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Report for Sequence Feature Glyma11g10281

Feature Type:gene_model
Chromosome:Gm11
Start:7392797
stop:7397137
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g10281
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G47670AT Annotation by Michelle Graham. TAIR10: Transmembrane amino acid transporter family protein | chr1:17536834-17539486 REVERSE LENGTH=519 SoyBaseE_val: 4.00E-107ISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0015171GO-mf Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity SoyBaseN/AISS
PTHR22950Panther AMINO ACID TRANSPORTER JGI ISS
PF01490PFAM Transmembrane amino acid transporter protein JGI ISS
UniRef100_B9GQ40UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lysine/histidine transporter n=1 Tax=Populus trichocarpa RepID=B9GQ40_POPTR SoyBaseE_val: 8.00E-125ISS
UniRef100_UPI000233C6AFUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C6AF related cluster n=1 Tax=unknown RepID=UPI000233C6AF SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g10281
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g10281 not represented in the dataset
Glyma11g10281 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g10281
ParalogEvidenceComments
Glyma12g02580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g10281 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g097000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g10281
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma11g10281
>Glyma11g10281.2   sequence type=transcript   gene model=Glyma11g10281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAAGACGTAAAGTAGTAAGCAGTTTCATCATTTTTTCTTTTTTTCTCTCTTTTGGTACATTGGAAAGAAAGAAAGGAAGCTTCAATTTCTTCCAATAAAGCGTGTTTTAGAACGTGCTTTTAAGGTATATATATATATACATAACTACATATACCAAATAACTGATTTGCAGCTGAAATTGCTTTCGTTCATTAGTATTTAGTTTTTCACAAGCTAGGGAAGACATGGGAGAAGTGGCTGATGAAGGTCAATATTTCAGATCAGAAATAGCTCTATTGAATTACTCGGATGCAACCTTCAAACCCCCACTTTCTTCTCTGTTGATACACATTGATCCACTCATAATACCCAATGGCCACACTTGTTCTGCATCAGAATCTGATCCATCACCCACTTCTCAGCACCATCAGCAGGAGCAGCATCCCAAAGATGCCTGGCTTCCAATCACTGAATCAAGAAATGGAAATGCCTATTATGCAGCCTTTCATATTCTTAATTCCAACATTGGATTCCAGGCTCTCATGCTTCCCGTTGCCTTCGCCACTCTTGGTTGGGCATGGGGTACAGTATGTTTGTCACTAGCATTTGTTTGGCAACTCTATGCCATATTTCTTCTTGTTCAGCTTCACGAATCCGTCCCCGGAATTCGTCACAGCAGATACCTCTTCCTTGCCATGGCTGCCTTCGGTAAAAAGTTAGGGAAGGTGGCAGCATTATTCCCGGTAATGTACCTTTCAGGAGGCACTTGCGTCATGATAATCATCACCGGTGGTGGGACCCTGAAACAATTACTGAAGACGCTTTGCGACAACGATGATCATGTTCATGAGCAAATAACATGTAATGCCCACGCGCTTAGCGGGGCTGAGTGGTTCTTGGTGTTTACCTGTGTCGCCATTCTCATTGCACAGTTGCCCAACCTCAACTCAATGGCCATGGTTTCTCTCGTCGGCGCCGTTACCTCCGTTACTTATTGCACCCTCTTTTGGGTTCTCTCTGTTAAGAATGGTAGGCCCAACAACGTATCCTATAGCTCATCCCTGCAGTCCCAAGAACACACACCAGTGGCTAAGATCAATGACGTTCTCAATGCCATTGGAATCATTGTGCTAGCCTTCAGAGGACACAATGTTTTGCCCGAAATACAGGCAAGTATTTCAAGTTTGCATACACTAGTGTATAGTATACACATTGCATGAACAAGGTTCTTATAAATATAGTACTAGTTTGATACTATGCGATATGTCAATATATAGAGCGTGTTGCAATTGTGCATTTTAAGTGTCGGGAATATATTCTCCGGGGACGCTGCCTTCAAATTTCGAACAAACATCCAAAAGACCAATGCGAAGAGGAGTTAGCATATCATATGTACTCATTTCCATGTGCATGTTTCCCCTCGCAATTGCCGGATTTTGGGCCTATGGAAACCAGATAAATGACGGGGGATTGTAACTTCGTCCCACAATTCCACAAGAGGCAAATCACAAAATTCTCTATGGGTGCAATATATGTTCTAGTAATAATACATTGTTTAACCAGCTTTCAAATATATGCGATGCCTGTTTTTGACAACCTGGAGATAAGATACACGAGCATAAAGAATCAGAGATGTCCACGATTGGTGAGAACATGCATAAGACTATTCTTTGGGGGGTTGACATTTTTTATTTCGGTCACGTTCCCATTCCTTCCACGCCTATCAGCACTACTCGGAAGCATGACCCTTGTGCCCATTACATATGCATACCCTTGTTTCATGTGGCTATCCCTCAAGAAGCCTCGTCCAAGAGGTTTTGTTTGGTGCTTCAACGTTGCACTCGGTTGTGTAGGGATGCTTCTCAGTGCTCTTTTGGTAGCTGCAGCTATACGGACTCTAGCTCTCAATGGCCTAGATGCTAACTTCTTCAAACCATAACAATTAATATTATGCCATCCAACAGCAACTAGTATATTGCCAACAATTTATTTTAATCTACTGTTAGTGATATACAGAAAATCATTTTTGAACATGATACTCCAGTAATACAAACGTTAAGTTTTGAATTTTTGTATCTCTCTTAATTATTATCATATATTCATATTATAATACTGATCATATTTATCATTTTTCTTTATCTTTTA
Coding sequences of Glyma11g10281
>Glyma11g10281.1   sequence type=CDS   gene model=Glyma11g10281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAAGTGGCTGATGAAGGTCAATATTTCAGATCAGAAATAGCTCTATTGAATTACTCGGATGCAACCTTCAAACCCCCACTTTCTTCTCTGTTGATACACATTGATCCACTCATAATACCCAATGGCCACACTTGTTCTGCATCAGAATCTGATCCATCACCCACTTCTCAGCACCATCAGCAGGAGCAGCATCCCAAAGATGCCTGGCTTCCAATCACTGAATCAAGAAATGGAAATGCCTATTATGCAGCCTTTCATATTCTTAATTCCAACATTGGATTCCAGGCTCTCATGCTTCCCGTTGCCTTCGCCACTCTTGGTTGGGCATGGGGTACAGTATGTTTGTCACTAGCATTTGTTTGGCAACTCTATGCCATATTTCTTCTTGTTCAGCTTCACGAATCCGTCCCCGGAATTCGTCACAGCAGATACCTCTTCCTTGCCATGGCTGCCTTCGGTAAAAAGTTAGGGAAGGTGGCAGCATTATTCCCGGTAATGTACCTTTCAGGAGGCACTTGCGTCATGATAATCATCACCGGTGGTGGGACCCTGAAACAATTACTGAAGACGCTTTGCGACAACGATGATCATGTTCATGAGCAAATAACATGTAATGCCCACGCGCTTAGCGGGGCTGAGTGGTTCTTGGTGTTTACCTGTGTCGCCATTCTCATTGCACAGTTGCCCAACCTCAACTCAATGGCCATGGTTTCTCTCGTCGGCGCCGTTACCTCCGTTACTTATTGCACCCTCTTTTGGGTTCTCTCTGTTAAGAATGGTAGGCCCAACAACGTATCCTATAGCTCATCCCTGCAGTCCCAAGAACACACACCAGTGGCTAAGATCAATGACGTTCTCAATGCCATTGGAATCATTGTGCTAGCCTTCAGAGGACACAATGTTTTGCCCGAAATACAGGGGACGCTGCCTTCAAATTTCGAACAAACATCCAAAAGACCAATGCGAAGAGGAGTTAGCATATCATATGTACTCATTTCCATGTGCATGTTTCCCCTCGCAATTGCCGGATTTTGGGCCTATGGAAACCAGATAAATGACGGGGGATTGTAA

