Report for Sequence Feature Glyma11g10400
Feature Type: gene_model
Chromosome: Gm11
Start: 7453078
stop: 7454906
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g10400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G34860 AT
Annotation by Michelle Graham. TAIR10: Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571
SoyBase E_val: 0 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004564 GO-mf
Annotation by Michelle Graham. GO Molecular Function: beta-fructofuranosidase activity
SoyBase N/A ISS
PF04853 PFAM
Plant neutral invertase
JGI ISS
UniRef100_I0CL53 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Neutral/alkaline invertase n=1 Tax=Manihot esculenta RepID=I0CL53_MANES
SoyBase E_val: 0 ISS
UniRef100_I1LPG4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LPG4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma11g10400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma11g10400
Paralog Evidence Comments
Glyma12g02690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g10400 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma11g10400
Coding sequences of Glyma11g10400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g10400.2 sequence type=CDS gene model=Glyma11g10400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTGTTTGTAAGAGACTTTGTCCCTAGTGCTTTGGTTTTTCTGACGAAGGGGGAACCTGAAATTGTTAGAAATTTTATCTTGAAGACCCTTCGCCTTCAATCATGGGAGAAAACTATTGATAAGTTTCACCTAGAAGAAGGAGTAATGCCAGCAAGTTTTAAAGTACTTCATGATCCAGTCAGAAACCATGAGACCTTGATAGCAGACTTTGGTGAAAGTGCAATAGGCAGGGTTTCCCATATTGATTCGGGATTTTGGTGTGCATACACAAAGTCCACAGGAGACAATTCCTTGGCTGAACTGCCTGAATGTCAGAAGGGCATGCGCTTGATTTTGAATTTATGCCTTTCCGAGGGATTTGACACCTTCCCCACTCTACTATGTGCGGATGGATGCTGCATGATAGATCGTAGAATGGGTGTTTACGGTTATTCAATTGAGATTCAATCACTTTTCTTCATGGCTTTAGGGTGTGCCTTGCTATTGCTAAAGGAAGATGCTGAAGGCGAGGAGTTCAGAGAACGAATTACCACACGCTTGCATGCCTTAAGCTATCACCTGAGAAGCTATTTTTGGTTGGATTTGAAGCAACTTAACGATGTATATCACTTCAAAACAGAAGAATACTCACATACTGCAGTCAACAAGTTTAATGTCATTCCTGATTCTCTACCTGATTGGGTTTTTGATTTCATGCCACTTAAAGGTGCAATTTTGTCCAGCTTGACTACTCCTGAGCAATCCATTGCAATCATGGATCTCATCGAATCTCGGTGGCAGGAACTGATTGGGGAGATGCCTCTAAAAGTTTGTTATCCAGCCCTTGAAAACCATGATTACCACAATGGAGGATCTTGGCCAGTTCTTCTATGGCTTCTTGTTGCTGCCTCTATCAAGACAGGACGACCCCACATTGCAAAACGAGCCCTTGAAATTGCTGAAACTAGGTTGCTCAAGGACAACTGGACCGAATATTATGATGGAAAGCTTGGTCGTTACATTGGGAAGCAGGCACGCAAATACCAAACTTGGTCCATTGCTGGTTACTTGGTGGCTAAGATGTTTTTGGACGATCCATCACATTTAGGTATGGTGGCACTAGAGGAAGACAAACACCAAAAGCCTGTGCTCAGAAGATCAAATTCATTGCAAGTTGATTTTGACTTGTAA
Predicted protein sequences of Glyma11g10400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g10400.2 sequence type=predicted peptide gene model=Glyma11g10400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
VFVRDFVPSALVFLTKGEPEIVRNFILKTLRLQSWEKTIDKFHLEEGVMPASFKVLHDPVRNHETLIADFGESAIGRVSHIDSGFWCAYTKSTGDNSLAELPECQKGMRLILNLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYSIEIQSLFFMALGCALLLLKEDAEGEEFRERITTRLHALSYHLRSYFWLDLKQLNDVYHFKTEEYSHTAVNKFNVIPDSLPDWVFDFMPLKGAILSSLTTPEQSIAIMDLIESRWQELIGEMPLKVCYPALENHDYHNGGSWPVLLWLLVAASIKTGRPHIAKRALEIAETRLLKDNWTEYYDGKLGRYIGKQARKYQTWSIAGYLVAKMFLDDPSHLGMVALEEDKHQKPVLRRSNSLQVDFDL*