Glyma11g10310 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma11g10310): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma11g10310): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma11g10310

Feature Type:	gene_model
Chromosome:	Gm11
Start:	7411349
stop:	7413326
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g10310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47450	AT	Annotation by Michelle Graham. TAIR10: chloroplast signal recognition particle component (CAO) \| chr2:19472781-19473902 FORWARD LENGTH=373	SoyBase	E_val: 7.00E-141	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0010155	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of proton transport	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0045038	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0080085	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle, chloroplast targeting	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
PF00385	PFAM	chromo' (CHRromatin Organisation MOdifier) domain	JGI		ISS
UniRef100_B9RF69	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat domain protein, putative n=1 Tax=Ricinus communis RepID=B9RF69_RICCO	SoyBase	E_val: 2.00E-146	ISS
UniRef100_UPI000233C6B1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C6B1 related cluster n=1 Tax=unknown RepID=UPI000233C6B1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g10310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g10310 not represented in the dataset	Glyma11g10310 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g10310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g097200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g10310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g10310

Limit To All Plant Sequences

>Glyma11g10310.1   sequence type=CDS   gene model=Glyma11g10310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCCATATTCGCCACCAAACCCGCTTCCCATTCTCTCCTCTTAACTAAACTCTCTCCGAATCCCAAACACTTGTTCCCTCCACACCAACAATCCTTTCACAACATCCGCCACAAACCCACGCGCTTCCGCCCCGTCACCGCTGTTTTCCAAAACCAACATCAACAAGATGCAGCTGCAGCTTCCAACCACACCGAAGATGAGTCCTACGGCGAAGTCAAAGGCATCATTGGAAGCAGAGCCTTGGAAGCCGCCACCGGAATGGAGTACCTCATCGAGTGGAACGACGGCCACGCGCCGTCCTGGGTTCCCGCCGACTTCATAGCCAAAGACGTCGTCGACGAGTACGAAACTCCCTGGTGGACTGCCGCCAAGAAAGCCGACGAGTCCGCGTTGAAAAACTTAACCAAATCCGACGACGGCCGCGACGTCGACGCCGTGGACGCCGACGGCCGCACTGCGCTCCTCTTCGTCGCCGGACTCGGCTCGGAGTCCTGCGTGAAGCTGCTAGCGGAGGCCGGCGCGAATCTGGACCACCGCGACCGGAGCGGCGGCCTCGCGGCTCTGCACATGGCGGCGGGGTACGTCAGGCCCGGCGTGGCGAAGGTTCTCTTGGATCTCGGCGCGGATCCCGAGGTGGCGGACGACCGCGGGAGAACGGCGTTGGATCTGGCGAGGGAGATTCTGAAGGTGACGCCGAAGGGGAATCCGATGCAGTTCGGACGCAGGATTGGACTGGAAGGTGTGATTAGGGTTTTGGAAGGGGCAGTGTTCGAGTACGCGGAGGTGCAGGAGATTCTGGAACGGAGAGGAAAGGGTGAGAATTTGGAGTATCTTGTGCGGTGGAAGGACGGTGGTGCCAACGAGTGGGTGAAGGCGAAGTTTGTGGCGGAGGATTTGGTGAAAGACTACGAGGCTGGCCTCGAGTACGCCGTCGCTGAGGCGGTGCTCGCGAAAAGGGTAGCGGATGAAGGGACGCCGGAGTTTTTGGTTAAATGGGCCGATTTGGAGGAGCCCACATGGGAGCCCGAGGAGAATGTGGACCCAGAGCTTGTCAAAGCTTTCGAGGGAAGTAACAACCAGGCCCAGCCCAGTAGTAATGGGCCCGCTGTGGTCTTTTCCAATCAGGATAGCCCTAGCCTGTGA

Predicted protein sequences of Glyma11g10310

Limit To All Plant Sequences

>Glyma11g10310.1   sequence type=predicted peptide   gene model=Glyma11g10310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAIFATKPASHSLLLTKLSPNPKHLFPPHQQSFHNIRHKPTRFRPVTAVFQNQHQQDAAAASNHTEDESYGEVKGIIGSRALEAATGMEYLIEWNDGHAPSWVPADFIAKDVVDEYETPWWTAAKKADESALKNLTKSDDGRDVDAVDADGRTALLFVAGLGSESCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGVAKVLLDLGADPEVADDRGRTALDLAREILKVTPKGNPMQFGRRIGLEGVIRVLEGAVFEYAEVQEILERRGKGENLEYLVRWKDGGANEWVKAKFVAEDLVKDYEAGLEYAVAEAVLAKRVADEGTPEFLVKWADLEEPTWEPEENVDPELVKAFEGSNNQAQPSSNGPAVVFSNQDSPSL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain