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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G16530 | AT | Annotation by Michelle Graham. TAIR10: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | chr2:7163276-7165064 REVERSE LENGTH=343 | SoyBase | E_val: 5.00E-131 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003865 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016627 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors | SoyBase | N/A | ISS |
| KOG1640 | KOG | Predicted steroid reductase | JGI | ISS | |
| PTHR14624 | Panther | DFG10 PROTEIN | JGI | ISS | |
| PF02544 | PFAM | 3-oxo-5-alpha-steroid 4-dehydrogenase | JGI | ISS | |
| UniRef100_G7JJX5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 3-oxo-5-alpha-steroid 4-dehydrogenase n=1 Tax=Medicago truncatula RepID=G7JJX5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LJ54 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1LJ54_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g11780 not represented in the dataset |
Glyma11g11780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g110300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g11780.2 sequence type=transcript gene model=Glyma11g11780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATGTTGATTGGTTTCATGTGCTAAAAAATGAAAATTTTAGGAGAGTCGTGTCAAGCATTGGGAGCCTTGGGCGATGAGTTTTCAGTCACCGTTCTGATGGGTTGGGGTTGGTGAGTTGCGTCAATGTTTATCCAAATGAACACAAATAAGAAACGACCCAAGCTTCAATCTGTGTCCTTTCATTGCCTTTGCTTTCCACATACATATAGCAATTGTTAAATTATCAATCATCGTCACTCTTTTTTAACAACGGGAATGAAGATCAGATGAAATGAAAGATTTAACATTGTAGCCAGATCCCTAACCCCTCCCTTTACGCACCCAAACGTTTTTGTTAATTCCCCCCAACCCAACGACACGCTTCGTATCTCTCTCTCTCTCTTTCCCGCACTTCAATAAATCCACCACCCAGAAACCATGGTTTTTCTTTTTCATAATCAACCGATGGAGGTGGTTCTCGTTCAAATGCTGAGGCTGGCATGGGTCGCTGCCACGTTACCCATCATCGTCGCTTCTATTCCCACTCCCAAGCTCAACTGCCTCCGTGGCACCTTGCTGGGTTTTGCTCGTAGAGGCAAAATCATGCACTCTTCCTCCCAAGTAACACCACTTTTGCATTCATAAAGTAACTATTTCTCAGAGGTTCTTCTTGCACTTCTACGTTGTGGCTTTTATATGGACAACGTTGCTACTTGTTGGGACTTGGGCATATGCGTACAGCATGGTGCCACTTGTTGTGGAGCCGTTTTCTTACTCTACTATCACTAGCTTCTTGACTGGTGGTTCTACTATTAGAACTGATACGCATAAATTGAGGCAGGGATATGTGGCCTGGCAAGCGGTTTTTCTGCTTTTGATGATGGAAGTTCATGTCCTCAGACGCCTTTATGAGACGATACATGTTTTTAACTATAGCCCTTCTGCTCGCATGCATGCCGTTGGTTATCTCACTGGATTGTTTTTCTACGTAGGAGCACCACTATCGCTGTGTGGTGGTTGTGCAGTAGAGGTGTTTAACTTCCTAGCAAATCTAGTGACTGAGTTCATTGTCAAGGGCAAGAATCAGATGCAAGTAACAGAGTTAGAATTCTGGCAAGTTGTGAATCCTCTCTTCAAGCTTGGGTGGAAGCATTGGATTGGTGCTGCTGTTTTCTTATGGGGTTGGATTCATCAACACCAGTGCCATAAGATTCTTGGTTCTCTACGACATTCAAGACAAGCAGATGAATATGTAATTCCTCATGGTGATTGGTTTGAAATTGTCTCCTCTCCACATTATCTGTCTGAAATCGTTATATACGCTAGTTTTGTGGTCGCTACTGGAGGATCCAACCTAACAATCTGGCTGCTTTTTGTTTTTGTGGTGGCAAATCTGTCATTTGCAGCTGTGGAAACACATGGCTGGTATCGTCAGAAATTTGAAGATTATCCAAGTAGTCGCTTTGCTATAATTCCATTTATTCTGTGAGATTGTGAAGCAATGTGTAATTATCACAATTGATCACGGCAAAGAACTTCATTATTTCCCAAGGTGTACTTGTTTAGATTAAGCTATTTTAGTTTAGAGAATCTTATACTTCAAATACCTAAACCTAAATAATATTTGGCTTTGTTTTTGGTGTAAAAATCCAAACATTCAGAGTCAGTCGTGTATTATTTACCCACCAAAATAATACCTAAAATAGTTATGATTGCATTCATTATGGAAATTACTGTCGTGTATTATTTACCCACCAAAATAATACCTAAAATAGTTATGATTGCATTCATTATGGAAATTCCTGAAGTTTTCTACTATTTAAAATACTCATTCATTTCTCTGACTTTGTG
