Glyma11g12140 - SoyBase

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Report for Sequence Feature Glyma11g12140

Feature Type:	gene_model
Chromosome:	Gm11
Start:	8671668
stop:	8674086
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g12140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G34570	AT	Annotation by Michelle Graham. TAIR10: Essential protein Yae1, N-terminal \| chr1:12655297-12656444 REVERSE LENGTH=208	SoyBase	E_val: 6.00E-39	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4774	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR18829	Panther	FAMILY NOT NAMED	JGI		ISS
PF09811	PFAM	Essential protein Yae1, N terminal	JGI		ISS
UniRef100_I1LJ97	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJ97_SOYBN	SoyBase	E_val: 2.00E-152	ISS
UniRef100_Q70I34	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CM0216.520.nc protein n=1 Tax=Lotus japonicus RepID=Q70I34_LOTJA	SoyBase	E_val: 6.00E-104	ISS

Expression Patterns of Glyma11g12140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g12140 not represented in the dataset	Glyma11g12140 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g12140

Paralog	Evidence	Comments
Glyma12g04350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g12140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g113600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g12140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g12140

Limit To All Plant Sequences

>Glyma11g12140.5   sequence type=transcript   gene model=Glyma11g12140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATGGAAGGAAGGAGAAGGAGGCGTTAATGGTGTCTGGTGTTGCGGCCAGCAAGGGGGGAAAGGAGGCATCAATGGCGTGGGGAGGGGTGCTTTCCTATTCGAATTCGATAACCGAACACCGACGGGTAAAACCTCATCAATCGTTCTTCTTCGACTTTATGGAAGGTAGGCTTGCTGAAGAACTTTATGCTGAAAGTTTGCAACTGTCAAAATTAGAACTGACATCCACCAGTGCTGATGATCAAGAAAACAAGGCGAACGATTGTGATGATGATGATTTGAGTTTGTGGGATGATTCTGATGACAAGTTGGAGAGCTTGTCGGATTTGGACAGGGAGTGGCAGAGGAGGCATGACCAATTTCATACGATCGGGTATCGAGATGGTCTTATAGCGGCGAAGGAGGCTTCTGCACAGGAAGGGTTCAATATCGGTTTTAAACAATCGGTCCTTGATGGTTACAGTTGGGGTGTTGTAAGAGGTGTTACCAGTGCTTTTTCTCATCTTCCACGTCAATTAAAAGCAAGGTTGATTGAAACACAAGAAAAAAGGAATGAATTCCAAGGCCTGTATGAATCCGTGCATTCTTTGTCAACAACAGATGCCCTCAGATTGTTTAGTAAAGAAATCAAAGCACAAGAAGCTTTGGAACAGAGTGAACACTCAGAAGTTAGCCATCACACAGCTGGTTTACAAGAGCAGCCTTCCCATGGCTCTCAATTGAGAAGTTATCGTGGACAACTTGAATCTCTGCTTTGTGATTTTCCTGCCATTGATATTCATTTACCTGAACCAAAATAAATGGTGATCTATAATTGTCAAGTATATTTGGCTTGAGTTACATACGACACTGTTTGTGTTGTTTACTTCACATCAGAACGTCTTGCTTTTTATCTTGAATTAACACAGAAGAAAAAAAAAACATTTGATCACTACAAATGAGTTTACTGCAGTTTATAGT

