Glyma11g10340 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma11g10340

Feature Type:	gene_model
Chromosome:	Gm11
Start:	7432908
stop:	7437544
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g10340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38810	AT	Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein \| chr4:18115607-18118860 REVERSE LENGTH=375	SoyBase	E_val: 9.00E-174	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
UniRef100_B9T715	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9T715_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LIP5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LIP5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g10340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g10340

Paralog	Evidence	Comments
Glyma12g02630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g10340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g097500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g10340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g10340

Limit To All Plant Sequences

>Glyma11g10340.2   sequence type=transcript   gene model=Glyma11g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATAAATAAAGGCACATGATGAGTAATGGAGAAGGAGAAACTAGATGGTTGATAAGTACTACTATAATAGTATAACTAAGGAAGGAGTAAGGGTGATGGTGGTTCTGATCTGACTTTTGGCGGTGTGGGAGTCACGAGAGCAGCAAGGGGAAGTCACAAGAGTCACAAGAATGGAGAGAGGTTCGGGCAAGCTGAGCAGGAAGAAAAGTGGTGGTGGAAACGGACAGGTTCTAGACGGTTCTAATATTATGGAGTTGGTTGGAAACCAGCAAGTTTTCACCACCTTCGTGGACCATAAGTTTCACGAGTTAGACACAGACAAAGATGGCAAACTCTCTGTCAAAGAGCTCCAGCCTGCTGTTGCTGACATAGGAGCTGCTCTTGGTTTGCCTGCTCACGGCACTAATCCTGATTCTGATCACATCTATTCCGAGGTGTTGAATGAATTCACACATGGGAAGCAGGAAAACGTGAGCAAGAGTGAGTTCAAAGAGGTTCTCTCAGACATTCTTTTGGGTATGGCTGCTGGACTGAAGCGTGATCCAATTGTGATACTTCGCATTGATGGAGAAGATCTTTTGGAGTTTGTTAATGGTTCAGGTTATGAAGCTGAAATGAATTCCATATTCTCTCAGATTGAGTCCCCTAACAGATCACTTCATGATCATATAATTGAAGCTCTTGGCAAGCTCACTGTTGAACAAGGAATTCCTCCTACATCAGATTCTTGGGTAGCCAAATTATACATACATACACATATATATATATATATATATATCGTTGACTTTCTTTACACATGTACTCATGTTATCAAAAAAAGACATGAAAAATTAAAACAAATTTTCATTTGTTGCGAAGAAGCTTTATTTTATACTTTAATAACCAAGAAACATATATAAAAATCTCAAACTTGT

>Glyma11g10340.3   sequence type=transcript   gene model=Glyma11g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATAAATAAAGGCACATGATGAGTAATGGAGAAGGAGAAACTAGATGGTTGATAAGTACTACTATAATAGTATAACTAAGGAAGGAGTAAGGGTGATGGTGGTTCTGATCTGACTTTTGGCGGTGTGGGAGTCACGAGAGCAGCAAGGGGAAGTCACAAGAGTCACAAGAATGGAGAGAGGTTCGGGCAAGCTGAGCAGGAAGAAAAGTGGTGGTGGAAACGGACAGGTTCTAGACGGTTCTAATATTATGGAGTTGGTTGGAAACCAGCAAGTTTTCACCACCTTCGTGGACCATAAGTTTCACGAGTTAGACACAGACAAAGATGGCAAACTCTCTGTCAAAGAGCTCCAGCCTGCTGTTGCTGACATAGGAGCTGCTCTTGGTTTGCCTGCTCACGGCACTAATCCTGATTCTGATCACATCTATTCCGAGGTGTTGAATGAATTCACACATGGGAAGCAGGAAAACGTGAGCAAGAGTGAGTTCAAAGAGGTTCTCTCAGACATTCTTTTGGGTATGGCTGCTGGACTGAAGCGTGATCCAATTGTGATACTTCGCATTGATGGAGAAGATCTTTTGGAGTTTGTTAATGGTTCAGGTTATGAAGCTGAAATGAATTCCATATTCTCTCAGATTGAGTCCCCTAACAGATCACTTCATGATCATATAATTGAAGCTCTTGGCAAGCTCACTGTTGAACAAGGAATTCCTCCTACATCAGATTCTTGGGTTTTGAGCAACATTATGGAACCCGCACTGCTATCTCAAGCTGGCTCTGATTTGGATAAGTCCGTTTCTCAAGAGACATTTTTGGAGGAATTTAAGATAGTGGCAATGAGTGTGGCTAATCGTCTTAAGGAGCAACCTGTCATAGTTGCTCACAGTGAGAACACCTTTGATGGAAGTGGTGTTAAGAGACTATTATCCAACAAGTTTGAATTGGACAAGATTTTGAACTCAGCCATGGAGACTATGCCAAAAGATCGAAATGGAAAGCTTTCAAAGGAGTATCTAAGGGTGGCACTGGACACGGTGGCTCCATCTGCTGGTTTACCTCCTGTTGGTGCAATTGAAGAGATGATGCGAAGGTGGTGAAAGAAGACGAATTCAAGAAACTATTAACTGAAATACTGGGGAACATAATGTTGCAGTTGGAGGGAAATCCCATATCAGTTTCTTCAAATTCGGTAGTACACGAGCCACTAGACTCATCTTCTACACTTCTGCAGCCATCCCCTAGTGAAACAGCAGCATAGCTGAGTTGTTTAAGTATATGATGGGTAAAAGAACCGAGCAATATAATAAAATTTTTATTCTATGTAAATTATTACTGGCATAATTTGTGTTTTGAGCTGTCAAATTTAAATGGTGTTGTACTTGAGTCATCGTTCAGGCTGTTTGATCGTAACCTAAAAAGAGTAAGATTAATTATTTTACTATAATGCATACATTATCAAACCATTATGGATATTTTCAGATGTGATGTGATTATATCCTAGCTGCTCTATATAATATGAAGTAATATTGATTTATATCCCATGTGATAATTTCTTCTAGTAGCAAATAGCAATGAATGTGAAAATGGGATTGTTAAACCCCTCAATCAAA

