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Report for Sequence Feature Glyma11g10710

Feature Type:gene_model
Chromosome:Gm11
Start:7619108
stop:7622939
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g10710
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23120AT Annotation by Michelle Graham. TAIR10: photosystem II stability/assembly factor, chloroplast (HCF136) | chr5:7778154-7780463 FORWARD LENGTH=403 SoyBaseE_val: 2.00E-180ISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009657GO-bp Annotation by Michelle Graham. GO Biological Process: plastid organization SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0010304GO-bp Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0016117GO-bp Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0042744GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process SoyBaseN/AISS
GO:0042793GO-bp Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009533GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stromal thylakoid SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009543GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0030095GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast photosystem II SoyBaseN/AISS
GO:0031977GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen SoyBaseN/AISS
UniRef100_G7JPH8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Photosystem II stability/assembly factor HCF136 n=1 Tax=Medicago truncatula RepID=G7JPH8_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233D873UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D873 related cluster n=1 Tax=unknown RepID=UPI000233D873 SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g10710
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g10710 not represented in the dataset
Glyma11g10710 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g10710
ParalogEvidenceComments
Glyma12g03020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g10710 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g100800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g10710
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma11g10710
>Glyma11g10710.2   sequence type=transcript   gene model=Glyma11g10710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGGAAGCATATGATCCACTCACTGAATATGAAGTGAACTGTGAAACGGCTTGAAATCACCCGCGAAGCCGTTAGGATAAGGCAGAGAGAGAAAAACAAACAAACAAAGCGGCTTCCAATGGCCACTCTGCAATTCACCTTCACCGACTCAACCACATTGTTCAGGCCTTCTCTACCTTCCACGCGAACCTTCTCTCGAAACCGAAGCCTCATTGTCAAAGCCTCTTCTTCTTCTTCTGACGACTTCTCCAAAAGCAGGCGACGCTTCATCGCCGAAACCGCCGCACTCTCGGTCTCGCTCCCTCAGTTAGCGGCGCGTGCCGAAGACGCGCTTTCGGAGTGGGAGAGAGTATACCTCCCTATCGACCCCGGCGTCGTGCTTCTCGACATCGCTTTTGTCCCCGACGATCCCAACCACGGTTTTCTTCTCGGGACGAGGCAAACCATTCTGGAGACGAAAGATGGAGGAAACACTTGGGCTCCGCGTTCGATTCCTTCTGCTGAAGACGAAGATTTCAACTATCGCTTCAATTCCATCAGCTTCAAAGGGAAGGAAGGGTGGATTGTCGGAAAACCTGCGATTCTGTTGTACACTTCCGATGCCGGAGACAGTTGGGAGAGGATACCTCTCAGTGCTGAACTTCCAGGGGATATGGTGTACATAAAGGCAACCGGTGAGAAGAGTGCGGAGATGGTGACCGACGAAGGTGCCATATATGTTACTGCAAACAGAGGTTACAACTGGAGGGCTGCTGTGCAGGAAACTGTCTCAGCTACTCTTAACAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGCTACTACACTGGAACTTTCAATACTGTCAATCGCTCTCCAGATGGAAGGTATGTTGCAGTCTCAAGTCGGGGCAACTTCTACTTAACCTGGGAGCCTGGTCAGTTAACTGAAGAATTTGAGGAGGTTCCTGTTCAAAGCCGGGGTTTTGGCATTCTTGATGTTGGATATCGTTCAACGGATGAGGCATGGGCAGCAGGAGGAAGTGGTATTCTTTTGAGAACTACTAATGGTGGCAAGTCATGGATCCGTGACAAAGCTGCTGACAACATTGCTGCAAATTTATACTCAGTGAAGTTCATTGATGAGAAGAAGGGATTTGTATTGGGGAATGATGGAGTCTTGCTTCGCTACCTTGGATAGAGTTGTAATGCAACATGGTCTGTTGCCTCAAATGCAATTTTGTAGCAGATTACATATCCATGCTTAACATTCATTACTATGGAGAGAGCTATGGGATCAAATCGACTCCTTGCTGTTGTGCTAAAAAAATGTGAGGAAGTATATAAACAAACTTCACTATTGTAAAGAGAGCTATATTATGTCAATGTAAAATTGTAATTGCCACGTTACTATTATATTAAAATTCAATTTTATGCTGCATGTGTTGTACTGCAAAAGCGCTTATTCAATATAAGAGTTATCACACGAGAGTTTATCACAGTGTTTATGAA
Coding sequences of Glyma11g10710
>Glyma11g10710.1   sequence type=CDS   gene model=Glyma11g10710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTCTGCAATTCACCTTCACCGACTCAACCACATTGTTCAGGCCTTCTCTACCTTCCACGCGAACCTTCTCTCGAAACCGAAGCCTCATTGTCAAAGCCTCTTCTTCTTCTTCTGACGACTTCTCCAAAAGCAGGCGACGCTTCATCGCCGAAACCGCCGCACTCTCGGTCTCGCTCCCTCAGTTAGCGGCGCGTGCCGAAGACGCGCTTTCGGAGTGGGAGAGAGTATACCTCCCTATCGACCCCGGCGTCGTGCTTCTCGACATCGCTTTTGTCCCCGACGATCCCAACCACGGTTTTCTTCTCGGGACGAGGCAAACCATTCTGGAGACGAAAGATGGAGGAAACACTTGGGCTCCGCGTTCGATTCCTTCTGCTGAAGACGAAGATTTCAACTATCGCTTCAATTCCATCAGCTTCAAAGGGAAGGAAGGGTGGATTGTCGGAAAACCTGCGATTCTGTTGTACACTTCCGATGCCGGAGACAGTTGGGAGAGGATACCTCTCAGTGCTGAACTTCCAGGGGATATGGTGTACATAAAGGCAACCGGTGAGAAGAGTGCGGAGATGGTGACCGACGAAGGTGCCATATATGTTACTGCAAACAGAGGTTACAACTGGAGGGCTGCTGTGCAGGAAACTGTCTCAGCTACTCTTAACAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGCTACTACACTGGAACTTTCAATACTGTCAATCGCTCTCCAGATGGAAGGTATGTTGCAGTCTCAAGTCGGGGCAACTTCTACTTAACCTGGGAGCCTGGTCAGTTAACTGAAGAATTTGAGGAGGTTCCTGTTCAAAGCCGGGGTTTTGGCATTCTTGATGTTGGATATCGTTCAACGGATGAGGCATGGGCAGCAGGAGGAAGTGGTATTCTTTTGAGAACTACTAATGGTGGCAAGTCATGGATCCGTGACAAAGCTGCTGACAACATTGCTGCAAATTTATACTCAGTGAAGTTCATTGATGAGAAGAAGGGATTTGTATTGGGGAATGATGGAGTCTTGCTTCGCTACCTTGGATAG