>Glyma11g12140.6   sequence type=transcript   gene model=Glyma11g12140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGAAGCTATGATGGGTGCAGGAAGAAATTTCCTTTCCTAAACCAATTTACCCCCTTCCTAGTTCCTCTTTACCGGCAGCGTGTGAAAAACTCGTGGCCTTTTCCCCTGTCATCACCATTCGTTCCACTTTTCTTTCTTCCTATTCCATTTTTTTTCCACCAAGTTTGAAGCTTTCCAGTTTTTCAACCACACCGATCTTCTTCTTGTCACTAATTTAGAGTACAAATCGAAACCGTAGCCATAAGCAAAACACAAGACAATACAGATCGAAATTTTCAGACTCCACACTCCCTTTATTCTTCACCTCCAAGGTTCCGGAAAGGAATTGAAATTGGGAACGAAATTCTGAGGATGCTTTGGGGAAAATAGTGAAAAAAAAGGGGGGAAAGGAGGTATATTTATTAATTTAGTTGGGTATATTTAACAATTGCCTTGACCTAATCCAAAAAAAAAAAACCCTCTCTGAAATTCAGCTTTCCTATTCGAATTCGATAACCGAACACCGACGGGTAAAACCTCATCAATCGTTCTTCTTCGACTTTGTTACGTATCTTCTTCCTCTGATCCCTTACCCCTTTATATCATTTCAGGATGGAAGGTAGGCTTGCTGAAGAACTTTATGCTGAAAGTTTGCAACTGTCAAAATTAGAACTGACATCCACCAGTGCTGATGATCAAGAAAACAAGGCGAACGATTGTGATGATGATGATTTGAGTTTGTGGGATGATTCTGATGACAAGTTGGAGAGCTTGTCGGATTTGGACAGGGAGTGGCAGAGGAGGCATGACCAATTTCATACGATCGGGTATCGAGATGGTCTTATAGCGGCGAAGGAGGCTTCTGCACAGGAAGGGTTCAATATCGGTTTTAAACAATCGGTCCTTGATGGTTACAGTTGGGGTGTTGTAAGAGGTGTTACCAGTGCTTTTTCTCATCTTCCACGTCAATTAAAAGCAAGGTTGATTGAAACACAAGAAAAAAGGAATGAATTCCAAGGCCTGTATGAATCCGTGCATTCTTTGTCAACAACAGATGCCCTCAGATTGTTTAGTAAAGAAATCAAAGCACAAGAAGCTTTGGAACAGAGTGAACACTCAGAAGTTAGCCATCACACAGCTGGTTTACAAGAGCAGCCTTCCCATGGCTCTCAATTGAGAAGTTATCGTGGACAACTTGAATCTCTGCTTTGTGATTTTCCTGCCATTGATATTCATTTACCTGAACCAAAATAAATGGTGATCTATAATTGTCAAGTATATTTGGCTTGAGTTACATACGACACTGTTTGTGTTGTTTACTTCACATCAGAACGTCTTGCTTTTTATCTTGAATTAACACAGAAGAAAAAAAAAACATTTGATCACTACAAATGAGTTTACTGCAGTTTATAGTTTTGAGGTGCACATATATGGATAAACTATCAACCACAATCTGAATTACAAAACCTCTGCAAGTTAGTATTATTATAGCATTAACCTCAAAACACTTAATTGGAATTATTCATTGAACCCAATATTTCACTCGCCATAATCTACAAATTAGTTTACTGCAGTTTATAGTTTTGAGGTGCACATATGTATAAACTATCAACCACAATCTGAATTACCAAAACTCAACAAGTTAGCATTATTATAGCATTAACCTCAAAACAGTTCATTGGAATTATT

>Glyma11g12140.7   sequence type=transcript   gene model=Glyma11g12140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCCCCTGTCATCACCATTCGTTCCACTTTTCTTTCTTCCTATTCCATTTTTTTTCCACCAAGTTTGAAGCTTTCCAGTTTTTCAACCACACCGATCTTCTTCTTGTCACTAATTTAGAGTACAAATCGAAACCGTAGCCATAAGCAAAACACAAGACAATACAGATCGAAATTTTCAGACTCCACACTCCCTTTATTCTTCACCTCCAAGGTTCCGGAAAGGAATTGAAATTGGGAACGAAATTCTGAGGATGCTTTGGGGAAAATAGTGAAAAAAAAGGGGGGAAAGGAGGTATATTTATTAATTTAGTTGGGTATATTTAACAATTGCCTTGACCTAATCCAAAAAAAAAAAACCCTCTCTGAAATTCAGCTTTCCTATTCGAATTCGATAACCGAACACCGACGGATGGAAGGTAGGCTTGCTGAAGAACTTTATGCTGAAAGTTTGCAACTGTCAAAATTAGAACTGACATCCACCAGTGCTGATGATCAAGAAAACAAGGCGAACGATTGTGATGATGATGATTTGAGTTTGTGGGATGATTCTGATGACAAGTTGGAGAGCTTGTCGGATTTGGACAGGGAGTGGCAGAGGAGGCATGACCAATTTCATACGATCGGGTATCGAGATGGTCTTATAGCGGCGAAGGAGGCTTCTGCACAGGAAGGGTTCAATATCGGTTTTAAACAATCGGTCCTTGATGGTTACAGTTGGGGTGTTGTAAGAGGTGTTACCAGTGCTTTTTCTCATCTTCCACGTCAATTAAAAGCAAGGTTGATTGAAACACAAGAAAAAAGGAATGAATTCCAAGGCCTGTATGAATCCGTGCATTCTTTGTCAACAACAGATGCCCTCAGATTGTTTAGTAAAGAAATCAAAGCACAAGAAGCTTTGGAACAGAGTGAACACTCAGAAGTTAGCCATCACACAGCTGGTTTACAAGAGCAGCCTTCCCATGGCTCTCAATTGAGAAGTTATCGTGGACAACTTGAATCTCTGCTTTGTGATTTTCCTGCCATTGATATTCATTTACCTGAACCAAAATAAATGGTGATCTATAATTGTCAAGTATATTTGGCTTGAGTTACATACGACACTGTTTGTGTTGTTTACTTCACATCAGAACGTCTTGCTTTTTATCTTGAATTAACACAGAAGAAAAAAAAAACATTTGATCACTACAAATGAGTTTACTGCAGTTTATAGT

Coding sequences of Glyma11g12140

Limit To All Plant Sequences

>Glyma11g12140.4   sequence type=CDS   gene model=Glyma11g12140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTAGATTGTGATGATGATGATTTGAGTTTGTGGGATGATTCTGATGACAAGTTGGAGAGCTTGTCGGATTTGGACAGGGAGTGGCAGAGGAGGCATGACCAATTTCATACGATCGGGTATCGAGATGGTCTTATAGCGGCGAAGGAGGCTTCTGCACAGGAAGGGTTCAATATCGGTTTTAAACAATCGGTCCTTGATGGTTACAGTTGGGGTGTTGTAAGAGGTGTTACCAGTGCTTTTTCTCATCTTCCACGTCAATTAAAAGCAAGGTTGATTGAAACACAAGAAAAAAGGAATGAATTCCAAGGCCTGTATGAATCCGTGCATTCTTTGTCAACAACAGATGCCCTCAGATTGTTTAGTAAAGAAATCAAAGCACAAGAAGCTTTGGAACAGAGTGAACACTCAGAAGTTAGCCATCACACAGCTGGTTTACAAGAGCAGCCTTCCCATGGCTCTCAATTGAGAAGTTATCGTGGACAACTTGAATCTCTGCTTTGTGATTTTCCTGCCATTGATATTCATTTACCTGAACCAAAATAA

>Glyma11g12140.5   sequence type=CDS   gene model=Glyma11g12140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATGGAAGGAAGGAGAAGGAGGCGTTAATGGTGTCTGGTGTTGCGGCCAGCAAGGGGGGAAAGGAGGCATCAATGGCGTGGGGAGGGGTGCTTTCCTATTCGAATTCGATAACCGAACACCGACGGGTAAAACCTCATCAATCGTTCTTCTTCGACTTTATGGAAGGTAGGCTTGCTGAAGAACTTTATGCTGAAAGTTTGCAACTGTCAAAATTAGAACTGACATCCACCAGTGCTGATGATCAAGAAAACAAGGCGAACGATTGTGATGATGATGATTTGAGTTTGTGGGATGATTCTGATGACAAGTTGGAGAGCTTGTCGGATTTGGACAGGGAGTGGCAGAGGAGGCATGACCAATTTCATACGATCGGGTATCGAGATGGTCTTATAGCGGCGAAGGAGGCTTCTGCACAGGAAGGGTTCAATATCGGTTTTAAACAATCGGTCCTTGATGGTTACAGTTGGGGTGTTGTAAGAGGTGTTACCAGTGCTTTTTCTCATCTTCCACGTCAATTAAAAGCAAGGTTGATTGAAACACAAGAAAAAAGGAATGAATTCCAAGGCCTGTATGAATCCGTGCATTCTTTGTCAACAACAGATGCCCTCAGATTGTTTAGTAAAGAAATCAAAGCACAAGAAGCTTTGGAACAGAGTGAACACTCAGAAGTTAGCCATCACACAGCTGGTTTACAAGAGCAGCCTTCCCATGGCTCTCAATTGAGAAGTTATCGTGGACAACTTGAATCTCTGCTTTGTGATTTTCCTGCCATTGATATTCATTTACCTGAACCAAAATAA

>Glyma11g12140.6   sequence type=CDS   gene model=Glyma11g12140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTAGGCTTGCTGAAGAACTTTATGCTGAAAGTTTGCAACTGTCAAAATTAGAACTGACATCCACCAGTGCTGATGATCAAGAAAACAAGGCGAACGATTGTGATGATGATGATTTGAGTTTGTGGGATGATTCTGATGACAAGTTGGAGAGCTTGTCGGATTTGGACAGGGAGTGGCAGAGGAGGCATGACCAATTTCATACGATCGGGTATCGAGATGGTCTTATAGCGGCGAAGGAGGCTTCTGCACAGGAAGGGTTCAATATCGGTTTTAAACAATCGGTCCTTGATGGTTACAGTTGGGGTGTTGTAAGAGGTGTTACCAGTGCTTTTTCTCATCTTCCACGTCAATTAAAAGCAAGGTTGATTGAAACACAAGAAAAAAGGAATGAATTCCAAGGCCTGTATGAATCCGTGCATTCTTTGTCAACAACAGATGCCCTCAGATTGTTTAGTAAAGAAATCAAAGCACAAGAAGCTTTGGAACAGAGTGAACACTCAGAAGTTAGCCATCACACAGCTGGTTTACAAGAGCAGCCTTCCCATGGCTCTCAATTGAGAAGTTATCGTGGACAACTTGAATCTCTGCTTTGTGATTTTCCTGCCATTGATATTCATTTACCTGAACCAAAATAA

