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Report for Sequence Feature Glyma11g11470

Feature Type:gene_model
Chromosome:Gm11
Start:8171373
stop:8178047
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g11470
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G20990AT Annotation by Michelle Graham. TAIR10: synaptotagmin A | chr2:9014827-9017829 FORWARD LENGTH=541 SoyBaseE_val: 0ISS
GO:0001778GO-bp Annotation by Michelle Graham. GO Biological Process: plasma membrane repair SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006897GO-bp Annotation by Michelle Graham. GO Biological Process: endocytosis SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009615GO-bp Annotation by Michelle Graham. GO Biological Process: response to virus SoyBaseN/AISS
GO:0032456GO-bp Annotation by Michelle Graham. GO Biological Process: endocytic recycling SoyBaseN/AISS
GO:0046740GO-bp Annotation by Michelle Graham. GO Biological Process: spread of virus in host, cell to cell SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009898GO-cc Annotation by Michelle Graham. GO Cellular Compartment: internal side of plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR10774Panther CALCIUM-DEPENDENT LIPID-BINDING PROTEIN (CALB RELATED) JGI ISS
PTHR10774:SF2Panther CALCIUM LIPID BINDING PROTEIN JGI ISS
PF00168PFAM C2 domain JGI ISS
UniRef100_G7JNF4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Synaptotagmin-7 n=1 Tax=Medicago truncatula RepID=G7JNF4_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LJ17UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJ17_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g11470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g11470
ParalogEvidenceComments
Glyma12g03620 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g11470 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g107300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g11470
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g11470
>Glyma11g11470.1   sequence type=CDS   gene model=Glyma11g11470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTCTTTGGTACCATTTTGGGGTTTTTGGGATTTGGGGTTGGGATTTCGATTGGTCTCGTGGCTGGCTACTTTCTCTTCATCTACTTCCAACCCACCAATGTTGAGGATCCTGAAATCAAGCCATTGGCGGAGCAAGAGCAAGAGACTCTGCAACGAATGTTTCCCGAGATTCCTCTTTGGATAAAAAATCCCGATTTTGATCGGCTTGACTGGCTGAACAAGTTTGTAGAATATATGTGGCCGTATCTTGACAAGGCAATATGCAAGACTGCGAAGAACATTGCAAAACCTATAATTGCTGAGCAGATTCCTAAATACAAAATTGATTCCGTTGAGTTTGAAACACTCACACTGGGGTCACTGCCTCCAACATTTCAAGGAATGAAAGTTTATGTGACTGATGAGAAGGAGTTAATTATGGAGCCTTCTGTAAAATGGGCTGCAAATCCTAATGTCACTGTTTCTGTTAAGGCATTTGGGTTGAAAGCAACTGTGCAGGTTGTGGATTTGCAAGTTTTCCTTTTGCCTCGTATTACTTTGAAGCCTTTGGTTCCTAGCTTTCCTTGCTTTGCGAACATATACGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTCATAGGGGCTGATCTTATGTCTATTCCGGGGGTCTATAGGATTGTTCAGGAGCTTATTAAAGATCAGGTTGCAAACATGTATCTATGGCCCAAAACCTTGGAAGTTCAAGTGTTAGATATGTCAAAAGCCTTGAAGAGGCCTGTTGGTATTTTACATGTAAAGGTTCTGCAAGCAATTAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTAAAGCTTACTGAGGATAAATTGCCATCGAAAAAGACTACTGTGAAGCACAAGAACTTAAATCCTGAATGGAATGAAGAATTCAATATGGTTGTTAAAGATCCAGACTCCCAGGTTTTAGAGATTAATGTTTATGACTGGGAGCAGGTTGGGAAGCATGACAAGATGGGTATGAATGTGATCCCTTTAAAAGAAGTTTCCCCTGAAGAGACTAAACGTTTTTCTCTTGACCTCCTAAAAAATATGGATCCTAATGATGTCCAAAATGAGAAGTCACGAGGGCAGATTGTTGTGGAATTGACTTATAAACCCTTCAAGGAGGAGGATTTGGGCAAGGGGTTTGAGGAGACACAGACAGTACCGAAAGCTCCTGAAGGTACTCCAGCTGGTGGAGGTTTGCTTGTAGTTATAGTCCATGAAGCTCAAGACGTTGAAGGAAAGTATCACACTAATCCACATGTACGTCTTATTTTCAGAGGGGAGGAGAAAAAAACTAAGCGCATTAAAAAGAACAGAGATCCAAGATGGGAAGATGAGTTCCAATTTATGGTGGAGGAGCCTCCCACCAATGATAGATTGCATGTGGAGGTTGTCAGTACTTCATCAAGAAACCTGCTCCACCAAAAGGAACCATTGGGTTATATCGACATCAATCTTGGGGATGTTGTTGCCAACAAAAGAATCAATGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCCTCCAGATAGAGTTGCAGTGGAGAACCTTGGAAGCATGA
Predicted protein sequences of Glyma11g11470
>Glyma11g11470.1   sequence type=predicted peptide   gene model=Glyma11g11470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFFGTILGFLGFGVGISIGLVAGYFLFIYFQPTNVEDPEIKPLAEQEQETLQRMFPEIPLWIKNPDFDRLDWLNKFVEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKVYVTDEKELIMEPSVKWAANPNVTVSVKAFGLKATVQVVDLQVFLLPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQELIKDQVANMYLWPKTLEVQVLDMSKALKRPVGILHVKVLQAIKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFNMVVKDPDSQVLEINVYDWEQVGKHDKMGMNVIPLKEVSPEETKRFSLDLLKNMDPNDVQNEKSRGQIVVELTYKPFKEEDLGKGFEETQTVPKAPEGTPAGGGLLVVIVHEAQDVEGKYHTNPHVRLIFRGEEKKTKRIKKNRDPRWEDEFQFMVEEPPTNDRLHVEVVSTSSRNLLHQKEPLGYIDINLGDVVANKRINEKYHLIDSKNGRLQIELQWRTLEA*






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