SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G32240 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 9520 | SoyBase | E_val: 0 | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG0978 | KOG | E3 ubiquitin ligase involved in syntaxin degradation | JGI | ISS | |
| UniRef100_B9S4Y1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Uro-adherence factor A, putative n=1 Tax=Ricinus communis RepID=B9S4Y1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LIN2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LIN2_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma11g10210 not represented in the dataset |
Glyma11g10210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g02520 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g096400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g10210.1 sequence type=CDS gene model=Glyma11g10210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAAGAGACAAAAGTCATATCAGAAGTTTCAGTGACAAAGGTGGCTGAGGAGGCGGATCATAAGAATGATAGCATTAAGGGGACAAATGGAGACCTGGCAAGTGAAGTTAAGAAAGAAGAGGAAGAGAATGCCTTTGATGGAGAATTCATTAAGGTTGAGAAAGAAGAGAATGTCATTGATGATAAGTCCCACAAAACTGAAAGAAGCTCAGATTCTCCTAGCAGAGAATTTCTAGAAGCCCAAGAGAAGATACAGGAACTCGAGGTTGAACTCCAAAGACTAACAGAATCTTTGAAGACCTCTGAGCATGAAAATGATCAGCTGAAGGGAGAGATCTCAGTTACAAAAGAGAAATTGGAGGAGAGTGGAAAGAAATATGAAGAGCTCGATCTGAGTCACAAAAAATTGCAGGAGCAGATTCTTGAGGCTGAGAATAGATATAATCAGCAGCTCGGCACTCTTGAAGAGGCACTACAAAGTCAAGAAGTGAAGCAGAAGGAGCTTTTTCAAGTGAAGGAAGCATTTGATGGTATGAACCTTGAGCTTGAAAACTCCAGAAAGAGGATGCAGGAATTGCAGGATGAGCTACAACTTTCAGCAGATGAGGCACGGAAATTCGAGGAGCTACATAAGCAAAGTGGTTCACATGCTGAATCTGAGGGAAAGAAGGCCTTAGAATTTGAGAGACTACTTGAAGAAGCCAAGCTGACTGCAAAAGGAATGGAAGATGAGATGTCATCCCTTAAGGAAGAATTGAAGGGAGTTTATGATAAGATTGCTGAAAATCAAAAGGTTGAAGAAGCACTTAAAACAACAACAGCAGAACTCTCTACCATCCAGGAGGAGTTGACACTCTCAAAATCCCAGCTATTGGAAGTTGAGAAAAGACTGTCTTCACGGGACTCTTTAGTGGACGAGTTGACCCAGGAATTAAACCTGATAAAGACTTCAGAAACACAGGTAAAGGAAGATATGTTAGCACTTCAAAATCTATTGGCCTCTACAAAGGAAGAAATGCAAGAAAAAATTTCTGAGTTAGAAATTGCAAGGTCCAAGTTGCAGGAGGAGGAAAAATTGAGGGAATCAATTGAAGCTGCACTCAAGAGTCAGGAAGCTCAGTTTGTCACTGTACAAGAGGAACTGACTAAATTTAAAACAGAAAAAGAAACTCTTGAAGCAACCGTGGAAGATCTAACTGGTAGTTTGAAGAAGTTTGAGGAGCTGTGCGCTGATTTAGAGGAAAAGCTAAAGCTCTCAGACGAAAATTTTCTTAAAACAGATTCTCTTTTATCTCAGGCACTTTCAAACAGTGCAGAGCTTGAACAGAAGGTGAAGTCTTTGGAAGATCTCCATAATGAATCTGGAGCTGCTGCAGCTACTGCTACTCAAAGGAGCCTAGAACTTGAGGGACATATTCAGACATCAACTGCAGCTGCAGAAGAGGCAAAATCACAATTGAGGGAGCTGGAAACACGCTTCATAGCAGCAGAGCAGAGGAACGTGGAGCTTGAGCAACAATTAAACTTAGTACAGTTGAAAACCAGTGATGCTGAGAGAGAAGTGGCTGAATTATCTGAGAAAATATCTAATCTCAACGCAAAATTGGAAGAGGCCGAGGAAGAGAAGAATCTTCTTAATTGCCAGGTACAGGAATACACGGAAAAGGTAGCTCAACTTGAATCCGAATTAAATCAATCATCTTTAAGGAGTTCACAATTAGAGGAGGAGCTGAAGACAATCAACGGCAAGTGTGCTGAGCATGAAGACCGAGCCAGTATGAACCATCAGCGTAGCCGAGAACTGGAAGATTTAATCCAGGGTTCTCACTCCAAATTGGAAGATACTGATAAAAAGGTGAGTGAGTTGGAGTTGTTACTAGAAGCAGAGAAATACAGAATTCAGGAACTTGAACAACAAATAAGCACATTAGATGAGAAGCGTAACGCTTCAGAAGCGCAGGCCAATAAATACCTTGATGATGTATCTAATCTGACATCAGAACTTGAGGCAATTCAAGCACGAGCCTCAACCCTCGAAACTACACTGCAAGCGGCTAATGAAAGAGGAAAGGAGTTGGAAGATTCTTTGAATGATGTGACAGAAGAAAAGAAAAAGTTAGAGGATGCTGCTAACAGTTTGAATGAGAAGCTTGCTGAGAAAGAAAACCTATTGGAAATTTTGAGGGATGATTTAAATCTCACACAAGATAAATTGCAAAGCACTGAAAGTGAGCTCCGGGCTGCTGAATTGAGAGAGAGTGAAATAATTGAGAAACTTAAATCTTCTGAAGAAAATCTTGTCGTAAGAGGAAGAGATATAGAGGAGACTGCTACAAGACACTCAGAACTTCAATTGTTGCACGAGTCTCTGACGAGAGATTCAGAACAGAAACTCCAAGAAGCTATAGAAAAATTCAACAACAAGGATTCTGAGGTTCAGTCCCTGCTTGAGAAAATTAAGATTTTGGAGGAACAGATAGCAAAGGCTGGGGAACAGTCTACATCCTTGAAGAATGAATTTGAAGAGAGTTTGAGCAAACTGACTTCATTGGAAAGTGAAAATGAAGATTTGAAACGGCAAATTTTAGATGCCGAGAGCAAAAGTTCTCAGTCTTTTAGTGAAAATGAATTACTTGTAGGAACAAACATTCAACTGAAAACCAAGATTGATGAACTTGAAGAATCATTGAACCATGCTCTATCAGAGAAGGAAGCCGCTGCTCAAGAACTTGTGTCTCATAAGAACAGTATAACTGAACTGAATGACTTACAATCAAAATCCTCCGAAATTCAACGTGCAAATGAAGCTCGCACTCTAGAAGTAGAATCACAATTACAAGAAGCATTGCAGAGGCATACTGAGAAGGAATCAGAAACCATAGAATTGAATGAGAAGCTGAGTACACTAGATAACCAAATAAAGCTTTTCGAAGAACAGGCACGTGAAGCAGTTGCAACTTCTGGAACTCATAAAGCTGAACTGGAGGAGAGTCTCGTAAAATTAAAGCATCTTGAAACTGTCATTGAGGATCTTCAAAACAAGTCACTCCATCTTGAAAAAGAAACTACAGGGCTGAATGAAGAGAACTCAAAGCTTAATCAGGGAATAGCTAGCTATGAATCTAAATTAAGTGATTTACAGGAGAAGCTCTCTGCAGCACTTGTTGAGAAGGAGGAAACAGTTAAAGAGCTACTCACCTTGAAGGATGTCATAAAAGAATTAGGGACAGCACATAGTGCAGAAGTGCAGACATTAAATTCACAGATATCTTCAGTGGGGGATGAGAAGAACATGCTCAATGAAACTAATCAGAATTTAAAGAAGGAACTTCAGTCTCTGATATTTGACCTTGAAGAGAAGCTGAAGGAACAACAGAAAATTGAAGGTTCCCTGAGATCTGAGGTTGAAACTCTCAAAGTTGAGGTTGCTGAGAAATCTACATTGCAAAGTCAGCTGGAGGAAATTGAAGGGAAACTGGCACAAGCTGAATCTAGACTAAATGAAGAGGTTGGAAGTGTTCAAGCTGCTGCTTCTCAACGAGAAGCAGATTTAAGTTCAAAGTTGGAAGACTATGCACAAAAATTCAATGATAGAAATGTATTGAATGATAAGGTTGCAGAACTTGAGAAAGAGTTGCAACTTGCACGGGATGCTATTGCTAACCAGAAAGGAGCAGAGTCCCAGAAGTTGGAACTAGAGGCAGCATTGAAGAATTCTCTTGAAGAACTTGAAACTAAGAAAAATGATATCTCTCTTTTACAGAAACAAGTGACAGATCTAGAGCAGAAATTGCAAGTCGCTGGTGATAAATCCTCAGTCAAGGGCGATGAGGGTGTTGATCAGAAAGAAGGGTTGGAAGTAAAATCCAGGGACATTGGATCAAGCCTTTCAATTCCATCAAAAAGAAAGAGCAAGAAAAAGTCAGAAGTAACAAGTGCTCAAACATCATCTTCATCCGAGACTCATGTTCAAACTGGCCATGATTCTCCTATCATAAATTTCAAGTTCATCTTGGGAGTAGCTCTTGTGTCCATTGTCTTTGGCATAATTCTTGGGAAGCGTTACTAG
>Glyma11g10210.1 sequence type=predicted peptide gene model=Glyma11g10210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEETKVISEVSVTKVAEEADHKNDSIKGTNGDLASEVKKEEEENAFDGEFIKVEKEENVIDDKSHKTERSSDSPSREFLEAQEKIQELEVELQRLTESLKTSEHENDQLKGEISVTKEKLEESGKKYEELDLSHKKLQEQILEAENRYNQQLGTLEEALQSQEVKQKELFQVKEAFDGMNLELENSRKRMQELQDELQLSADEARKFEELHKQSGSHAESEGKKALEFERLLEEAKLTAKGMEDEMSSLKEELKGVYDKIAENQKVEEALKTTTAELSTIQEELTLSKSQLLEVEKRLSSRDSLVDELTQELNLIKTSETQVKEDMLALQNLLASTKEEMQEKISELEIARSKLQEEEKLRESIEAALKSQEAQFVTVQEELTKFKTEKETLEATVEDLTGSLKKFEELCADLEEKLKLSDENFLKTDSLLSQALSNSAELEQKVKSLEDLHNESGAAAATATQRSLELEGHIQTSTAAAEEAKSQLRELETRFIAAEQRNVELEQQLNLVQLKTSDAEREVAELSEKISNLNAKLEEAEEEKNLLNCQVQEYTEKVAQLESELNQSSLRSSQLEEELKTINGKCAEHEDRASMNHQRSRELEDLIQGSHSKLEDTDKKVSELELLLEAEKYRIQELEQQISTLDEKRNASEAQANKYLDDVSNLTSELEAIQARASTLETTLQAANERGKELEDSLNDVTEEKKKLEDAANSLNEKLAEKENLLEILRDDLNLTQDKLQSTESELRAAELRESEIIEKLKSSEENLVVRGRDIEETATRHSELQLLHESLTRDSEQKLQEAIEKFNNKDSEVQSLLEKIKILEEQIAKAGEQSTSLKNEFEESLSKLTSLESENEDLKRQILDAESKSSQSFSENELLVGTNIQLKTKIDELEESLNHALSEKEAAAQELVSHKNSITELNDLQSKSSEIQRANEARTLEVESQLQEALQRHTEKESETIELNEKLSTLDNQIKLFEEQAREAVATSGTHKAELEESLVKLKHLETVIEDLQNKSLHLEKETTGLNEENSKLNQGIASYESKLSDLQEKLSAALVEKEETVKELLTLKDVIKELGTAHSAEVQTLNSQISSVGDEKNMLNETNQNLKKELQSLIFDLEEKLKEQQKIEGSLRSEVETLKVEVAEKSTLQSQLEEIEGKLAQAESRLNEEVGSVQAAASQREADLSSKLEDYAQKFNDRNVLNDKVAELEKELQLARDAIANQKGAESQKLELEAALKNSLEELETKKNDISLLQKQVTDLEQKLQVAGDKSSVKGDEGVDQKEGLEVKSRDIGSSLSIPSKRKSKKKSEVTSAQTSSSSETHVQTGHDSPIINFKFILGVALVSIVFGIILGKRY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