Coding sequences of Glyma11g10340

Limit To All Plant Sequences

>Glyma11g10340.1   sequence type=CDS   gene model=Glyma11g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGAGGTTCGGGCAAGCTGAGCAGGAAGAAAAGTGGTGGTGGAAACGGACAGGTTCTAGACGGTTCTAATATTATGGAGTTGGTTGGAAACCAGCAAGTTTTCACCACCTTCGTGGACCATAAGTTTCACGAGTTAGACACAGACAAAGATGGCAAACTCTCTGTCAAAGAGCTCCAGCCTGCTGTTGCTGACATAGGAGCTGCTCTTGGTTTGCCTGCTCACGGCACTAATCCTGATTCTGATCACATCTATTCCGAGGTGTTGAATGAATTCACACATGGGAAGCAGGAAAACGTGAGCAAGAGTGAGTTCAAAGAGGTTCTCTCAGACATTCTTTTGGGTATGGCTGCTGGACTGAAGCGTGATCCAATTGTGATACTTCGCATTGATGGAGAAGATCTTTTGGAGTTTGTTAATGGTTCAGGTTATGAAGCTGAAATGAATTCCATATTCTCTCAGATTGAGTCCCCTAACAGATCACTTCATGATCATATAATTGAAGCTCTTGGCAAGCTCACTGTTGAACAAGGAATTCCTCCTACATCAGATTCTTGGGTTTTGAGCAACATTATGGAACCCGCACTGCTATCTCAAGCTGGCTCTGATTTGGATAAGTCCGTTTCTCAAGAGACATTTTTGGAGGAATTTAAGATAGTGGCAATGAGTGTGGCTAATCGTCTTAAGGAGCAACCTGTCATAGTTGCTCACAGTGAGAACACCTTTGATGGAAGTGGTGTTAAGAGACTATTATCCAACAAGTTTGAATTGGACAAGATTTTGAACTCAGCCATGGAGACTATGCCAAAAGATCGAAATGGAAAGCTTTCAAAGGAGTATCTAAGGGTGGCACTGGACACGGTGGCTCCATCTGCTGGTTTACCTCCTGTTGGTGCAATTGAAGAGATGGACAAGGTTATTGGTGAAGTCTTTAAGATGGTGAATGCAGATGATGCGAAGGTGGTGAAAGAAGACGAATTCAAGAAACTATTAACTGAAATACTGGGGAACATAATGTTGCAGTTGGAGGGAAATCCCATATCAGTTTCTTCAAATTCGGTAGTACACGAGCCACTAGACTCATCTTCTACACTTCTGCAGCCATCCCCTAGTGAAACAGCAGCATAG

>Glyma11g10340.2   sequence type=CDS   gene model=Glyma11g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGAGGTTCGGGCAAGCTGAGCAGGAAGAAAAGTGGTGGTGGAAACGGACAGGTTCTAGACGGTTCTAATATTATGGAGTTGGTTGGAAACCAGCAAGTTTTCACCACCTTCGTGGACCATAAGTTTCACGAGTTAGACACAGACAAAGATGGCAAACTCTCTGTCAAAGAGCTCCAGCCTGCTGTTGCTGACATAGGAGCTGCTCTTGGTTTGCCTGCTCACGGCACTAATCCTGATTCTGATCACATCTATTCCGAGGTGTTGAATGAATTCACACATGGGAAGCAGGAAAACGTGAGCAAGAGTGAGTTCAAAGAGGTTCTCTCAGACATTCTTTTGGGTATGGCTGCTGGACTGAAGCGTGATCCAATTGTGATACTTCGCATTGATGGAGAAGATCTTTTGGAGTTTGTTAATGGTTCAGGTTATGAAGCTGAAATGAATTCCATATTCTCTCAGATTGAGTCCCCTAACAGATCACTTCATGATCATATAATTGAAGCTCTTGGCAAGCTCACTGTTGAACAAGGAATTCCTCCTACATCAGATTCTTGGGTAGCCAAATTATACATACATACACATATATATATATATATATATATCGTTGACTTTCTTTACACATGTACTCATGTTATCAAAAAAAGACATGAAAAATTAAAACAAATTTTCATTTGTTGCGAAGAAGCTTTATTTTATACTTTAATAACCAAGAAACATATATAA