>Glyma11g12140.7   sequence type=CDS   gene model=Glyma11g12140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTAGGCTTGCTGAAGAACTTTATGCTGAAAGTTTGCAACTGTCAAAATTAGAACTGACATCCACCAGTGCTGATGATCAAGAAAACAAGGCGAACGATTGTGATGATGATGATTTGAGTTTGTGGGATGATTCTGATGACAAGTTGGAGAGCTTGTCGGATTTGGACAGGGAGTGGCAGAGGAGGCATGACCAATTTCATACGATCGGGTATCGAGATGGTCTTATAGCGGCGAAGGAGGCTTCTGCACAGGAAGGGTTCAATATCGGTTTTAAACAATCGGTCCTTGATGGTTACAGTTGGGGTGTTGTAAGAGGTGTTACCAGTGCTTTTTCTCATCTTCCACGTCAATTAAAAGCAAGGTTGATTGAAACACAAGAAAAAAGGAATGAATTCCAAGGCCTGTATGAATCCGTGCATTCTTTGTCAACAACAGATGCCCTCAGATTGTTTAGTAAAGAAATCAAAGCACAAGAAGCTTTGGAACAGAGTGAACACTCAGAAGTTAGCCATCACACAGCTGGTTTACAAGAGCAGCCTTCCCATGGCTCTCAATTGAGAAGTTATCGTGGACAACTTGAATCTCTGCTTTGTGATTTTCCTGCCATTGATATTCATTTACCTGAACCAAAATAA

Predicted protein sequences of Glyma11g12140

Limit To All Plant Sequences

>Glyma11g12140.4   sequence type=predicted peptide   gene model=Glyma11g12140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLDCDDDDLSLWDDSDDKLESLSDLDREWQRRHDQFHTIGYRDGLIAAKEASAQEGFNIGFKQSVLDGYSWGVVRGVTSAFSHLPRQLKARLIETQEKRNEFQGLYESVHSLSTTDALRLFSKEIKAQEALEQSEHSEVSHHTAGLQEQPSHGSQLRSYRGQLESLLCDFPAIDIHLPEPK*

>Glyma11g12140.5   sequence type=predicted peptide   gene model=Glyma11g12140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYGRKEKEALMVSGVAASKGGKEASMAWGGVLSYSNSITEHRRVKPHQSFFFDFMEGRLAEELYAESLQLSKLELTSTSADDQENKANDCDDDDLSLWDDSDDKLESLSDLDREWQRRHDQFHTIGYRDGLIAAKEASAQEGFNIGFKQSVLDGYSWGVVRGVTSAFSHLPRQLKARLIETQEKRNEFQGLYESVHSLSTTDALRLFSKEIKAQEALEQSEHSEVSHHTAGLQEQPSHGSQLRSYRGQLESLLCDFPAIDIHLPEPK*

>Glyma11g12140.6   sequence type=predicted peptide   gene model=Glyma11g12140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGRLAEELYAESLQLSKLELTSTSADDQENKANDCDDDDLSLWDDSDDKLESLSDLDREWQRRHDQFHTIGYRDGLIAAKEASAQEGFNIGFKQSVLDGYSWGVVRGVTSAFSHLPRQLKARLIETQEKRNEFQGLYESVHSLSTTDALRLFSKEIKAQEALEQSEHSEVSHHTAGLQEQPSHGSQLRSYRGQLESLLCDFPAIDIHLPEPK*

>Glyma11g12140.7   sequence type=predicted peptide   gene model=Glyma11g12140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGRLAEELYAESLQLSKLELTSTSADDQENKANDCDDDDLSLWDDSDDKLESLSDLDREWQRRHDQFHTIGYRDGLIAAKEASAQEGFNIGFKQSVLDGYSWGVVRGVTSAFSHLPRQLKARLIETQEKRNEFQGLYESVHSLSTTDALRLFSKEIKAQEALEQSEHSEVSHHTAGLQEQPSHGSQLRSYRGQLESLLCDFPAIDIHLPEPK*

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