>Glyma11g11780.1 sequence type=CDS gene model=Glyma11g11780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTTTCTTTTTCATAATCAACCGATGGAGGTGGTTCTCGTTCAAATGCTGAGGCTGGCATGGGTCGCTGCCACGTTACCCATCATCGTCGCTTCTATTCCCACTCCCAAGCTCAACTGCCTCCGTGGCACCTTGCTGGGTTTTGCTCGTAGAGGCAAAATCATGCACTCTTCCTCCCAAAAAGTAACTATTTCTCAGAGGTTCTTCTTGCACTTCTACGTTGTGGCTTTTATATGGACAACGTTGCTACTTGTTGGGACTTGGGCATATGCGTACAGCATGGTGCCACTTGTTGTGGAGCCGTTTTCTTACTCTACTATCACTAGCTTCTTGACTGGTGGTTCTACTATTAGAACTGATACGCATAAATTGAGGCAGGGATATGTGGCCTGGCAAGCGGTTTTTCTGCTTTTGATGATGGAAGTTCATGTCCTCAGACGCCTTTATGAGACGATACATGTTTTTAACTATAGCCCTTCTGCTCGCATGCATGCCGTTGGTTATCTCACTGGATTGTTTTTCTACGTAGGAGCACCACTATCGCTGTGTGGTGGTTGTGCAGTAGAGGTGTTTAACTTCCTAGCAAATCTAGTGACTGAGTTCATTGTCAAGGGCAAGAATCAGATGCAAGTAACAGAGTTAGAATTCTGGCAAGTTGTGAATCCTCTCTTCAAGCTTGGGTGGAAGCATTGGATTGGTGCTGCTGTTTTCTTATGGGGTTGGATTCATCAACACCAGTGCCATAAGATTCTTGGTTCTCTACGACATTCAAGACAAGCAGATGAATATGTAATTCCTCATGGTGATTGGTTTGAAATTGTCTCCTCTCCACATTATCTGTCTGAAATCGTTATATACGCTAGTTTTGTGGTCGCTACTGGAGGATCCAACCTAACAATCTGGCTGCTTTTTGTTTTTGTGGTGGCAAATCTGTCATTTGCAGCTGTGGAAACACATGGCTGGTATCGTCAGAAATTTGAAGATTATCCAAGTAGTCGCTTTGCTATAATTCCATTTATTCTGTGA >Glyma11g11780.2 sequence type=CDS gene model=Glyma11g11780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGCCACTTGTTGTGGAGCCGTTTTCTTACTCTACTATCACTAGCTTCTTGACTGGTGGTTCTACTATTAGAACTGATACGCATAAATTGAGGCAGGGATATGTGGCCTGGCAAGCGGTTTTTCTGCTTTTGATGATGGAAGTTCATGTCCTCAGACGCCTTTATGAGACGATACATGTTTTTAACTATAGCCCTTCTGCTCGCATGCATGCCGTTGGTTATCTCACTGGATTGTTTTTCTACGTAGGAGCACCACTATCGCTGTGTGGTGGTTGTGCAGTAGAGGTGTTTAACTTCCTAGCAAATCTAGTGACTGAGTTCATTGTCAAGGGCAAGAATCAGATGCAAGTAACAGAGTTAGAATTCTGGCAAGTTGTGAATCCTCTCTTCAAGCTTGGGTGGAAGCATTGGATTGGTGCTGCTGTTTTCTTATGGGGTTGGATTCATCAACACCAGTGCCATAAGATTCTTGGTTCTCTACGACATTCAAGACAAGCAGATGAATATGTAATTCCTCATGGTGATTGGTTTGAAATTGTCTCCTCTCCACATTATCTGTCTGAAATCGTTATATACGCTAGTTTTGTGGTCGCTACTGGAGGATCCAACCTAACAATCTGGCTGCTTTTTGTTTTTGTGGTGGCAAATCTGTCATTTGCAGCTGTGGAAACACATGGCTGGTATCGTCAGAAATTTGAAGATTATCCAAGTAGTCGCTTTGCTATAATTCCATTTATTCTGTGA
>Glyma11g11780.1 sequence type=predicted peptide gene model=Glyma11g11780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVFLFHNQPMEVVLVQMLRLAWVAATLPIIVASIPTPKLNCLRGTLLGFARRGKIMHSSSQKVTISQRFFLHFYVVAFIWTTLLLVGTWAYAYSMVPLVVEPFSYSTITSFLTGGSTIRTDTHKLRQGYVAWQAVFLLLMMEVHVLRRLYETIHVFNYSPSARMHAVGYLTGLFFYVGAPLSLCGGCAVEVFNFLANLVTEFIVKGKNQMQVTELEFWQVVNPLFKLGWKHWIGAAVFLWGWIHQHQCHKILGSLRHSRQADEYVIPHGDWFEIVSSPHYLSEIVIYASFVVATGGSNLTIWLLFVFVVANLSFAAVETHGWYRQKFEDYPSSRFAIIPFIL* >Glyma11g11780.2 sequence type=predicted peptide gene model=Glyma11g11780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVPLVVEPFSYSTITSFLTGGSTIRTDTHKLRQGYVAWQAVFLLLMMEVHVLRRLYETIHVFNYSPSARMHAVGYLTGLFFYVGAPLSLCGGCAVEVFNFLANLVTEFIVKGKNQMQVTELEFWQVVNPLFKLGWKHWIGAAVFLWGWIHQHQCHKILGSLRHSRQADEYVIPHGDWFEIVSSPHYLSEIVIYASFVVATGGSNLTIWLLFVFVVANLSFAAVETHGWYRQKFEDYPSSRFAIIPFIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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