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Report for Sequence Feature Glyma11g11170
Feature Type: gene_model
Chromosome: Gm11
Start: 7945553
stop: 7951946
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g11170
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G60670 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3755) | chr1:22344099-22347140 FORWARD LENGTH=254
SoyBase E_val: 4.00E-76 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
PTHR14000 Panther
ZUOTIN RELATED FACTOR 2-RELATED
JGI ISS
PF12579 PFAM
Protein of unknown function (DUF3755)
JGI ISS
UniRef100_I1LIX6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LIX6_SOYBN
SoyBase E_val: 0 ISS
UniRef100_O22705 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F8A5.19 protein n=1 Tax=Arabidopsis thaliana RepID=O22705_ARATH
SoyBase E_val: 8.00E-72 ISS
Expression Patterns of Glyma11g11170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma11g11170
Paralog Evidence Comments
Glyma12g03360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g11170 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g104900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g11170
Transcripts of Glyma11g11170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g11170.4 sequence type=transcript gene model=Glyma11g11170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TAAAGAGATAAATTAGCAGAAAAATTAAGCAGAAAGGAGAGGTGGAGTCCACAATGATCAGCATCAAATGCTTATTGGGATTCGCACTGTTGCTGAATTCCAAGATCCACAACCATCCATTATTATCTTTCCTTTAAATTTAAGAAGAATTGTTTCAAAAAATTAAAACCAAGATTTTCCTATTTTCCCTTTCTCTGCATCCCTGTTGGCGGAGCTCTAAGCCATCTCTTGTCTCTCTCGAGAGGGGAAAGAGAGAGAGAGAGAGAGAGTGTTTCGGTGTCACAACGCAAACCCAGAAAGTAGCAAATGCCAAATGGTAGTGCGGTATTAGCATTGTAGCGTAGTGTTAGAGAGAGAAAGAGAAGAAAGAAAAAAGGCACTACCGTCACCACAACCAACTAGGCCTCGGTCGGAAAGTTGCTACAAAAAAGGTTTCGCCTTCTGGGTCACTCTTTACTTTTCTGGGATCTCCATTTCTGAACTAAAGTCTGAATTTTTGAAGGAATTTGATCGTGGGGTTTCTGGTTGCTTATTCTGGGGGTGTCACCAAGTTCCCTTAATCAACTGAATATCGAGCCTTATCTGGGTATTTGGCCTCTGATTCCTGTTGGGTATTTCCTTTTTTTTTTTTAATCTGTGTGGAATCTGAGTGATTTTGATCTTGGAGGGTACCCTGAATCGGTGTTGTTGTTTTGGTTTGAAGATGGTTGTTGATGCTAGTTGTGGCTTAAGGTGATTTAGGGAAGTTGTTAGATAACAGGGGATAATAAGGATGGCAGCACAGTCAAACGCTGGATTTCACAATGAAGATATAGATTCTGTTTTGAACAGGCGTGCAATATCATTTCAACCTGGTGGTGGTGCTATTAACCGCTTGTCCGAGATGGTTCCTATGGGTAATTATTTTGGGCTAAGTAGTTCGTCTGAGATGATGATATATTCTGGGAATTCAAGCATCATTAACAGTAGTAATCCTGTCATGGGTCAAATGAGTCAAGCTGGTAATCTATCCAGTTCCTCGCTTCTTCTCGATTCGGTCCCGGGGCTGAAGCACGACACAGGGTTGGCTGTTGAGTGGTCTGTTGATGAACAGTACAGATTGGAAGAAGGCCTTGCCAAATATGCTGATGAGCCAAGTATCATGAGGTATATCAAAATTGCTGCCCTGTTGCCAGATAAAACTGTTCGTGATGTTGCTTTGAGGTGTAGATGGTTGACAAGAAAGCGAAGAAAATCAGAAGAACACAATCTGGGGAAAAAGGTCAATAATAGAAAGGATAAGCCAGTGGAATTAGCTTCAAAGACGAATTTACATTCAGCTCTGCCCTCAAGCATGGCTACATATCCTCGCATGTCACACCATATGGACCAAAGTCAACAGATACAATATGATGGTATTTGTAGCCCTTTGAAGCAACTCATGGAGCAGAATGCTCAAGCTTTCAATCAAATCACTGCCAATTTGTCTACTTACAAGTTGCAGGATAATATCGACCTCTTCTGCCACACAAGGCACAATATTAATACCATTCTTAATAATATGAGTGAGATGCCTGGCATTATGAGCCAAATGCCGCCACTGCAAGTTACCATTAACGAGGATCTTGCAAGTAGTATTCTGCCTAATAGAACATAGCGGGCAAAGTGCTGACTCCATCAATATTTCCAACACAAATCTAAGTGCATCAGTGTAGAGAGGTTCGCGTTCTTAGCTGCAACTGTTTTGGTGCTAGCTACATGACATTGAGGAGCTAGGGAGTATCTCAGGACTTTCCAGAGTTTCTAATCCATCTTTGATCTTATTGCTCCCTGCTGAAGGAAACCTTGGAACTCCTGTTGTATAAACAAAAAGAAAAAAGAAAAGGGAGAAAATAGGAAAGGGATTAATATAACAATGGTTTGAGCTAAATGCACCTTATTGATTTCAGAGTGCAGGTGTTTTTCTCATGCCATAGGAACTATTGTAGATCTATTTATGCTAGTTTGTCATCAACTTCAAATTTTAAGTAATGCTCATATTTAACCGTTGATAGATGTTGTGTGATGTGTGAAAGTAAATCATTATTTACATAATTTCTTGGGTATAGCATGCTTAGTAATACGTCAATTCTACTCATACGTCTTTTATTTTTAC
Coding sequences of Glyma11g11170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g11170.2 sequence type=CDS gene model=Glyma11g11170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGCACAGTCAAACGCTGGATTTCACAATGAAGATATAGATTCTGTTTTGAACAGGCGTGCAATATCATTTCAACCTGGTGGTGGTGCTATTAACCGCTTGTCCGAGATGGTTCCTATGGGTAATTATTTTGGGCTAAGTAGTTCGTCTGAGATGATGATATATTCTGGGAATTCAAGCATCATTAACAGTAGTAATCCTGTCATGGGTCAAATGAGTCAAGCTGGTAATCTATCCAGTTCCTCGCTTCTTCTCGATTCGGTCCCGGGGCTGAAGCACGACACAGGGTTGGCTGTTGAGTGGTCTGTTGATGAACAGTACAGATTGGAAGAAGGCCTTGCCAAATATGCTGATGAGCCAAGTATCATGAGGTATATCAAAATTGCTGCCCTGTTGCCAGATAAAACTGTTCGTGATGTTGCTTTGAGGTGTAGATGGTTGACAAGAAAGCGAAGAAAATCAGAAGAACACAATCTGGGGAAAAAGGTCAATAATAGAAAGGATAAGCCAGTGGAATTAGCTTCAAAGACGAATTTACATTCAGCTCTGCCCTCAAGCATGGCTACATATCCTCGCATGTCACACCATATGGACCAAAGTCAACAGATACAATATGATGGTATTTGTAGCCCTTTGAAGCAACTCATGGAGCAGAATGCTCAAGCTTTCAATCAAATCACTGCCAATTTGTCTACTTACAAGTTGCAGGATAATATCGACCTCTTCTGCCACACAAGGCACAATATTAATACCATTCTTAATAATATGAGTGAGATGCCTGGCATTATGAGCCAAATGCCGCCACTGCAAGTTACCATTAACGAGGATCTTGCAAGTAGTATTCTGCCTAATAGAACATAG
>Glyma11g11170.4 sequence type=CDS gene model=Glyma11g11170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGCACAGTCAAACGCTGGATTTCACAATGAAGATATAGATTCTGTTTTGAACAGGCGTGCAATATCATTTCAACCTGGTGGTGGTGCTATTAACCGCTTGTCCGAGATGGTTCCTATGGGTAATTATTTTGGGCTAAGTAGTTCGTCTGAGATGATGATATATTCTGGGAATTCAAGCATCATTAACAGTAGTAATCCTGTCATGGGTCAAATGAGTCAAGCTGGTAATCTATCCAGTTCCTCGCTTCTTCTCGATTCGGTCCCGGGGCTGAAGCACGACACAGGGTTGGCTGTTGAGTGGTCTGTTGATGAACAGTACAGATTGGAAGAAGGCCTTGCCAAATATGCTGATGAGCCAAGTATCATGAGGTATATCAAAATTGCTGCCCTGTTGCCAGATAAAACTGTTCGTGATGTTGCTTTGAGGTGTAGATGGTTGACAAGAAAGCGAAGAAAATCAGAAGAACACAATCTGGGGAAAAAGGTCAATAATAGAAAGGATAAGCCAGTGGAATTAGCTTCAAAGACGAATTTACATTCAGCTCTGCCCTCAAGCATGGCTACATATCCTCGCATGTCACACCATATGGACCAAAGTCAACAGATACAATATGATGGTATTTGTAGCCCTTTGAAGCAACTCATGGAGCAGAATGCTCAAGCTTTCAATCAAATCACTGCCAATTTGTCTACTTACAAGTTGCAGGATAATATCGACCTCTTCTGCCACACAAGGCACAATATTAATACCATTCTTAATAATATGAGTGAGATGCCTGGCATTATGAGCCAAATGCCGCCACTGCAAGTTACCATTAACGAGGATCTTGCAAGTAGTATTCTGCCTAATAGAACATAG
Predicted protein sequences of Glyma11g11170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g11170.2 sequence type=predicted peptide gene model=Glyma11g11170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAQSNAGFHNEDIDSVLNRRAISFQPGGGAINRLSEMVPMGNYFGLSSSSEMMIYSGNSSIINSSNPVMGQMSQAGNLSSSSLLLDSVPGLKHDTGLAVEWSVDEQYRLEEGLAKYADEPSIMRYIKIAALLPDKTVRDVALRCRWLTRKRRKSEEHNLGKKVNNRKDKPVELASKTNLHSALPSSMATYPRMSHHMDQSQQIQYDGICSPLKQLMEQNAQAFNQITANLSTYKLQDNIDLFCHTRHNINTILNNMSEMPGIMSQMPPLQVTINEDLASSILPNRT*
>Glyma11g11170.4 sequence type=predicted peptide gene model=Glyma11g11170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAQSNAGFHNEDIDSVLNRRAISFQPGGGAINRLSEMVPMGNYFGLSSSSEMMIYSGNSSIINSSNPVMGQMSQAGNLSSSSLLLDSVPGLKHDTGLAVEWSVDEQYRLEEGLAKYADEPSIMRYIKIAALLPDKTVRDVALRCRWLTRKRRKSEEHNLGKKVNNRKDKPVELASKTNLHSALPSSMATYPRMSHHMDQSQQIQYDGICSPLKQLMEQNAQAFNQITANLSTYKLQDNIDLFCHTRHNINTILNNMSEMPGIMSQMPPLQVTINEDLASSILPNRT*