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Report for Sequence Feature Glyma11g12186

Feature Type:gene_model
Chromosome:Gm11
Start:8698766
stop:8709000
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g12186
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75820AT Annotation by Michelle Graham. TAIR10: Leucine-rich receptor-like protein kinase family protein | chr1:28463631-28466652 REVERSE LENGTH=980 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007169GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway SoyBaseN/AISS
GO:0007172GO-bp Annotation by Michelle Graham. GO Biological Process: signal complex assembly SoyBaseN/AISS
GO:0009934GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem structural organization SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004702GO-mf Annotation by Michelle Graham. GO Molecular Function: receptor signaling protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0033612GO-mf Annotation by Michelle Graham. GO Molecular Function: receptor serine/threonine kinase binding SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
GO:0043621GO-mf Annotation by Michelle Graham. GO Molecular Function: protein self-association SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF818Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
UniRef100_Q9M6A8UniRef Annotation by Michelle Graham. Best UniRef hit: Receptor protein kinase-like protein n=3 Tax=Glycine RepID=Q9M6A8_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9M6A8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Receptor protein kinase-like protein n=3 Tax=Glycine RepID=Q9M6A8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g12186
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g12186 not represented in the dataset
Glyma11g12186 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g12186
ParalogEvidenceComments
Glyma12g04390 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g12186 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g114100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g12186
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g12186
>Glyma11g12186.1   sequence type=CDS   gene model=Glyma11g12186   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGGAGACAGAGCCAAAGACGACGCGCTCCATGACTGGAAGTTTTCCACGTCGCTTTCTGCACACTGTTTCTTTTCAGGTGTATCTTGCGACCAAGAACTTCGAGTTGTTGCTATCAACGTCTCCTTTGTTCCTCTCTTCGGCCACGTTCCGCCGGAGATCGGAGAATTGGACAAACTTGAAAACCTCACCATCTCGCAGAACAACCTCACCGGCGAACTTCCCAAGGAGCTCGCCGCCCTCACTTCCCTCAAGCACCTCAACATCTCTCACAACGTCTTCTCCGGCTATTTTCCCGGCAAAATAATTCTTCCGATGACCGAACTCGAGGTCCTCGACGTCTACGACAACAACTTCACCGGATCGCTTCCGGAAGAGTTCGTGAAACTGGAGAAATTGAAATACCTGAAGCTCGACGGAAACTATTTCTCCGGAAGCATACCGGAGAGTTACTCGGAGTTTAAGAGCTTGGAGTTTTTAAGCTTAAGCACCAATAGCTTATCGGGGAATATTCCGAAGAGTTTGTCTAAGTTGAAGACGCTGAGGATTCTCAAGCTCGGATACAACAACGCTTACGAAGGCGGAATTCCACCGGAGTTCGGCACCATGGAATCTCTGAAATACCTTGACCTCTCAAGCTGCAACCTCAGCGGCGAGATTCCACCGAGTCTAGCAAATATGAGAAACCTCGACACGTTGTTCTTGCAAATGAATAACCTCACCGGAACCATTCCGTCTGAGCTCTCCGACATGGTGAGCCTCATGTCACTGGATCTCTCCTTCAACGGCCTCACCGGGGAGATACCGACGCGCTTCTCTCAGCTGAAAAACCTCACTCTGATGAACTTCTTCCACAACAATCTCCGAGGCTCAGTTCCCTCCTTCGTCGGCGAGCTTCCTAATCTGGAAACGCTGCAGCTCTGGGAGAACAATTTCTCCTCTGAGCTCCCGCAGAACCTGGGGCAAAACGGGAAGTTCAAGTTCTTCGACGTCACGAAGAATCACTTCAGCGGGTTGATCCCTCGGGATTTGTGCAAGAGTGGGAGGTTACAAACGTTCTTGATCACAGATAACTTCTTCCATGGTCCAATCCCTAACGAGATTGCTAACTGCAAGTCTCTAACCAAGATCCGAGCCTCCAATAACTACCTTAACGGCGCAGTTCCGTCAGGGATTTTCAAGCTACCTTCCGTCACGATAATCGAGTTGGCCAATAACCGTTTTAACGGAGAACTGCCTCCCGAAATTTCCGGCGATTCACTCGGGATTCTCACTCTTTCCAACAACTTATTCACTGGGAAAATTCCCCCAGCGTTGAAGAACTTAAGGGCACTGCAGACTCTGTCACTTGACACGAACGAATTCCTTGGAGAAATCCCGGGGGAGGTTTTTGACCTACCAATGCTGACTGTGGTCAACATAAGCGGCAACAATCTCACCGGACCAATCCCAACGACGTTTACTCGCTGCGTTTCACTCGCCGCCGTTGATCTTAGCCGGAACATGCTTGACGGGGAGATTCCCAAGGGGATGAAAAACCTAACGGATTTAAGCATTTTCAATGTGTCGATAAACCAAATCTCAGGGTCAGTCCCAGACGAGATTCGCTTCATGTTGAGTCTCACCACGCTGGATCTCTCCTACAACAATTTCATCGGCAAGGTCCCTACCGGTGGTCAGTTTTTGGTCTTCAGCGACAAATCCTTTGCAGGGAACCCGAATCTCTGTAGTTCCCACTCTTGCCCTAATTCCTCGTTGAAGAAGAGACGCGGCCCTTGGAGTTTGAAATCGACGAGGGTGATCGTCATGGTGATTGCACTGGCCACTGCGGCGATTCTCGTGGCGGGGACGGAGTACATGAGGAGGAGGAGGAAGCTGAAGCTTGCGATGACGTGGAAGCTGACGGGGTTCCAGCGGCTGAACTTGAAAGCCGAGGAGGTGGTGGAGTGTCTAAAAGAAGAGAACATAATAGGAAAAGGAGGAGCAGGGATCGTGTACCGCGGGTCCATGAGAAACGGAAGCGACGTGGCAATAAAGCGGTTGGTTGGAGCGGGGAGTGGAAGGAACGATTACGGGTTCAAAGCGGAGATAGAGACGGTGGGGAAGATAAGGCACAGGAACATAATGAGGCTTTTGGGTTACGTGTCGAACAAGGAGACGAACTTGCTTCTGTATGAGTACATGCCGAATGGGAGCTTAGGGGAGTGGCTGCATGGTGCCAAGGGAGGTCATTTAAAGTGGGAAATGAGGTACAAGATTGCGGTGGAAGCTGCAAAGGGACTATGCTATTTGCACCATGATTGTTCCCCTCTTATCATTCACAGGGATGTCAAGTCTAATAATATATTGCTCGATGCTCACTTTGAGGCTCATGTTGCTGATTTTGGCCTTGCCAAGTTCTTGTACGACCTTGGCTCCTCTCAGTCCATGTCCTCCATTGCTGGCTCCTACGGCTACATTGCTCCAGAGTATGCTTACACTTTGAAAGTGGACGAGAAAAGTGATGTGTACAGCTTTGGCGTGGTGCTGTTGGAACTGATAATAGGGAGGAAGCCAGTTGGTGAGTTTGGAGACGGGGTGGACATCGTTGGATGGGTCAACAAAACGAGATTGGAGCTCTCTCAGCCGTCGGATGCAGCAGTAGTGTTGGCAGTGGTGGACCCAAGGCTTAGTGGGTATCCATTGATAAGTGTCATTTACATGTTCAACATAGCTATGATGTGTGTTAAAGAAGTGGGGCCCACTAGGCCTACCATGAGGGAAGTAGTTCATATGCTCTCAAATCCTCCTCACTCTACCACTCACACTCACAACCTAATTAATCTCTAG
Predicted protein sequences of Glyma11g12186
>Glyma11g12186.1   sequence type=predicted peptide   gene model=Glyma11g12186   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGDRAKDDALHDWKFSTSLSAHCFFSGVSCDQELRVVAINVSFVPLFGHVPPEIGELDKLENLTISQNNLTGELPKELAALTSLKHLNISHNVFSGYFPGKIILPMTELEVLDVYDNNFTGSLPEEFVKLEKLKYLKLDGNYFSGSIPESYSEFKSLEFLSLSTNSLSGNIPKSLSKLKTLRILKLGYNNAYEGGIPPEFGTMESLKYLDLSSCNLSGEIPPSLANMRNLDTLFLQMNNLTGTIPSELSDMVSLMSLDLSFNGLTGEIPTRFSQLKNLTLMNFFHNNLRGSVPSFVGELPNLETLQLWENNFSSELPQNLGQNGKFKFFDVTKNHFSGLIPRDLCKSGRLQTFLITDNFFHGPIPNEIANCKSLTKIRASNNYLNGAVPSGIFKLPSVTIIELANNRFNGELPPEISGDSLGILTLSNNLFTGKIPPALKNLRALQTLSLDTNEFLGEIPGEVFDLPMLTVVNISGNNLTGPIPTTFTRCVSLAAVDLSRNMLDGEIPKGMKNLTDLSIFNVSINQISGSVPDEIRFMLSLTTLDLSYNNFIGKVPTGGQFLVFSDKSFAGNPNLCSSHSCPNSSLKKRRGPWSLKSTRVIVMVIALATAAILVAGTEYMRRRRKLKLAMTWKLTGFQRLNLKAEEVVECLKEENIIGKGGAGIVYRGSMRNGSDVAIKRLVGAGSGRNDYGFKAEIETVGKIRHRNIMRLLGYVSNKETNLLLYEYMPNGSLGEWLHGAKGGHLKWEMRYKIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDAHFEAHVADFGLAKFLYDLGSSQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIIGRKPVGEFGDGVDIVGWVNKTRLELSQPSDAAVVLAVVDPRLSGYPLISVIYMFNIAMMCVKEVGPTRPTMREVVHMLSNPPHSTTHTHNLINL*






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