Glyma11g11540 - SoyBase

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Report for Sequence Feature Glyma11g11540

Feature Type:	gene_model
Chromosome:	Gm11
Start:	8234805
stop:	8236729
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g11540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G16770	AT	Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein \| chr2:7279859-7280817 FORWARD LENGTH=249	SoyBase	E_val: 4.00E-109	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010043	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to zinc ion	SoyBase	N/A	ISS
GO:0071294	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to zinc ion	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PF07716	PFAM	Basic region leucine zipper	JGI		ISS
UniRef100_I1LJ22	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJ22_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0GPE4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP121 n=1 Tax=Glycine max RepID=Q0GPE4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g11540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g11540

Paralog	Evidence	Comments
Glyma12g03690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g11540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g108100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g11540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g11540

Limit To All Plant Sequences

>Glyma11g11540.4   sequence type=CDS   gene model=Glyma11g11540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGACGGCGAGCTGGATTTCTCGAACCATGAAGTGTTTTCGAGTCCGAACATGGGGGAGCTTCCGAGCAGCGGTTCAATGGACAGTTTCTTCGACGAGCTTCTCAAGGACACGCACGCGTGCACCCACACCCACACGTGCAACCCTCCCGGCCCCGATTTCTCCCACACTCACACGTGCTACCACGTACACACCAAAATCGTCCCCGCCCCTGAGGAGGACCAGGTCGCTACTGATGACACCGCCGAGTCCGCCGAGAAAAAGTCGTCGTCGAAGAAGCGGCCTCTGGGGAACAAAGAAGCCGTCCGGAAGTACCGGGAGAAGAAGAAGGCGCGTGCGGCGTCGCTGGAGGATGAGGTTGTGAAGTTGAGGGCTCTGAACCAGCACTTGATGAAGAAGCTGCAGGGGCAGGCGGCTCTCGAGGCCGAAATAGCCAGGCTCAAGTGTTTGTTGGTTGACATAAGGGGGAGGATTGAAGGGGAAATTGGGTCCTTTCCCTATCAGAAAACAACAACAACAACGCCGAATCCGGTGGCTGGTTCTTATGTGATGAACCCTTGTAACTTGCCGTGTGATGATAGGGTGTATTGCCTTCACCCTGATGGGAGGATTGGGGAGACTGCGGCTTTGAATGGGGAAGAGTTTGATGGTTGTGAATTTGAGAACCTGCAGTGTCTGGCAAGCCAGAATTTGGGGCTCAAGGATCTTCGCGCTTGTGGGGTTGGGGTTGGACACACAGGGTCTAATGTAAATTCTTCTGCCTTATCAAAGAAAAGAAAAGGGGGATCTCGTGCTGCAACAGCTGGTTGA

Predicted protein sequences of Glyma11g11540

Limit To All Plant Sequences

>Glyma11g11540.4   sequence type=predicted peptide   gene model=Glyma11g11540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDGELDFSNHEVFSSPNMGELPSSGSMDSFFDELLKDTHACTHTHTCNPPGPDFSHTHTCYHVHTKIVPAPEEDQVATDDTAESAEKKSSSKKRPLGNKEAVRKYREKKKARAASLEDEVVKLRALNQHLMKKLQGQAALEAEIARLKCLLVDIRGRIEGEIGSFPYQKTTTTTPNPVAGSYVMNPCNLPCDDRVYCLHPDGRIGETAALNGEEFDGCEFENLQCLASQNLGLKDLRACGVGVGHTGSNVNSSALSKKRKGGSRAATAG*

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