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Report for Sequence Feature Glyma11g11050

Feature Type:gene_model
Chromosome:Gm11
Start:7868460
stop:7874737
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g11050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48655AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr5:19731575-19732486 REVERSE LENGTH=203 SoyBaseE_val: 5.00E-46ISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG0320 KOG Predicted E3 ubiquitin ligase JGI ISS
PTHR23041Panther RING FINGER PROTEIN 4 JGI ISS
PTHR23041:SF16Panther SUBFAMILY NOT NAMED JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_B9T3C7UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein, putative n=1 Tax=Ricinus communis RepID=B9T3C7_RICCO SoyBaseE_val: 9.00E-60ISS
UniRef100_I1LIV9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LIV9_SOYBN SoyBaseE_val: 5.00E-148ISS

Expression Patterns of Glyma11g11050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g11050 not represented in the dataset
Glyma11g11050 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g11050
ParalogEvidenceComments
Glyma12g03250 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g11050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g103800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g11050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g11050
>Glyma11g11050.1   sequence type=CDS   gene model=Glyma11g11050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTCTCGGGCAGGCAAGGGACCTGCTATCAGAAGTTACCGGCGGAGAAAGACAGCTTTGGACCTTGACCTTAACCGTTTACCGGCTGGTGAGAATCGTGAGCAGGAGGGACCTTCAACTCAGGCGGTGCCTCAAGAAATTCAACTTGAACAGCAGCCACAGGTTACTCAACCTCCGATGATTGACGTGGAAGCCATTGATGATGATGTTGTTGAATGTACCCCAAGGGCTTTTGCTGAGGCTAAAAACAATTCAAGAAGAATTCGTAGGAGGACTGTAGTTGATATTGATCTAGAAGATCAGACTAGGCGCAACAAACGCCGAAGAGAATTGCCAAATCTGATTATTAATTGTGATAAGTATATAAATTTGGAAGGCAGTAGCAGTTCCATGGGGGGAAGTGTTAAAAAGACACCCGAACCTCCAAAGGAGCTTGTCTTCAACTGTCCAATATGTATGGGCCCTATGGTACATGAAATGTCAACAAGATGTGGTCATATTTTTTGCAAGGATTGCATCAAGGCTGCTATAAGTGCTCAGGGTAAATGCCCTACCTGTAGAAAAAAGGTTGTTGCGAAAGATCTTATAAGGGTGTATCTCCCATCAACTAGTTGA
Predicted protein sequences of Glyma11g11050
>Glyma11g11050.1   sequence type=predicted peptide   gene model=Glyma11g11050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSRAGKGPAIRSYRRRKTALDLDLNRLPAGENREQEGPSTQAVPQEIQLEQQPQVTQPPMIDVEAIDDDVVECTPRAFAEAKNNSRRIRRRTVVDIDLEDQTRRNKRRRELPNLIINCDKYINLEGSSSSMGGSVKKTPEPPKELVFNCPICMGPMVHEMSTRCGHIFCKDCIKAAISAQGKCPTCRKKVVAKDLIRVYLPSTS*






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