>Glyma11g10710.2   sequence type=CDS   gene model=Glyma11g10710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTCTGCAATTCACCTTCACCGACTCAACCACATTGTTCAGGCCTTCTCTACCTTCCACGCGAACCTTCTCTCGAAACCGAAGCCTCATTGTCAAAGCCTCTTCTTCTTCTTCTGACGACTTCTCCAAAAGCAGGCGACGCTTCATCGCCGAAACCGCCGCACTCTCGGTCTCGCTCCCTCAGTTAGCGGCGCGTGCCGAAGACGCGCTTTCGGAGTGGGAGAGAGTATACCTCCCTATCGACCCCGGCGTCGTGCTTCTCGACATCGCTTTTGTCCCCGACGATCCCAACCACGGTTTTCTTCTCGGGACGAGGCAAACCATTCTGGAGACGAAAGATGGAGGAAACACTTGGGCTCCGCGTTCGATTCCTTCTGCTGAAGACGAAGATTTCAACTATCGCTTCAATTCCATCAGCTTCAAAGGGAAGGAAGGGTGGATTGTCGGAAAACCTGCGATTCTGTTGTACACTTCCGATGCCGGAGACAGTTGGGAGAGGATACCTCTCAGTGCTGAACTTCCAGGGGATATGGTGTACATAAAGGCAACCGGTGAGAAGAGTGCGGAGATGGTGACCGACGAAGGTGCCATATATGTTACTGCAAACAGAGGTTACAACTGGAGGGCTGCTGTGCAGGAAACTGTCTCAGCTACTCTTAACAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGCTACTACACTGGAACTTTCAATACTGTCAATCGCTCTCCAGATGGAAGGTATGTTGCAGTCTCAAGTCGGGGCAACTTCTACTTAACCTGGGAGCCTGGTCAGTTAACTGAAGAATTTGAGGAGGTTCCTGTTCAAAGCCGGGGTTTTGGCATTCTTGATGTTGGATATCGTTCAACGGATGAGGCATGGGCAGCAGGAGGAAGTGGTATTCTTTTGAGAACTACTAATGGTGGCAAGTCATGGATCCGTGACAAAGCTGCTGACAACATTGCTGCAAATTTATACTCAGTGAAGTTCATTGATGAGAAGAAGGGATTTGTATTGGGGAATGATGGAGTCTTGCTTCGCTACCTTGGATAG
Predicted protein sequences of Glyma11g10710
>Glyma11g10710.1   sequence type=predicted peptide   gene model=Glyma11g10710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLQFTFTDSTTLFRPSLPSTRTFSRNRSLIVKASSSSSDDFSKSRRRFIAETAALSVSLPQLAARAEDALSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGGNTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGDSWERIPLSAELPGDMVYIKATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQLTEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTTNGGKSWIRDKAADNIAANLYSVKFIDEKKGFVLGNDGVLLRYLG*

>Glyma11g10710.2   sequence type=predicted peptide   gene model=Glyma11g10710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLQFTFTDSTTLFRPSLPSTRTFSRNRSLIVKASSSSSDDFSKSRRRFIAETAALSVSLPQLAARAEDALSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGGNTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGDSWERIPLSAELPGDMVYIKATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQLTEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTTNGGKSWIRDKAADNIAANLYSVKFIDEKKGFVLGNDGVLLRYLG*






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