SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G17880 | AT | Annotation by Michelle Graham. TAIR10: basic transcription factor 3 | chr1:6152572-6153425 REVERSE LENGTH=165 | SoyBase | E_val: 3.00E-88 | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG2240 | KOG | RNA polymerase II general transcription factor BTF3 and related proteins | JGI | ISS | |
| PTHR10351 | Panther | TRANSCRIPTION FACTOR BTF3 | JGI | ISS | |
| PTHR10351:SF23 | Panther | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT BET | JGI | ISS | |
| PF01849 | PFAM | NAC domain | JGI | ISS | |
| UniRef100_B0BLA0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CM0216.550.nc protein n=1 Tax=Lotus japonicus RepID=B0BLA0_LOTJA | SoyBase | E_val: 2.00E-99 | ISS |
| UniRef100_C6SX83 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SX83_SOYBN | SoyBase | E_val: 1.00E-113 | ISS |
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Glyma11g12170 not represented in the dataset |
Glyma11g12170 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g04383 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g113900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Glyma11g12180 | Wm82.a1.v1.1 | IGC | Correspondences based on a combination of genome sequence coordinate overlap (fjoin) and sequence similarity (ungapped blastn) |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g12170.2 sequence type=transcript gene model=Glyma11g12170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTGCAGGCTCGTTTATATAAAAGGGAGTCCTTATCTTCTCGCATTGTTTTAGGTTTTCTTAGATAGAGTTGTTACCATTTGCTCCCAGTACAGAGCTTAACCGAGCTTCACAAAGATGAATCGGGAAAAGTTGATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGTACCATGAGAAGAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCGGCTATTGAGGAGGTCAATATCTTTAAGGATGACGTAGTTATCCAGTTTCTAAATCCCAAAGTTCAAGCATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCTCCACAAACAAAGAAGTTGCAAGATATACTCCCTAGCATTATCCACCAATTAGGACCAGATAACTTAGAAAACCTGAAGAAGCTAGCCGAGCAATTCCAGAAGCAGGCTCCTGAAGGAGCCGCCGGTTCAACCACAGCTCAAGAGGAGAATGATGATGACGATGTCCCGGAGCTTGTTCCAGGCCAGGATTTTGAGACAGCTGCTGAGGAGACCAAGGCTGCTTCTTAAGAGGAGACCAAGGCTGCTTCCTAGAGTGTTTTGTTATTGTGCCATTGCCATATATATCCCGTGTTTTTAAATTTTTTTCTTCTTGATTTTCCATTTTAAGTATTTAAGGTGTTCAGTTCTCCTGTCATACTTTAAACAGTTCAAATACTTTATTAAATATGCTTTCCTTCATCTAATTAGGTATTCAGTTTTTGACCGC
>Glyma11g12170.1 sequence type=CDS gene model=Glyma11g12170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCGGGAAAAGTTGATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGTACCATGAGAAGAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCGGCTATTGAGGAGGTCAATATCTTTAAGGATGACGTAGTTATCCAGTTTCTAAATCCCAAAGTTCAAGCATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCTCCACAAACAAAGAAGTTGCAAGATATACTCCCTAGCATTATCCACCAATTAGGACCAGATAACTTAGAAAACCTGAAGAAGCTAGCCGAGCAATTCCAGAAGCAGGCTCCTGAAGGAGCCGCCGGTTCAACCACAGCTCAAGAGGAGAATGATGATGACGATGTCCCGGAGCTTGTTCCAGGCCAGGATTTTGAGACAGCTGCTGAGGAGACCAAGGCTGCTTCTTAA >Glyma11g12170.2 sequence type=CDS gene model=Glyma11g12170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCGGGAAAAGTTGATGAAGATGGCCGGTTCGGTTAGAACTGGGGGAAAGGGTACCATGAGAAGAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCGGCTATTGAGGAGGTCAATATCTTTAAGGATGACGTAGTTATCCAGTTTCTAAATCCCAAAGTTCAAGCATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCTCCACAAACAAAGAAGTTGCAAGATATACTCCCTAGCATTATCCACCAATTAGGACCAGATAACTTAGAAAACCTGAAGAAGCTAGCCGAGCAATTCCAGAAGCAGGCTCCTGAAGGAGCCGCCGGTTCAACCACAGCTCAAGAGGAGAATGATGATGACGATGTCCCGGAGCTTGTTCCAGGCCAGGATTTTGAGACAGCTGCTGAGGAGACCAAGGCTGCTTCTTAA
>Glyma11g12170.1 sequence type=predicted peptide gene model=Glyma11g12170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNREKLMKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPSIIHQLGPDNLENLKKLAEQFQKQAPEGAAGSTTAQEENDDDDVPELVPGQDFETAAEETKAAS* >Glyma11g12170.2 sequence type=predicted peptide gene model=Glyma11g12170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNREKLMKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPSIIHQLGPDNLENLKKLAEQFQKQAPEGAAGSTTAQEENDDDDVPELVPGQDFETAAEETKAAS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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