>Glyma11g10281.2   sequence type=CDS   gene model=Glyma11g10281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAAGTGGCTGATGAAGGTCAATATTTCAGATCAGAAATAGCTCTATTGAATTACTCGGATGCAACCTTCAAACCCCCACTTTCTTCTCTGTTGATACACATTGATCCACTCATAATACCCAATGGCCACACTTGTTCTGCATCAGAATCTGATCCATCACCCACTTCTCAGCACCATCAGCAGGAGCAGCATCCCAAAGATGCCTGGCTTCCAATCACTGAATCAAGAAATGGAAATGCCTATTATGCAGCCTTTCATATTCTTAATTCCAACATTGGATTCCAGGCTCTCATGCTTCCCGTTGCCTTCGCCACTCTTGGTTGGGCATGGGGTACAGTATGTTTGTCACTAGCATTTGTTTGGCAACTCTATGCCATATTTCTTCTTGTTCAGCTTCACGAATCCGTCCCCGGAATTCGTCACAGCAGATACCTCTTCCTTGCCATGGCTGCCTTCGGTAAAAAGTTAGGGAAGGTGGCAGCATTATTCCCGGTAATGTACCTTTCAGGAGGCACTTGCGTCATGATAATCATCACCGGTGGTGGGACCCTGAAACAATTACTGAAGACGCTTTGCGACAACGATGATCATGTTCATGAGCAAATAACATGTAATGCCCACGCGCTTAGCGGGGCTGAGTGGTTCTTGGTGTTTACCTGTGTCGCCATTCTCATTGCACAGTTGCCCAACCTCAACTCAATGGCCATGGTTTCTCTCGTCGGCGCCGTTACCTCCGTTACTTATTGCACCCTCTTTTGGGTTCTCTCTGTTAAGAATGGTAGGCCCAACAACGTATCCTATAGCTCATCCCTGCAGTCCCAAGAACACACACCAGTGGCTAAGATCAATGACGTTCTCAATGCCATTGGAATCATTGTGCTAGCCTTCAGAGGACACAATGTTTTGCCCGAAATACAGGCAAGTATTTCAAGTTTGCATACACTAGTGTATAGTATACACATTGCATGA
Predicted protein sequences of Glyma11g10281
>Glyma11g10281.1   sequence type=predicted peptide   gene model=Glyma11g10281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEVADEGQYFRSEIALLNYSDATFKPPLSSLLIHIDPLIIPNGHTCSASESDPSPTSQHHQQEQHPKDAWLPITESRNGNAYYAAFHILNSNIGFQALMLPVAFATLGWAWGTVCLSLAFVWQLYAIFLLVQLHESVPGIRHSRYLFLAMAAFGKKLGKVAALFPVMYLSGGTCVMIIITGGGTLKQLLKTLCDNDDHVHEQITCNAHALSGAEWFLVFTCVAILIAQLPNLNSMAMVSLVGAVTSVTYCTLFWVLSVKNGRPNNVSYSSSLQSQEHTPVAKINDVLNAIGIIVLAFRGHNVLPEIQGTLPSNFEQTSKRPMRRGVSISYVLISMCMFPLAIAGFWAYGNQINDGGL*

>Glyma11g10281.2   sequence type=predicted peptide   gene model=Glyma11g10281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEVADEGQYFRSEIALLNYSDATFKPPLSSLLIHIDPLIIPNGHTCSASESDPSPTSQHHQQEQHPKDAWLPITESRNGNAYYAAFHILNSNIGFQALMLPVAFATLGWAWGTVCLSLAFVWQLYAIFLLVQLHESVPGIRHSRYLFLAMAAFGKKLGKVAALFPVMYLSGGTCVMIIITGGGTLKQLLKTLCDNDDHVHEQITCNAHALSGAEWFLVFTCVAILIAQLPNLNSMAMVSLVGAVTSVTYCTLFWVLSVKNGRPNNVSYSSSLQSQEHTPVAKINDVLNAIGIIVLAFRGHNVLPEIQASISSLHTLVYSIHIA*






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