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Report for Sequence Feature Glyma11g12080
Feature Type: gene_model
Chromosome: Gm11
Start: 8622359
stop: 8628173
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g12080
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G62020 AT
Annotation by Michelle Graham. TAIR10: Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216
SoyBase E_val: 0 ISS
GO:0006886 GO-bp
Annotation by Michelle Graham. GO Biological Process: intracellular protein transport
SoyBase N/A ISS
GO:0006888 GO-bp
Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport
SoyBase N/A ISS
GO:0009630 GO-bp
Annotation by Michelle Graham. GO Biological Process: gravitropism
SoyBase N/A ISS
GO:0016192 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport
SoyBase N/A ISS
GO:0030244 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process
SoyBase N/A ISS
GO:0048193 GO-bp
Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0030126 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: COPI vesicle coat
SoyBase N/A ISS
GO:0080008 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex
SoyBase N/A ISS
GO:0005198 GO-mf
Annotation by Michelle Graham. GO Molecular Function: structural molecule activity
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
KOG0292
KOG
Vesicle coat complex COPI, alpha subunit
JGI ISS
PTHR19876 Panther
COATOMER
JGI ISS
PTHR19876:SF1 Panther
COATOMER BETA SUBUNIT
JGI ISS
PF00400 PFAM
WD domain, G-beta repeat
JGI ISS
PF04053 PFAM
Coatomer WD associated region
JGI ISS
PF06957 PFAM
Coatomer (COPI) alpha subunit C-terminus
JGI ISS
UniRef100_I1LJ90 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJ90_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q70I39 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Coatomer alpha subunit-like protein n=2 Tax=Lotus japonicus RepID=Q70I39_LOTJA
SoyBase E_val: 0 ISS
Expression Patterns of Glyma11g12080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma11g12080
Paralog Evidence Comments
Glyma12g04290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g12080 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g113000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g12080
