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Report for Sequence Feature Glyma11g10290

Feature Type:gene_model
Chromosome:Gm11
Start:7398497
stop:7399087
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g10290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G22100AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:7783711-7784469 REVERSE LENGTH=252 SoyBaseE_val: 4.00E-10ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
UniRef100_G7IKN0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH117 n=1 Tax=Medicago truncatula RepID=G7IKN0_MEDTR SoyBaseE_val: 2.00E-15ISS
UniRef100_I1LU89UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LU89_SOYBN SoyBaseE_val: 3.00E-16ISS

Expression Patterns of Glyma11g10290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g10290 not represented in the dataset
Glyma11g10290 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g10290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma11g10290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g10290
>Glyma11g10290.1   sequence type=CDS   gene model=Glyma11g10290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGGTTTTGAATCCTACACTCCTTGTAGTGTGCACCTTCCCTTTCACCCAATACCGAGCCCTTCAACTTCTTCCCTCAATACCACCACCGCCTCCCTCCCCTTTGCTAGCCGGAGCAGAAGCGGCAGCCCGTGGAGTCGCAGTGTCCTCTGCGAGAAAATGCGGTGTCTCTTGAAGCTGATGCCGTGGGAGAAGAAAATGGACCAGGCGACGCTTCTGGAAGAAAACTACAAATACGTGAAGTTCCTCCAGGCACAGTCACGCGTCCTCCACTCCATTCCCACACCCCAGGCCCTGCAGGTGCTAGAGAACTCCCTCGTGGCCCAAACCATGTGGGGATTTTCATATTTGGAAATAACTATTTCACAATAA
Predicted protein sequences of Glyma11g10290
>Glyma11g10290.1   sequence type=predicted peptide   gene model=Glyma11g10290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGFESYTPCSVHLPFHPIPSPSTSSLNTTTASLPFASRSRSGSPWSRSVLCEKMRCLLKLMPWEKKMDQATLLEENYKYVKFLQAQSRVLHSIPTPQALQVLENSLVAQTMWGFSYLEITISQ*






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