Glyma11g11970 - SoyBase

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Report for Sequence Feature Glyma11g11970

Feature Type:	gene_model
Chromosome:	Gm11
Start:	8538974
stop:	8544837
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g11970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21340	AT	Annotation by Michelle Graham. TAIR10: MATE efflux family protein \| chr2:9132629-9136236 FORWARD LENGTH=559	SoyBase	E_val: 0	ISS
GO:0006855	GO-bp	Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015238	GO-mf	Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015297	GO-mf	Annotation by Michelle Graham. GO Molecular Function: antiporter activity	SoyBase	N/A	ISS
KOG1347	KOG	Uncharacterized membrane protein, predicted efflux pump	JGI		ISS
PTHR11206	Panther	MULTIDRUG RESISTANCE PUMP	JGI		ISS
PTHR11206:SF3	Panther	ETHIONINE RESISTANCE GENE PRODUCT-RELATED	JGI		ISS
PF01554	PFAM	MatE	JGI		ISS
UniRef100_D6BM32	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EDS5 n=3 Tax=Glycine max RepID=D6BM32_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_D6BM32	UniRef	Annotation by Michelle Graham. Best UniRef hit: EDS5 n=3 Tax=Glycine max RepID=D6BM32_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g11970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g11970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g112100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g11970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g11970

Limit To All Plant Sequences

>Glyma11g11970.1   sequence type=CDS   gene model=Glyma11g11970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCAAACTGAAATCACTACCTCTCCTTTGCTCTCTTCACTCCCCTTCCCGCCAAAACCCTAATTCAACACTCTCAAACCATCACTTTTCTCGTCGCTTCTTCGCACCTTCCATTCCTCCCACCCTGTGCCTATCCGGCGCAGCCTCAGCGTCCACCTTTCATCGCCATCGCTTCTTCGTAACCGCTCGAAGCCAAGACGAAGACCAGATCACTGAGGCTCTTGAACAAGAAGAAGAGAAAGACAACGAAGAAATATCGAGGCAGGGTGAGAAAAAGGAACTCGCGAAGCAAGGCATATGGGATCAGATAAAGGAAATTGTGATGTTCACAGGACCAGCAACTGGACTTTGGATATGTGGACCACTTATGAGTCTCATCGATACTGCAGTTATTGGTCAGAGAAGTTCAATTGAGCTTGCTGCTTTAGGTCCTGCTACAGTTGTTTGTGATTACATGTGCTACGTGTTCATGTTTCTATCAATTGCTACTTCCAATATGGTTGCTACTGCCCTTGCCAAACAGGACAAAGAAGAAGTACAACATCACATATCTGTATTGCTTTTTGTTGGGTTATCTTGTGGCATTGCGATGCTTTTGTTCACAAGGCTATTTGGTGCTGCTATAATAACTGCTTTCACTGGACCAAAGAATGTACACGTAGTACCTGCAGCTAGCAATTATGTAAAGATTCGAGGCTTGGCATCACCTGCTTTACTTGTTGGATGGGTAGCTCAGAGTGCAAGTCTTGGTATGAAAGATTCCTTGGGACCCTTGAAAGCTTTAGCTGCTGCTACAGTTATAAATGTCGCTGGTTGTGTACTTTTGTGCACCTATTTAGGTTATGGAATTGTAGGGGCTGCGTGGGCTACAATGGTTTCACAAGTTGTTGCTTCTTACATGATGATTCAAAATCTAAATATGAAGGGATATAATGCACTTGCCTTCTCCATTCCTTCAGGGAAGGAACTTCTGACGATATTTGGGCTTGCTGCTCCTGTTTTTATAACATTGATGTCAAAGGTGGCTTTTTACGCACTACTTATATATTTTGCTACATCAATGGGTACACATACAATGGCTGCTCATCAAGTCATGGTCCAAACCTATTTAATGTGTACCGTATGGGGTGAACCTCTCTCCCAAACCTCTCAATCATTTATGCCTGAATTGATATATGGAGTAAATCGGAGTTTGTCAAAGGCCCGAATGCTTCTAAGGTCTCTCGTGATAATTGGAGCTATACTTGGATTGTTGTTAGGGATTATTGGAACATCGGTTCCTTGGTTATTTCCCAATATTTTTACACCTGATCGGATGGTCATCCAGGAGATGCATAAGGTGCTGATTCCATACTTTATAGCCCTGGCTGTAACACCCCCTACTGTCAGCCTTGAGGGAACGTTGCTGGCTGGACGGGATCTGAAATTTATAAGTTTGTCAATGAGTGGATGCTTTTGTGTGGGTTCACTAGTATTATGGGCTTTGAGTAGTAGATACGGTTTGCTTGGCTGCTGGTTTTCCCTCGCATTATTTCAATGGGCTCGGTTTTCAATGGCCCTCCAGCGCCTTCTTTCTCCCAAAGGCATCTTATACTCGGAAGATACAGAACAGTATAAGCTGCTAAAGCTAAGGACTGCCTAG

Predicted protein sequences of Glyma11g11970

Limit To All Plant Sequences

>Glyma11g11970.1   sequence type=predicted peptide   gene model=Glyma11g11970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFKLKSLPLLCSLHSPSRQNPNSTLSNHHFSRRFFAPSIPPTLCLSGAASASTFHRHRFFVTARSQDEDQITEALEQEEEKDNEEISRQGEKKELAKQGIWDQIKEIVMFTGPATGLWICGPLMSLIDTAVIGQRSSIELAALGPATVVCDYMCYVFMFLSIATSNMVATALAKQDKEEVQHHISVLLFVGLSCGIAMLLFTRLFGAAIITAFTGPKNVHVVPAASNYVKIRGLASPALLVGWVAQSASLGMKDSLGPLKALAAATVINVAGCVLLCTYLGYGIVGAAWATMVSQVVASYMMIQNLNMKGYNALAFSIPSGKELLTIFGLAAPVFITLMSKVAFYALLIYFATSMGTHTMAAHQVMVQTYLMCTVWGEPLSQTSQSFMPELIYGVNRSLSKARMLLRSLVIIGAILGLLLGIIGTSVPWLFPNIFTPDRMVIQEMHKVLIPYFIALAVTPPTVSLEGTLLAGRDLKFISLSMSGCFCVGSLVLWALSSRYGLLGCWFSLALFQWARFSMALQRLLSPKGILYSEDTEQYKLLKLRTA*

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