Glyma11g10430 - SoyBase

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Report for Sequence Feature Glyma11g10430

Feature Type:	gene_model
Chromosome:	Gm11
Start:	7462670
stop:	7466540
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g10430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G16595	AT	Annotation by Michelle Graham. TAIR10: Translocon-associated protein (TRAP), alpha subunit \| chr2:7198363-7200086 FORWARD LENGTH=251	SoyBase	E_val: 1.00E-92	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1631	KOG	Translocon-associated complex TRAP, alpha subunit	JGI		ISS
PTHR12924	Panther	TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT	JGI		ISS
PF03896	PFAM	Translocon-associated protein (TRAP), alpha subunit	JGI		ISS
UniRef100_B9STC6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Translocon-associated protein, alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9STC6_RICCO	SoyBase	E_val: 5.00E-130	ISS
UniRef100_I1LIQ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LIQ3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g10430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g10430

Paralog	Evidence	Comments
Glyma12g02750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g10430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g098300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g10430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g10430

Limit To All Plant Sequences

>Glyma11g10430.2   sequence type=transcript   gene model=Glyma11g10430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAACATCTAAGCAAAGAGAGTACGCCCTATATTTAAACGACATCGTTCGTGGAATGCGCAACTTCTTTCCCTAAAACACACCCCATTACAATTCTCTGTATTTCAGGGTTGAAAATTCACACGTTGAATTGAAATTTGGAAATCGTGACACCAACCCTACACCACCATGGCCTCCGTAGACAAATTTTGGGCTTTTGCCCTCGCTCTTCTCCTCCTTGCCTCCCCTCTCCTCCAAGTTGCTAGGTGTCAGTCAGACTCCGAAGATGTAGTGGAGGCTGCTGAAGAATCAAGTGATATCGGCATTGTTGGTGATGATGTCCAAGACTTTGGTGATGGGACCTTCCCTTCTGCTCCAGGAATTGAAACAATAAGTGTTTTTCCAAAAAATAGTGCGAGATTGATAACAGCTGGAGAAGAGACAGAGCTGCTTGTTGGTGTTAAAAATGATGGGGATTCAAGCTTGAATGTTATTGCGATCAAGGCTAGTGTTCACCTTCCTTTTGATCACCGTATGCTGGTTCAAAATCTTACTGCACAGGGTTTTAACAATGGTTCTGTACCAGCCTCAGCACAAGCTACTTTCCCATATTTATTTGCAGTCAGTAAGTTCTTGCAGGCAGGAACTTTTGACCTTGTGGGCACTATTATATACGAGATAGATGAACATCCATATCAAAGCACCTTTTTTAATGGCACTGTTGAGGTTGTTGAATCTGGTGCTTTTCTTAGCATGGAATCCGTTTTTCTTGTTACTCTTGGGGTTGCACTCCTTGTCCTCCTGGGGCTATGGATTCATGGCCAAATACAGTACCTATCTAAGAAAACAAAGAGGGCTCCAAAAGTTGAAGTTGGGACTAAGACTACTGATGCTTCAACAGATGAATGGCTACAGGGAACTGCTTATACTCAGTCTCTGTCAAGCAAGTCAAAGAAGAAGAAGTAGATAAACAATTTCTCACGTTCAGCCACTCACTAGACTCTACCATGGATATGGAATACAGAATCCTGTAACTGACTAGGGTTGAGTATGAGAGAACACGAGGAAGTAGTTGTGAAATTTTGGCTGAAAGATCCAGCTTTCTGTTGTAGCTTAAGAATTTTTACTTTTCTACATTTGAATGAAGTTGAGCTTTTTCTAAACTAACAAGGATTTCAGTTAGGAAGGATACAACTTTTGAGATGTGGCATAATTTTTATTAGATAACGTTTGTTTTACTTTTACCTATATCCTGTGTTTGTGGGTGAATTTGGA