>Glyma11g10340.3   sequence type=CDS   gene model=Glyma11g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGAGGTTCGGGCAAGCTGAGCAGGAAGAAAAGTGGTGGTGGAAACGGACAGGTTCTAGACGGTTCTAATATTATGGAGTTGGTTGGAAACCAGCAAGTTTTCACCACCTTCGTGGACCATAAGTTTCACGAGTTAGACACAGACAAAGATGGCAAACTCTCTGTCAAAGAGCTCCAGCCTGCTGTTGCTGACATAGGAGCTGCTCTTGGTTTGCCTGCTCACGGCACTAATCCTGATTCTGATCACATCTATTCCGAGGTGTTGAATGAATTCACACATGGGAAGCAGGAAAACGTGAGCAAGAGTGAGTTCAAAGAGGTTCTCTCAGACATTCTTTTGGGTATGGCTGCTGGACTGAAGCGTGATCCAATTGTGATACTTCGCATTGATGGAGAAGATCTTTTGGAGTTTGTTAATGGTTCAGGTTATGAAGCTGAAATGAATTCCATATTCTCTCAGATTGAGTCCCCTAACAGATCACTTCATGATCATATAATTGAAGCTCTTGGCAAGCTCACTGTTGAACAAGGAATTCCTCCTACATCAGATTCTTGGGTTTTGAGCAACATTATGGAACCCGCACTGCTATCTCAAGCTGGCTCTGATTTGGATAAGTCCGTTTCTCAAGAGACATTTTTGGAGGAATTTAAGATAGTGGCAATGAGTGTGGCTAATCGTCTTAAGGAGCAACCTGTCATAGTTGCTCACAGTGAGAACACCTTTGATGGAAGTGGTGTTAAGAGACTATTATCCAACAAGTTTGAATTGGACAAGATTTTGAACTCAGCCATGGAGACTATGCCAAAAGATCGAAATGGAAAGCTTTCAAAGGAGTATCTAAGGGTGGCACTGGACACGGTGGCTCCATCTGCTGGTTTACCTCCTGTTGGTGCAATTGAAGAGATGATGCGAAGGTGGTGA

Predicted protein sequences of Glyma11g10340

Limit To All Plant Sequences

>Glyma11g10340.1   sequence type=predicted peptide   gene model=Glyma11g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERGSGKLSRKKSGGGNGQVLDGSNIMELVGNQQVFTTFVDHKFHELDTDKDGKLSVKELQPAVADIGAALGLPAHGTNPDSDHIYSEVLNEFTHGKQENVSKSEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFVNGSGYEAEMNSIFSQIESPNRSLHDHIIEALGKLTVEQGIPPTSDSWVLSNIMEPALLSQAGSDLDKSVSQETFLEEFKIVAMSVANRLKEQPVIVAHSENTFDGSGVKRLLSNKFELDKILNSAMETMPKDRNGKLSKEYLRVALDTVAPSAGLPPVGAIEEMDKVIGEVFKMVNADDAKVVKEDEFKKLLTEILGNIMLQLEGNPISVSSNSVVHEPLDSSSTLLQPSPSETAA*

>Glyma11g10340.2   sequence type=predicted peptide   gene model=Glyma11g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERGSGKLSRKKSGGGNGQVLDGSNIMELVGNQQVFTTFVDHKFHELDTDKDGKLSVKELQPAVADIGAALGLPAHGTNPDSDHIYSEVLNEFTHGKQENVSKSEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFVNGSGYEAEMNSIFSQIESPNRSLHDHIIEALGKLTVEQGIPPTSDSWVAKLYIHTHIYIYIYIVDFLYTCTHVIKKRHEKLKQIFICCEEALFYTLITKKHI*

>Glyma11g10340.3   sequence type=predicted peptide   gene model=Glyma11g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERGSGKLSRKKSGGGNGQVLDGSNIMELVGNQQVFTTFVDHKFHELDTDKDGKLSVKELQPAVADIGAALGLPAHGTNPDSDHIYSEVLNEFTHGKQENVSKSEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFVNGSGYEAEMNSIFSQIESPNRSLHDHIIEALGKLTVEQGIPPTSDSWVLSNIMEPALLSQAGSDLDKSVSQETFLEEFKIVAMSVANRLKEQPVIVAHSENTFDGSGVKRLLSNKFELDKILNSAMETMPKDRNGKLSKEYLRVALDTVAPSAGLPPVGAIEEMMRRW*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain