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Report for Sequence Feature Glyma11g11791

Feature Type:gene_model
Chromosome:Gm11
Start:8403616
stop:8407721
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g11791
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38900AT Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein | chr4:18139564-18141520 REVERSE LENGTH=547 SoyBaseE_val: 9.00E-173ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009410GO-bp Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR13301Panther X-BOX TRANSCRIPTION FACTOR-RELATED JGI ISS
PF00170PFAM bZIP transcription factor JGI ISS
UniRef100_I1LPW5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LPW5_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q0GPE9UniRef Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP28 n=1 Tax=Glycine max RepID=Q0GPE9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g11791
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g11791 not represented in the dataset
Glyma11g11791 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g11791
ParalogEvidenceComments
Glyma12g04050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g11791 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g110400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g11791
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g11791
>Glyma11g11791.1   sequence type=CDS   gene model=Glyma11g11791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAAAATGAAGAAGCTACGACGACTGACATGTTGCAGAGGCTTCACTTTCTGAAGCAGCCGTTAAACATGGAGCAACTTAGCATCCCGCAATTCAACCCCTCGCAAATGCGCGCGAGGCATCATCATCAGAATCAGAACCAGTTCGACGGTGGGAACAGTAACAAGCGCGCCGGTATACCACCCTCGCACCCACACCAGATCCCACCCATTTCGCCGTACTCTCAGATCCCATTGTCGCGTCAGCACAGCAACATCAACAGCAACAGCAACATTTCCCCTACACCCACCCACACCCGATCACTCTCGCAGCCCTCGTTTTTCTCCCTCGACTCCCTCCCTCCACTTAGCCCCTCTCCCTTCCGTGACTCCTCCTCGACTTCCGTGTCCGAAGCTGCTGACGTGTCCATGGAAGATCGCGACGTGAGTTCTCATTCCCTGTTGCCACCCTCACCTTTCTCCAGAACACTCAACACCAACAACAGTAATTTACCATTACCTCCTCGGAAAGCGCATAGACGCTCTAACAGTGATATTCCGTTTGGGTTTTCCACCGTTTTGCAATCTTCTCCGCCGCTTATCCCTCTTCGGAACCCCGTTTCAGCGAAACCTGCTCAGTTGGTGAAACGGGAAACACCGTGGGACAGGGTTGTTGAGCATAATACTAATACTAATAATAATAATAATGTAGAGGGATCCGGGGAGAAGAAATCTCCTGAAGGGGAAGTGGTGGATGATCTTTTCTCTGCTTACATGAATTTGGATAGCTTTGATGCTTTGAACTCTTCTGGAACCGATGATAAAAATGGAGGCGAAAATCGCGATGATTTGGATAGTAGAGCCAGTGGAACTAAGACCAATGGTGGAGACAGTAGTGATAATGAAGCTGAGAGTAGTGTTAATGAGAGTGGGCATGGAGGGAGTGAGAAGAGGGAAGGGATGAAAAGGAGTGCTGGGGGTGAGATTGCACCAACTACAAGGCACTATAGGAGTGTCTCCATGGATAGTTTCATTGGGAAGTTGAATTTCGGTGACGAGTCGCCGAAGCTGCCTCCTTCGCCGGGGCAGAGAGGTGGTTTGATGTCGCCTGCGGGTGGAATTGATGGGAATTCGGCGGCCTTCAGCTTGGAGTTTGGAAATGGGGAGTTTAGTGGGCCTGAATTGAAGAAAATTATGGCCAATGAAAAGCTTGCGGAGATTGCCTTGACCGATCCAAAGCGTGCGAAAAGGATTTTGGCCAACCGGCAATCGGCTGCGCGATCCAAAGAGCGAAAGATGCGGTACATTTCGGAGCTAGAACACAAGGTTCAGACTCTACAGACAGAAGCCACCACACTATCTGCACAGCTTACTCTGTTACAGAGAGATTCTGCTGGACTCACTAACCAGAATAGCGAGTTGAAGTTTCGCCTTCAATCTATGGAACAGCAAGCAAAGCTCCGAGATGCTCTAAATGAGGCTCTTACTGCTGAAGTTCAAAGATTAAAGATTGCTACAGCTGAACTAAGTAGCGATTCGCATGGTTCTAGCTGTTTGATTCCTCAACATTCTGTCAACCCTCTGATGTTCCAGCAGCAGCCTCCTTCTGCATCCCAACAAAACATTCATCTTCAACAGCAGCAGCACCGCCAGAATGGTAATGCCAACTCAAATTCTGACTTAAAACAATAG
Predicted protein sequences of Glyma11g11791
>Glyma11g11791.1   sequence type=predicted peptide   gene model=Glyma11g11791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGENEEATTTDMLQRLHFLKQPLNMEQLSIPQFNPSQMRARHHHQNQNQFDGGNSNKRAGIPPSHPHQIPPISPYSQIPLSRQHSNINSNSNISPTPTHTRSLSQPSFFSLDSLPPLSPSPFRDSSSTSVSEAADVSMEDRDVSSHSLLPPSPFSRTLNTNNSNLPLPPRKAHRRSNSDIPFGFSTVLQSSPPLIPLRNPVSAKPAQLVKRETPWDRVVEHNTNTNNNNNVEGSGEKKSPEGEVVDDLFSAYMNLDSFDALNSSGTDDKNGGENRDDLDSRASGTKTNGGDSSDNEAESSVNESGHGGSEKREGMKRSAGGEIAPTTRHYRSVSMDSFIGKLNFGDESPKLPPSPGQRGGLMSPAGGIDGNSAAFSLEFGNGEFSGPELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQNSELKFRLQSMEQQAKLRDALNEALTAEVQRLKIATAELSSDSHGSSCLIPQHSVNPLMFQQQPPSASQQNIHLQQQQHRQNGNANSNSDLKQ*






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