Coding sequences of Glyma11g10430

Limit To All Plant Sequences

>Glyma11g10430.1   sequence type=CDS   gene model=Glyma11g10430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCGTAGACAAATTTTGGGCTTTTGCCCTCGCTCTTCTCCTCCTTGCCTCCCCTCTCCTCCAAGTTGCTAGGTGTCAGTCAGACTCCGAAGATGTAGTGGAGGCTGCTGAAGAATCAAGTGATATCGGCATTGTTGGTGATGATGTCCAAGACTTTGGTGATGGGACCTTCCCTTCTGCTCCAGGAATTGAAACAATAAGTGTTTTTCCAAAAAATAGTGCGAGATGTAAGAATGTGATAACAGCTGGAGAAGAGACAGAGCTGCTTGTTGGTGTTAAAAATGATGGGGATTCAAGCTTGAATGTTATTGCGATCAAGGCTAGTGTTCACCTTCCTTTTGATCACCGTATGCTGGTTCAAAATCTTACTGCACAGGGTTTTAACAATGGTTCTGTACCAGCCTCAGCACAAGCTACTTTCCCATATTTATTTGCAGTCAGTAAGTTCTTGCAGGCAGGAACTTTTGACCTTGTGGGCACTATTATATACGAGATAGATGAACATCCATATCAAAGCACCTTTTTTAATGGCACTGTTGAGGTTGTTGAATCTGGTGCTTTTCTTAGCATGGAATCCGTTTTTCTTGTTACTCTTGGGGTTGCACTCCTTGTCCTCCTGGGGCTATGGATTCATGGCCAAATACAGTACCTATCTAAGAAAACAAAGAGGGCTCCAAAAGTTGAAGTTGGGACTAAGACTACTGATGCTTCAACAGATGAATGGCTACAGGGAACTGCTTATACTCAGTCTCTGTCAAGCAAGTCAAAGAAGAAGAAGTAG

>Glyma11g10430.2   sequence type=CDS   gene model=Glyma11g10430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCGTAGACAAATTTTGGGCTTTTGCCCTCGCTCTTCTCCTCCTTGCCTCCCCTCTCCTCCAAGTTGCTAGGTGTCAGTCAGACTCCGAAGATGTAGTGGAGGCTGCTGAAGAATCAAGTGATATCGGCATTGTTGGTGATGATGTCCAAGACTTTGGTGATGGGACCTTCCCTTCTGCTCCAGGAATTGAAACAATAAGTGTTTTTCCAAAAAATAGTGCGAGATTGATAACAGCTGGAGAAGAGACAGAGCTGCTTGTTGGTGTTAAAAATGATGGGGATTCAAGCTTGAATGTTATTGCGATCAAGGCTAGTGTTCACCTTCCTTTTGATCACCGTATGCTGGTTCAAAATCTTACTGCACAGGGTTTTAACAATGGTTCTGTACCAGCCTCAGCACAAGCTACTTTCCCATATTTATTTGCAGTCAGTAAGTTCTTGCAGGCAGGAACTTTTGACCTTGTGGGCACTATTATATACGAGATAGATGAACATCCATATCAAAGCACCTTTTTTAATGGCACTGTTGAGGTTGTTGAATCTGGTGCTTTTCTTAGCATGGAATCCGTTTTTCTTGTTACTCTTGGGGTTGCACTCCTTGTCCTCCTGGGGCTATGGATTCATGGCCAAATACAGTACCTATCTAAGAAAACAAAGAGGGCTCCAAAAGTTGAAGTTGGGACTAAGACTACTGATGCTTCAACAGATGAATGGCTACAGGGAACTGCTTATACTCAGTCTCTGTCAAGCAAGTCAAAGAAGAAGAAGTAG

Predicted protein sequences of Glyma11g10430

Limit To All Plant Sequences

>Glyma11g10430.1   sequence type=predicted peptide   gene model=Glyma11g10430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVDKFWAFALALLLLASPLLQVARCQSDSEDVVEAAEESSDIGIVGDDVQDFGDGTFPSAPGIETISVFPKNSARCKNVITAGEETELLVGVKNDGDSSLNVIAIKASVHLPFDHRMLVQNLTAQGFNNGSVPASAQATFPYLFAVSKFLQAGTFDLVGTIIYEIDEHPYQSTFFNGTVEVVESGAFLSMESVFLVTLGVALLVLLGLWIHGQIQYLSKKTKRAPKVEVGTKTTDASTDEWLQGTAYTQSLSSKSKKKK*

>Glyma11g10430.2   sequence type=predicted peptide   gene model=Glyma11g10430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVDKFWAFALALLLLASPLLQVARCQSDSEDVVEAAEESSDIGIVGDDVQDFGDGTFPSAPGIETISVFPKNSARLITAGEETELLVGVKNDGDSSLNVIAIKASVHLPFDHRMLVQNLTAQGFNNGSVPASAQATFPYLFAVSKFLQAGTFDLVGTIIYEIDEHPYQSTFFNGTVEVVESGAFLSMESVFLVTLGVALLVLLGLWIHGQIQYLSKKTKRAPKVEVGTKTTDASTDEWLQGTAYTQSLSSKSKKKK*

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