Glyma11g10290 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma11g10290

Feature Type:	gene_model
Chromosome:	Gm11
Start:	7398497
stop:	7399087
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g10290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22100	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr3:7783711-7784469 REVERSE LENGTH=252	SoyBase	E_val: 4.00E-10	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
UniRef100_G7IKN0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH117 n=1 Tax=Medicago truncatula RepID=G7IKN0_MEDTR	SoyBase	E_val: 2.00E-15	ISS
UniRef100_I1LU89	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LU89_SOYBN	SoyBase	E_val: 3.00E-16	ISS

Expression Patterns of Glyma11g10290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g10290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma11g10290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g10290

Limit To All Plant Sequences

>Glyma11g10290.1   sequence type=CDS   gene model=Glyma11g10290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGGTTTTGAATCCTACACTCCTTGTAGTGTGCACCTTCCCTTTCACCCAATACCGAGCCCTTCAACTTCTTCCCTCAATACCACCACCGCCTCCCTCCCCTTTGCTAGCCGGAGCAGAAGCGGCAGCCCGTGGAGTCGCAGTGTCCTCTGCGAGAAAATGCGGTGTCTCTTGAAGCTGATGCCGTGGGAGAAGAAAATGGACCAGGCGACGCTTCTGGAAGAAAACTACAAATACGTGAAGTTCCTCCAGGCACAGTCACGCGTCCTCCACTCCATTCCCACACCCCAGGCCCTGCAGGTGCTAGAGAACTCCCTCGTGGCCCAAACCATGTGGGGATTTTCATATTTGGAAATAACTATTTCACAATAA

Predicted protein sequences of Glyma11g10290

Limit To All Plant Sequences

>Glyma11g10290.1   sequence type=predicted peptide   gene model=Glyma11g10290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGFESYTPCSVHLPFHPIPSPSTSSLNTTTASLPFASRSRSGSPWSRSVLCEKMRCLLKLMPWEKKMDQATLLEENYKYVKFLQAQSRVLHSIPTPQALQVLENSLVAQTMWGFSYLEITISQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain