTTACTGAGGAAAGTCCTGTGGTTGACAGGGAGACTAGCACATCAAGAACCCACAGCCTTGATTTGGATCACTTTCTTTCTCATGCAGATGAGCATGCTAGGTCAAGTTCTGGCAATAGTTCTTTAAGAACAGACCCAAGCAGCAGATGGGTCAAAAGACTCAAGTTGTGCACATTGGGCTCTGCTAATGGTACTGAGAGTACAAAAATTGGAGAAACGTCTTCACATGAAAAAGTTAACAATATACTTGGCAAAATTCTGAAAGATAGCAAAACTAGTTTGGAACCCAAAATGGTACATCATGCTGAAGGACAGATGGTACCGGATCTATCTACAACAGTATCAACAAATGGCAAGTCCTCTTTGACTGCAGCGAAGAAAACTGTAGAAATTACCCTTTCACATCCCTGGATTCAGAGATGGAGTCATGATCGTTCTGCATCTTCCCAAAAGAGGCATGAAATAGGGGAGCTTCATGAACCAAAGTCTTCAACTGCTGTGCTAAAAGAGTTAAAAAAAAAACAGTTTCCGAGCATTGCTGCCATGGCCCTGATGGGAAAAGCAATGAACAATTTGAATCCCTCTGAGCTGATAAAAAAGGGACCTGTGATAGTTTGGAATATGAAGGGATTTTGA
>Glyma11g12421.1 sequence type=predicted peptide gene model=Glyma11g12421 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKAERVSSRRKSISLSIMMPDDVAAQAFHDGDRVEAQAMHRNQSAWMAHWKQTSYKSATPACKNLGVDSEVRKEKEDSGAEQHDLLGGLDSSMRAGAVGEAARATSVTFSNEADDEKSKKAGCDPKPFPTFKFSRKLDGRLSLQREQHDGEGGKSETEPCSGDGNVSLNRAGTSGVGLSLASAHAPPKIEALAKECQVLSQEVLPTALVMKSPWDVEQKNLAVSTSPWNDFAKSASDIVPNGRDKGKTVMPQFTHEPFEICQSSYHLASRGQFTSTKYHTFSSLLISEKKMSSLLDPQKSSFSRWMQGGIAHLPHDSMAGSDDRLYFIRGQHHEIEKYVANPNITCQTESSKSAKPQNLYGLSSLVAQVPCSIRDVGSMKIYTSIDSVEESSRGHPKISQTTHHFLMSKKTDVNFSDRGQFFREPIAPIKSKGSAFNEILDFSPPTSGHALKGLKLEDLGSPIKSEGKENVQDFKYPTCLKNESSAETDTMDMDALHKNNPPGDVPFQTNKCSKDSQNSLTSQGATISAREKTIAKSVNTTIPDINQEPQELLTEESPVVDRETSTSRTHSLDLDHFLSHADEHARSSSGNSSLRTDPSSRWVKRLKLCTLGSANGTESTKIGETSSHEKVNNILGKILKDSKTSLEPKMVHHAEGQMVPDLSTTVSTNGKSSLTAAKKTVEITLSHPWIQRWSHDRSASSQKRHEIGELHEPKSSTAVLKELKKKQFPSIAAMALMGKAMNNLNPSELIKKGPVIVWNMKGF* >Glyma11g12421.2 sequence type=predicted peptide gene model=Glyma11g12421 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKAERVSSRRKSISLSIMMPDDVAAQAFHDGDRVEAQAMHRNQSAWMAHWKQTSYKSATPACKNLGVDSEVRKEKEDSGAEQHDLLGGLDSSMRAGAVGEAARATSVTFSNEADDEKSKKAGCDPKPFPTFKFSRKLDGRLSLQREQHDGEGGKSETEPCSGDGNVSLNRAGTSGVGLSLASAHAPPKIEALAKECQVLSQEVLPTALVMKSPWDVEQKNLAVSTSPWNDFAKSASDIVPNGRDKGKTVMPQFTHEPFEICQSSYHLASRGQFTSTKYHTFSSLLISEKKMSSLLDPQKSSFSRWMQGGIAHLPHDSMAGSDDRLYFIRGQHHEIEKYVANPNITCQTESSKSAKPQNLYGLSSLVAQVPCSIRDVGSMKIYTSIDSVEESSRGHPKISQTTHHFLMSKKTDVNFSDRGQFFREPIAPIKSKGSAFNEILDFSPPTSGHALKGLKLEDLGSPIKSEGKENVQDFKYPTCLKNESSAETDTMDMDALHKNNPPGDVPFQTNKCSKDSQNSLTSQGATISAREKTIAKSVNTTIPDINQEPQELLTEESPVVDRETSTSRTHSLDLDHFLSHADEHARSSSGNSSLRTDPSSRWVKRLKLCTLGSANGTESTKIGETSSHEKVNNILGKILKDSKTSLEPKMVHHAEGQMVPDLSTTVSTNGKSSLTAAKKTVEITLSHPWIQRWSHDRSASSQKRHEIGELHEPKSSTAVLKELKKKQFPSIAAMALMGKAMNNLNPSELIKKGPVIVWNMKGF*
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