SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19780 | AT | Annotation by Michelle Graham. TAIR10: LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF179) (TAIR:AT1G33780.1). | chr3:6870238-6874677 FORWARD LENGTH=1058 | SoyBase | E_val: 0 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| PF02622 | PFAM | Uncharacterized ACR, COG1678 | JGI | ISS | |
| UniRef100_B9S4J1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Electron transporter, putative n=1 Tax=Ricinus communis RepID=B9S4J1_RICCO | SoyBase | E_val: 6.00E-166 | ISS |
| UniRef100_UPI000233C277 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C277 related cluster n=1 Tax=unknown RepID=UPI000233C277 | SoyBase | E_val: 0 | ISS |
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Glyma11g10870 not represented in the dataset |
Glyma11g10870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g102200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g10870.2 sequence type=CDS gene model=Glyma11g10870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCTCTCCCTATTGACGGTGTTCATTGTAGCAATAGCATCGTTATCTCTTATTATTGCTGGTTCATCATCATCTCAATTCCAGTGGCAGATCCTCACCAAACACAATTTCTCTTCTCAGATCCGTCTCCATCCTCACCTCCTCCTTCTCGTCACCCTCCCCTGGTCCGGCGAGTCTAGATCCCTCATCAACCAACTTTCACTCGCACTCGCCGCCAAGCCGCCGCCGCAGCAGCAACACTTTGCCTCTCTCAAACTCATGCTCATGCACAGAAATACCGAGAAGCTTCTAGCGGATTCCATAGGTGCTACTGCTACCCCCGATGAAACCACACTCTTTTATTTCCATTATTCTGTTTCTTACAAGTACCGTGGAAGACTCAGAGCTCGCAATATTCTCTCCTCGTTGTATCCTTATATATCCCTTGCGCCCGAGGAGGTTCCTCTCGCGGCGCTCAACACTCCTCTGGATTTCAGATTATTTGTTGACTCCACGGAAAGAGCTCTTGTTCTCGTTGACTTTTGTGGATGGACGCCTAAGTTGCTCGCCAGTGATAATAACGGAACGCAAAATGCTTTCTCCGTGCTTGGGAATCACCATGGAATGGGTTTTAGCAGAGGGAATAATAGAATGCCTGTGTCAAAGGGGAAGACTAACAAGAAGGTGGCTGAGGAGGACACGTGCAAGGCTGAACTCGGTGTTGATAAAGGGTTTTGTGAAGTTCCTTGGCTGGGGGAGTTTACCTCGTTAAATTATGGTCCCTTGGAGGGCTCCAAGGATAGGAATCATCATGTTCTACATTCTTGTTCATCTGAAGAATTTGAGCGGTTTCATTCTTTCTACTTGAAATTCATGACTGTTGTGAGAGAATACTTTTTGCCTCCAGAGAAAAATAGATTTGGCTTGGTTTCAAGTAGGTCTATGCTTTCATCCCTAGGTGTTGGTGATTATGGCCCATGGTTTGCAGTTCACTACCTAGCTGGATGTTCAAGTTGTTCAAATATTCTTAAAGATGAGGATGACCTGAAATATGTTTTGCAGATGAATAATTATTTTGTCAAAGAGCTGGAAGGTAATGGACATGATCAAGAGCCCGTTCTACCAGCAAATAAGCCATCTGTACTTCTATTTGTTGATAGATCATCTGACTCCTCAGAAACTAGGGGGAAAAGTAAGGAGGCTCTTAAAGCTTTTAGAGTATTGGCACAACACTATCATCGTGTGAATCAGACTGGTAACAAGAATAATAACAGTCATGACAAATTTTCTATTCGAGATTATCATGGCTTCAAGAGTACATCTGAACATCCTAGGTTAAAGTTGTCTAGGCCAGCTCAGAAGATTAAACTAAAGGAGAAGATTTCTTCCATCATGATTATGAATGAGGGTAAGCAAGTTAGTTTGGACAATATTCCTTTGGATCTTCAAGGGAGTTCTTTGAATGATATATTGGCTTATCTTCTCCAGCAAAAGAAGGATGGAAAACTAAGCTCCCTAGCAAAGGATTTAGGCTTCCAACTTTTATCTGATGATATTGATGTCAGGTTAGCCAATACACAACAATCACATTCAGAAGTTCAGTCAAATCAATTTCCAACAGAAACTTCTCAAAAAGGCCATACAGATATTGTGATGCTGGATGGAGATACATATAGATCTGCTGGAGAGCTTGAGGAAAATCCCAAATCTACTGAGCTATCTTCTCGGAAAGATGAAGTAAAGAGACCTTCTATTGTCACACATGAAGAGATAAAATCTGTGGAAACTGAAGAATCGATTGCAGATCATGAACTTTCTACCGCTAAATTTATGCTACCAGAAACAGATGATTCTTCAGGTGGAAACAAGGATGAGGGTGAGCAGGCTCATTTTCTTGGTTTTAATGGGTTTTTTTTCTATTCTGATGGTAATTATCAATTACTTGAAAGACTCACGGGTGGTCGTGGAATTCCATCTTTGGTTATCGTTGATCCTTTTTGGCAGCAACACTATGTTTACCCTGATGAGAAAAGTTTCAACTTTTCTTCACTGTGTGATTTTCTTTCTGAGTTTCTTAATGGAACCTTACTTCCATACCAGCAGTCAGAACATGTTCTTCAAGGTCAAAGGGAGGCCACCCATCCTCCATTTGTTAATTTGGATTTTCATGAGGTGGATTCTATACCTCGAATCATGGCTCATACTTTCTCTGAACTTGTTATTGGTTTTAACCTTTCTAACAAAGAAAATACTTCTAATTCATGGAATAAAGATGTCCTGGTCTTGTTTAGCAATAGCTGGTGCTCATTTTGCCAAAGAATGGAAATGGTTGTTCGTGAAGTATATCGGGCCATCAAGGGCTATGTGGATATGTTAAACAGGGGATCTCAGAATGTGAAAGAAAATTTGAATCATGTCATGATGAAGCTTCCGGAAATCTACTTGTTGGACTGTACATTGAATGACTGTGATTTGATACTGAAGTCTGTAGATCAGAGGGAAGTTTATCCTGCTCTGATTTTATTTCCAGCAGAAAAGAAGCAGCCTCTTCTTTATGAAGGAGATATGGCTGTAATTGACGTTATGAAGTTTGTGGCTGAGCACGGAAGTAACTTCCATCAACTTATAAGAGACAAAGTGGCAGTTTTGTGGGTATCTGAAGGAGCAGTCAAGAATCAGAACTTACATGATACTTTGCAAACTGATATCCACCCGGAATCACTTCATTCACGTAACAAATATCATGGAGCCCCAGGTCCAGACAGAATGCTAGACCAGGTGGTCAGACCTAACCTGATGAATTCACCTGCATCAAATGAACTGCATGAAGCATCACCTCACGTGGTTATTGGTTCAGTGTTAATTGCCACAGAAAAGCTTTTGGGGGTTCATCCATTTGATGGATCAAAGATTCTCATTGTTGCAGCCAATCAAGTAACTGGATTTCAAGGTCTTATTCTCAACAAACATATACAATGGAGTTTTCTGCCTAAATTGGAAGAAGGCTTGGAAAATTTGAAAGAGGCTCCTCTGTCCCTGGGGGGTCCAGTAATGAAAACTGGAATGCCTCTTTTATCCTTAACTAGAACAGTTTCCGGAAATAATTTACCTGAAATCATCCCTGGAATTTACTTCCTTGATCAAGTAACAACAATTCGTAAAATTGAGGAGCTGAAGTCAGCAAATCAACCGGTTGGGGATTACTGGTTTTTCTTGGGGTATTCAAGTTGGGGATGGAACCAGTTATATGATGAGATGGCGGAAGGAGCTTGGAACTTGAGTGAGGATGCAACGAGAAATTTAAATTGGCCGTGA
>Glyma11g10870.2 sequence type=predicted peptide gene model=Glyma11g10870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLSLLTVFIVAIASLSLIIAGSSSSQFQWQILTKHNFSSQIRLHPHLLLLVTLPWSGESRSLINQLSLALAAKPPPQQQHFASLKLMLMHRNTEKLLADSIGATATPDETTLFYFHYSVSYKYRGRLRARNILSSLYPYISLAPEEVPLAALNTPLDFRLFVDSTERALVLVDFCGWTPKLLASDNNGTQNAFSVLGNHHGMGFSRGNNRMPVSKGKTNKKVAEEDTCKAELGVDKGFCEVPWLGEFTSLNYGPLEGSKDRNHHVLHSCSSEEFERFHSFYLKFMTVVREYFLPPEKNRFGLVSSRSMLSSLGVGDYGPWFAVHYLAGCSSCSNILKDEDDLKYVLQMNNYFVKELEGNGHDQEPVLPANKPSVLLFVDRSSDSSETRGKSKEALKAFRVLAQHYHRVNQTGNKNNNSHDKFSIRDYHGFKSTSEHPRLKLSRPAQKIKLKEKISSIMIMNEGKQVSLDNIPLDLQGSSLNDILAYLLQQKKDGKLSSLAKDLGFQLLSDDIDVRLANTQQSHSEVQSNQFPTETSQKGHTDIVMLDGDTYRSAGELEENPKSTELSSRKDEVKRPSIVTHEEIKSVETEESIADHELSTAKFMLPETDDSSGGNKDEGEQAHFLGFNGFFFYSDGNYQLLERLTGGRGIPSLVIVDPFWQQHYVYPDEKSFNFSSLCDFLSEFLNGTLLPYQQSEHVLQGQREATHPPFVNLDFHEVDSIPRIMAHTFSELVIGFNLSNKENTSNSWNKDVLVLFSNSWCSFCQRMEMVVREVYRAIKGYVDMLNRGSQNVKENLNHVMMKLPEIYLLDCTLNDCDLILKSVDQREVYPALILFPAEKKQPLLYEGDMAVIDVMKFVAEHGSNFHQLIRDKVAVLWVSEGAVKNQNLHDTLQTDIHPESLHSRNKYHGAPGPDRMLDQVVRPNLMNSPASNELHEASPHVVIGSVLIATEKLLGVHPFDGSKILIVAANQVTGFQGLILNKHIQWSFLPKLEEGLENLKEAPLSLGGPVMKTGMPLLSLTRTVSGNNLPEIIPGIYFLDQVTTIRKIEELKSANQPVGDYWFFLGYSSWGWNQLYDEMAEGAWNLSEDATRNLNWP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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