SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G17680 | AT | Annotation by Michelle Graham. TAIR10: tetratricopeptide repeat (TPR)-containing protein | chr1:6076388-6082160 FORWARD LENGTH=896 | SoyBase | E_val: 0 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0048522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| KOG2076 | KOG | RNA polymerase III transcription factor TFIIIC | JGI | ISS | |
| PTHR23082 | Panther | TRANSCRIPTION INITIATION FACTOR IIIC (TFIIIC), POLYPEPTIDE 3-RELATED | JGI | ISS | |
| PF09797 | PFAM | N-acetyltransferase B complex (NatB) non catalytic subunit | JGI | ISS | |
| UniRef100_G7JV00 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor tau subunit sfc4 n=1 Tax=Medicago truncatula RepID=G7JV00_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D879 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D879 related cluster n=1 Tax=unknown RepID=UPI000233D879 | SoyBase | E_val: 0 | ISS |
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Glyma11g10845 not represented in the dataset |
Glyma11g10845 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g03131 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g102000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g10845.1 sequence type=CDS gene model=Glyma11g10845 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAATGGTGAGGGAAGCGACATTGACGAAGTGAACTATGAAGAGGAAGAAAACACAGCACAGGAGGAAGATGACAATGTCATGGAAGAAGAAGAAGACGAAGAAGATGAGTACACTTTCAGGTTCAAAAACGGGATGAACCCTTTGGACTTTGTTGATGACAATGATGATTCTGGCATTCAACCCTACCAGCGATTCGTGCGTCTTGAACGGGAAGCCCTTGCTGATAAAAAGCGAAAAGCAATTGAACAATGCCATAGTGAAGAACCACCTTCTAAGATGGCTAGGGAAGGTGATGTTTCTGGGGCAAAGATAGCTGAGATAATGGAAGCAATGGATTATTATGGTGTGCGCAAGAGATCGAGAAAGCCTAAGAAGAGAGGCAGGCGAAAAGGATCAAAGAATAAAGATGACCCTAAGCTAACACAGATGCTGGGTGATGCCACGTTTCACTATGCACGTGGCGATTATGACCAGGCTAAAGCTGTGTTGCGTGAAGTTATTAGGCTGGCACCAAATTTGCATGAGTCGTATCACACCCTTGGACTTGTCTATACTTCACTCCAGGATTATAAAAGAGCTATGGCCTTATACTTGATTGCTGCTCATTTGGATGCAAAAGAGTCATCTCTTTGGAAAACGATTTTTACCTGGTCCATAGAACAAGGTTATGTTGATCAAGCCGGTTATTGTCTTTTAAAAGCAATAAAAGCAGATCCCAAAGATGTTACTCTTAGATGTCATCTTGCAAGGCTTTATGCTGAACTTGGACATTATCAAAAAGCTGCTGTTACATATGAGCAAGTACATAAACTATGTTGTGAGAATATTGATGCACTGAAAGCAGCAGCTAAGTTCTACAAAAAATGTGGTCAAGTTGAATACTCTGTTCGTATTCTTGAAGACTATATTAAGAGTCAACCGGATGTAGCAAATGCAAGTGTAGTTGATCTGCTGGGTACCATATTGATGGAAACTAAGGCACATGATAGAGCTCTGCAGCATATTGAACATGCTCAAGCAGTAAATGCGAGGAAAGAATTGCCTTTGAATTTGAAAATTAAGGCCGGAATTTGCCATGCTCATCTTGGAAACCTAGAGATGGCTCAGGTTCTCTTTAATGATTTGAAACCAGAGAATGCAAGCAAGCATATTGACTTGGTTACTGGGGTTGCAGACTCATTAATGGGTCTTGAACATTATAATCCTGCATTGAATTATTATTTGATGTTGGAAGGAAATGTTGAAAAAGAAAATGGTCTTCTATATCTGAAAATTGCTAGGTGTTATATGTCCTTGAAAGAAAGGTCACAAGCAATTCTCTTTTATTCCAAAGCTCTTGAAACACTACAAGATGATGTTGATGCACGCATAACTCTAGCTTCACTTCTGCTTGAAGAGGGAAAAGAAGATGAAGCCATATTCTTGCTGTCTCCTCCAAAGGATTCTGATTTTGGTGAAGCACCTTCTGGAAAGTCAAATAGATGGTGGTTTGATATAAGAATAAAACTGAAGCTCTGCAACATTTATTGGAATAGAGGGACGCTTGATGATTTTGTGGATACAATTTTCCCTTTGATTCGTGAATCATTGTATGTTGCAACTTGTCGACAGAAGGGTAAATCAAAAAAGCGTCTCTCCAAAAGAGATCTGGTTGAAAGGGTTAGGGTTCTGGATGGTCCGGAAAAGGATAATGTATTTCGGGGATTTAGACCAGTTGCTGCACCATCTGACCTGTTGAAAGCTTCCAGGGCAAAAAAGTTGCTCCAGAAGAAGGCAATTGAAAAGGAGAAAAGAAAAGCTGAGGCACTGGCCTCTGGAATTGACTGGCTAAGTGATGATTCAGATGATGAGCCTCAGAAAGAAAACAGAGAACCTCCCTTGTGTAATCTTCTCAAAGATGAAGAACATCACCAGCTAATAATTGATTTGTGCAAGGCATTAGCATCCTTGCAAAGGTATTGGGAAGCACTGGAGATTATTAATCTCTTTCTAAGATTGGCCCATACATCTCTGTCTACTGAAAAAAAAGAGGAGCTTCGATCTCTTGGAGCTCAAATGGCATATAACACCACAGATCCGAAACATGGGTTTGATTGTGTAAAATACATTGTTCAGCAACATCCACACAGTGTTGCAGCTTGGAATTGCTACTACAAGGTTATCTCAAGATTGGAAAACCGAGATACAAGACATTACAAATTTGTACGTGGTATGCAAGGAAAGTTTGTGGATTGTGTGCCTCCTATCCTTATTTCTGGGCATCAGTTTACCATATGTAGCCATCATCAAGATGCAGCAAGGAAATACCTTGAAGCTTATAAACTATTGCCAGAGAATCCTTTGGTTAATCTTTGTGTTGGAACAGCCTTGATCAACTTAGCATTGGGTTTAAGACTTCAAAATAAGCATCAATGTGTTGTACAAGGTTTAGCATTCCTCTACAATAATTTGAGAATCTGCGAGAACAGCCAGGAATCCTTGTACAACATAGCTCGGGCATTCCATCATGTTGGACTTGTAACTCTGGCGGTTATTTATTATGAGAAAGTGATTGCTATGTGCGAGAGAGACTATCCAATTCCAAAACTTCCCAATGAAAATTCAGATATCATCGAAACTCATAAACCTGGTTACTGTGACCTTCGCAGAGAGGCAGCTTACAATTTGCATTTAATCTACAAAAAAAGTGGTGCTCTTGATCTTGCTAGGCAAGTTCTCAGAGATTATTGTACCTTGTGA
>Glyma11g10845.1 sequence type=predicted peptide gene model=Glyma11g10845 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANGEGSDIDEVNYEEEENTAQEEDDNVMEEEEDEEDEYTFRFKNGMNPLDFVDDNDDSGIQPYQRFVRLEREALADKKRKAIEQCHSEEPPSKMAREGDVSGAKIAEIMEAMDYYGVRKRSRKPKKRGRRKGSKNKDDPKLTQMLGDATFHYARGDYDQAKAVLREVIRLAPNLHESYHTLGLVYTSLQDYKRAMALYLIAAHLDAKESSLWKTIFTWSIEQGYVDQAGYCLLKAIKADPKDVTLRCHLARLYAELGHYQKAAVTYEQVHKLCCENIDALKAAAKFYKKCGQVEYSVRILEDYIKSQPDVANASVVDLLGTILMETKAHDRALQHIEHAQAVNARKELPLNLKIKAGICHAHLGNLEMAQVLFNDLKPENASKHIDLVTGVADSLMGLEHYNPALNYYLMLEGNVEKENGLLYLKIARCYMSLKERSQAILFYSKALETLQDDVDARITLASLLLEEGKEDEAIFLLSPPKDSDFGEAPSGKSNRWWFDIRIKLKLCNIYWNRGTLDDFVDTIFPLIRESLYVATCRQKGKSKKRLSKRDLVERVRVLDGPEKDNVFRGFRPVAAPSDLLKASRAKKLLQKKAIEKEKRKAEALASGIDWLSDDSDDEPQKENREPPLCNLLKDEEHHQLIIDLCKALASLQRYWEALEIINLFLRLAHTSLSTEKKEELRSLGAQMAYNTTDPKHGFDCVKYIVQQHPHSVAAWNCYYKVISRLENRDTRHYKFVRGMQGKFVDCVPPILISGHQFTICSHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGLRLQNKHQCVVQGLAFLYNNLRICENSQESLYNIARAFHHVGLVTLAVIYYEKVIAMCERDYPIPKLPNENSDIIETHKPGYCDLRREAAYNLHLIYKKSGALDLARQVLRDYCTL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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