Coding sequences of Glyma11g12080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g12080.1 sequence type=CDS gene model=Glyma11g12080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTGACCAAGTTCGAGACCAAAAGTAATAGAGTGAAGGGACTGAGTTTCCACAGCAAGAGACCCTGGATCCTCGCGAGTCTTCACAGTGGCGTGATCCAACTATGGGATTACCGAATGGGTACTCTCATTGACAGATTCGATGAGCATGATGGTCCTGTCAGAGGTGTCCATTTCCATAATTCCCAGCCCCTGTTTGTCTCTGGAGGGGATGATTACAAGATTAAGGTTTGGAACTATAAGATGCATAGGTGCTTGTTCACTCTTCTAGGACACCTTGATTATATCCGTACCGTGCAATTTCATCATGAGGACCCTTGGATTGTGAGTGCCAGTGATGATCAGACCATTCGCATTTGGAACTGGCAGTCACGTACCTGTATATCTGTTTTAACTGGGCACAATCACTATGTTATGTGTGCTTCATTCCATCCAAAAGAGGATATTGTTGTGTCAGCCTCCCTGGATCAAACTGTTCGTGTTTGGGATATTGGTTCTCTCAAAAGGAAGGCCGGGCCTGCTGCAGATGACATCCTACGATTGAGTCAAATGAACACAGATCTTTTTGGAGGTGTTGATGCAGTTGTTAAGTATGTATTGGAAGGTCATGACCGGGGTGTCAACTGGGCTGCTTTTCATCCTACACTGCCTCTGATTGTCTCAGGAGCTGATGACCGACAAGTGAAACTTTGGAGGATGAATGACACCAAGGCATGGGAAGTGGATACTCTGAGAGGACACATGAATAATGTTTCATGTGTTATGTTCCATGCCAAACAGGACATCATTGTGTCAAATTCTGAGGATAAAAGTATTCGAGTATGGGATGCCACAAAGCGGACTGGAATTCAAACTTTCCGCAGAGAGCATGATCGGTTTTGGATTCTTGCTACACATCCTGAAATGAATTTGTTGGCAGCTGGTCATGACAGTGGCATGATAGTCTTTAAGCTGGAGAGAGAAAGACCCGCTTTTGCAGTTAGTGGTGATTCTTTATTCTACACAAAAGACCGATTCTTGCGTTTCTTCGAATTTTCAACTCAGAGAGAGACTCAAGTACTTACAATTCGACGACCTGGATCTTCAAGTCTGAATCAAAGTCCAAAGACTCTTTCCTACAGCCCTACTGAAAATGCAATTCTACTCTGTTCAGACGTGGATGGCGGATCTTATGAGTTGTATTGCATATCCAAAGATGGTACAAAGGACAGTTTTGGTAGGGGTGATACACAAGATCCAAAGAAAGGTCTTGGAGGATCTGCAGTCTTTGTGGCTCGGAATAGGTTTGCTGTGCTTGACAAAGGCAGCAACCAAGTCTGTGTAAAAAATCTGAAGAATGAGCTTGTCAAAAAGAGTGCCCTCCCTATTGCTGCAGATGCTATATTCTATGCTGGAACAGGCAACTTGCTATGTAGGTCAGAGGATAGGGTTTTTATATTTGATCTACAGCAGAGGATTGTTCTCGGTGATCTTCAGACCCCTTTTATAAAGTATGTAGTCTGGTCTAATGACATGGAAAGTGTTGCTCTTCTCAGTAAACATGCGATTGTCATTGCTAGCAAGAAGCTTGTGCACCAATGCACCCTCCACGAGACTATCCGAGTAAAAAGTGGAGCCTGGGATGACAATGGCATTTTTATTTACACAACATTAAATCATATAAAATACTGTCTCCCCAATGGAGATAGTGGGATAATTAAAACACTGGATGTCCCAATTTATATTACAAAGGTTGTTGGAAACACCATCTTCTGCCTGGGTCGGGATGGGAAAAACAAGGCTATAACTGTTGATGCAACAGAATATATCTTTAAGCTTTCCTTGTTGAAGAAAAAATATGACCATGTAATGAGCATGATAAGGAATTCACAGCTCTGTGGGCAGGCAATGATTGCTTATCTACAACAGAAAGGGTTTCCTGAAGTTGCCCTCCATTTTGTGAAAGATGAGAGAATCCGATTCAATTTGGCTTTGGAGAGTGGCAACATTCAAATTGCAGTTGCATCAGCAACAGCAATTGATGAAAAAGATCACTGGTATCGACTAGGGGTTGAAGCTCTCCGTCAAGGTAACTCTGGTATAGTAGAGTATGCATACCAAAGGACTAAAAATTTTGAGAGACTGTCATTCCTTTATCTCATTACTGGTAATGTGGAGAAACTTTCAAAAATGTTGAAAATTGCTGAAGTGAAGAATGATGTGATGGGCCAGTTTCACAATGCTCTATATATGGGTGACATCAGAGAGCGTGTTAAGATCTTGGAGAATGCAGGACATTTGCCTCTTGCTTACATCACTGCATCAGTCCATGGGCTACATGATGTTGCTGAAAGGCTTGCAGCTGAATTGGGGGATAATGCTCCATCTGTGCCTGAGGGAAAAGTACAATCTCTCTTGATGCCACCACTACCTGTATTGTGTGGTGGTGATTGGCCCCTTCTTAGGGTCATGCGAGGAATATTTGAAGGTGATTTTAACAATACAGATCGAGATGCTGATGATGAAGAGTATGAGGCTGCTGATGGTGATTGGGTCGAGGAGCTTGACATGGTTGATGTAGATGGGTTAGAAAATGGAGATGTTGCTGCAATTTTGGATGGTGTAGAAGTGGCAGAAGATGATGACGAAGAAGGTGGATGGGAGCTGGAAGATTTAGAGCTGCCCCCTGAAGCTGACACACCAAAAGTTTCTGTCAGTTCACGATCTTCAGTTTTTGTGGCCCCAACACCTGGGATGGCAGTTAGCCAGATATGGATTCAGAGATCATCTCTTGCAGCTGATCATGTAGCTGCTGGCAATTTTGATACTGCAATAAGATTACTGAACAGGCAACTCGGGATACGGAACTTTGCCCCCTTGAAATCCATGTTCCTAGATCTACATACTGGCAGTCATTCCTATCTGCGTGCCTTTTCATCCGCTCCAGTTGTATCAATTGCTGTTGAAAGAGGTTGGACTGAGTCATCTAGTCCAAATGTGAGAGGCCCACCAGCACTTCCTTTCAGATTGTCTCAATTAGATGAAAAACTCAAAGCTGGTTACAAGTCAACAACTGCTGGGAAATTTACTGATGCTCTTCGCACTTTTGTCAATATTCTTCATACCATTCCTTTGATTGTTGTTGAGTCAAGGAGGGAGGTCGATGAAGTGAAAGAATTGATTATCATAGTGAAAGAGTATGTCTTGGGTCTGCAGATGGAGCTCAAAAGAAGGGAAATTAAGGACAATCCAGCACGCCAGCAAGAGCTTGCAGCTTATTTCACCCACTGCAATCTTCAAACACCTCACTTGAGGCTAGCTTTGCTGAATGCCATGACTGTCTGCTACAAGGCAAAGAACCTTTCCACGGCTGCAAACTTTGCCAGGAGGCTACTTGAGACCAATCCTACTGTTGAAAACCAAGCTAAGACAGCAAGGCAAGTGCTTGCAGCTGCAGAAAAGAATATGACGGATGCCTTACAATTGAACTATGATTTCCGAAACCCATTTGTAATTTGTGGAGCAACCTATGTGCCCATTTATCGTGGACAGAAGGATGTCGCTTGCCCCTATTGTACTTCCCGTTTCGTGCCAAGCCAGGCGGGCCAGCTATGTGCTGTGTGTGAGCTTTCGGTGGTAGGGGCGGATGCTTCTGGGTTGCTCTGCTCTCCTTCCCAGATTCGTTGA
Predicted protein sequences of Glyma11g12080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g12080.1 sequence type=predicted peptide gene model=Glyma11g12080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEDPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDIVVSASLDQTVRVWDIGSLKRKAGPAADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILATHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYTKDRFLRFFEFSTQRETQVLTIRRPGSSSLNQSPKTLSYSPTENAILLCSDVDGGSYELYCISKDGTKDSFGRGDTQDPKKGLGGSAVFVARNRFAVLDKGSNQVCVKNLKNELVKKSALPIAADAIFYAGTGNLLCRSEDRVFIFDLQQRIVLGDLQTPFIKYVVWSNDMESVALLSKHAIVIASKKLVHQCTLHETIRVKSGAWDDNGIFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITKVVGNTIFCLGRDGKNKAITVDATEYIFKLSLLKKKYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERIRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNSGIVEYAYQRTKNFERLSFLYLITGNVEKLSKMLKIAEVKNDVMGQFHNALYMGDIRERVKILENAGHLPLAYITASVHGLHDVAERLAAELGDNAPSVPEGKVQSLLMPPLPVLCGGDWPLLRVMRGIFEGDFNNTDRDADDEEYEAADGDWVEELDMVDVDGLENGDVAAILDGVEVAEDDDEEGGWELEDLELPPEADTPKVSVSSRSSVFVAPTPGMAVSQIWIQRSSLAADHVAAGNFDTAIRLLNRQLGIRNFAPLKSMFLDLHTGSHSYLRAFSSAPVVSIAVERGWTESSSPNVRGPPALPFRLSQLDEKLKAGYKSTTAGKFTDALRTFVNILHTIPLIVVESRREVDEVKELIIIVKEYVLGLQMELKRREIKDNPARQQELAAYFTHCNLQTPHLRLALLNAMTVCYKAKNLSTAANFARRLLETNPTVENQAKTARQVLAAAEKNMTDALQLNYDFRNPFVICGATYVPIYRGQKDVACPYCTSRFVPSQAGQLCAVCELSVVGADASGLLCSPSQIR*