SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G27830 | AT | Annotation by Michelle Graham. TAIR10: ribosomal protein L12-A | chr3:10318576-10319151 FORWARD LENGTH=191 | SoyBase | E_val: 4.00E-61 | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0000311 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid large ribosomal subunit | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0009295 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleoid | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0015934 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG1715 | KOG | Mitochondrial/chloroplast ribosomal protein L12 | JGI | ISS | |
| PTHR11809 | Panther | RIBOSOMAL PROTEIN L7/L12 | JGI | ISS | |
| PTHR11809:SF14 | Panther | JGI | ISS | ||
| PF00542 | PFAM | Ribosomal protein L7/L12 C-terminal domain | JGI | ISS | |
| UniRef100_D7LPL3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L12-C n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LPL3_ARALL | SoyBase | E_val: 1.00E-58 | ISS |
| UniRef100_I1LIR2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LIR2_SOYBN | SoyBase | E_val: 1.00E-126 | ISS |
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Glyma11g10550 not represented in the dataset |
Glyma11g10550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g02850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g099300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g10550.2 sequence type=CDS gene model=Glyma11g10550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTAATAGTCACCTCAACCCACCCCATAACCAACCCCTTCATAATCTCCTTATCCTATCTTGATCCTTCACTTCACTTCTTCCATTCTCTCCCTCCCTCAAATCCCAAACCAGCAAAAACCTTTCTTCACAAAATGGCCTCAACAACTCTAACAACCCTCACCCTCCGCACGCTATCTTATCCTACACCCTCCTCTTCTTACCCTACGCACCTCTCCGCCAAACCCTCCTCCCTCCAATTCCCCAATCTCTCCCACCGCGCCGCCACCACGCGCCGCCCCCGTGTCGTCGTCTCCGCCGTTGAGGCGCCGGAGAAAATCACCAAGCTCGGCGACGAAATCGCCGGACTCACGCTCGAGGAGGCCAAGAACCTCGTCGACTTCCTCCAGGACAAGCTCGGCGTCTCCGCGGCGGCGTTCGCCCCTGTGGCAGTCGCCGCGGGTGCCGGCGGCGCTGTGGCGGACGCGCCGGCGGTGGTTGAGGAGAAGACGGAGTTCGACGTGGTGATCGAGGAGGTGCCGAGCAACGCTCGAATCGCGGTGATTAAGGCGGTGAGGGCATTGACGAACCTAGCGCTGAAGGAGGCGAAGGAGTTGATCGAAGGGTTGCCGAAGAAGTTCAAGGAAGGGATTTCAAAGGACGAAGCTGAAGATGCGAAGAAGCAACTCGAAGAAGCTGGTGCCAAGGTTACCATTGCTTAA
>Glyma11g10550.2 sequence type=predicted peptide gene model=Glyma11g10550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVIVTSTHPITNPFIISLSYLDPSLHFFHSLPPSNPKPAKTFLHKMASTTLTTLTLRTLSYPTPSSSYPTHLSAKPSSLQFPNLSHRAATTRRPRVVVSAVEAPEKITKLGDEIAGLTLEEAKNLVDFLQDKLGVSAAAFAPVAVAAGAGGAVADAPAVVEEKTEFDVVIEEVPSNARIAVIKAVRALTNLALKEAKELIEGLPKKFKEGISKDEAEDAKKQLEEAGAKVTIA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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