Glyma11g10140 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma11g10140): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma11g10140): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma11g10140

Feature Type:	gene_model
Chromosome:	Gm11
Start:	7253411
stop:	7255371
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g10140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20060	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme19 \| chr3:7002927-7004283 REVERSE LENGTH=181	SoyBase	E_val: 9.00E-76	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0421	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF26	Panther	UBIQUITIN-CONJUGATING ENZYME E2 A, B	JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_G7JQK2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carrier protein n=1 Tax=Medicago truncatula RepID=G7JQK2_MEDTR	SoyBase	E_val: 5.00E-84	ISS
UniRef100_I1LIM2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LIM2_SOYBN	SoyBase	E_val: 2.00E-129	ISS

Expression Patterns of Glyma11g10140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g10140 not represented in the dataset	Glyma11g10140 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g10140

Paralog	Evidence	Comments
Glyma12g02460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g10140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g095700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g10140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g10140

Limit To All Plant Sequences

>Glyma11g10140.2   sequence type=transcript   gene model=Glyma11g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGACGGCGCCTTTGATTGCTATTAGCCGTTGGCCGTTGCGTTGTGATCTTTTGTTGCAACGTTCAAATTATTTGAACAATTTACGCAAATAGGGTTTGGTGAATTCCGCAACGGCTAGTACAATCTTTTTAAGCCACACCTTTTCTCATCTCATTCATTCACCAACACAACCCTCTTCTTCTTCTTCTTCTTTTTCTTTTCCTCTCTCTTTGCAAGAAGGAAGATTCAGATTCAGATATCACTATCTTCTAATCTTTTTCTTCCTTCTTTCTTTCTTTCTTTCTTTCTGCAACTCAAAATTGTTAGTCGTTCAATCCTCACAATATGGCTGCCAATAATAATATTCATGGGAACACTGAATCTGCTCAATCCAACATTGCTCCTCCCGCTAAGCAGCCTCTACATCCTGCTAAGGCTGTTGATTCTCAATCTGTACTCAAAAGGCTGCAATCTGAATTGATGGCTTTGATGATGAGTGGAGATTCTGGGATATCTGCGTTTCCTGAGGAGGACAACATATTCTTCTGGAAGGGAACAATAACAGGAAGCAAAGATACTGTGTTTGAAGGCACAGAGTATAAGCTATCACTCTCCTTTCCCAATGACTACCCTTTCAAGCCTCCAAAAGTCAAGTTTGAAACAACCTGCTTCCACCCCAATTTTGATGTGCATGGCAACATATGCTTGGACATACTCCAGGATAAATGGTCATCTGCTTATGATGTCAGAACAATTCTTCTTTCCATCCAAAGTCTGCTTGGAGAGCCAAACATTAGTTCACCACTAAACCAACAAGCAGCACAGCTTTGGAGCAATCAAGAAGAATACAGGAAGATGGTGGAGAGGTTGTACAAATCTGCAAATTGATATCAGTCTTGCAGGAGAGAAGAAGGGTCCATTCCTGTCTGCTTCGGAGAAGAGAAAGGGATGAAGCCATTATTTGTTTTTAGGGTGTCCTTTTCTGATGGGCCTGCTTTTATATATTACAATTTACGAATTGTTGCATGTTTCTCTCTTCTTTACAATTGATAGTTAAAAAAAAGATTTCGTTTTTCCTACATTTGTGTTCTTTGTGTGATCATGTTTACGAATTAAATTTAAGTTTTAACAATCATAAAAGACAATTTTGAGGTGTTTAGGGCTTATTGAAATTGAAATAAGCGTTTGTATAAACACTTTCAAGCACTTGTTAAAATAATTTGGAAGTATTTTATATAAATTGTTAATTTTTTTT

Coding sequences of Glyma11g10140

Limit To All Plant Sequences

>Glyma11g10140.1   sequence type=CDS   gene model=Glyma11g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCAATAATAATATTCATGGGAACACTGAATCTGCTCAATCCAACATTGCTCCTCCCGCTAAGCAGCCTCTACATCCTGCTAAGGCTGTTGATTCTCAATCTGTACTCAAAAGGCTGCAATCTGAATTGATGGCTTTGATGATGAGTGGAGATTCTGGGATATCTGCGTTTCCTGAGGAGGACAACATATTCTTCTGGAAGGGAACAATAACAGGAAGCAAAGATACTGTGTTTGAAGGCACAGAGTATAAGCTATCACTCTCCTTTCCCAATGACTACCCTTTCAAGCCTCCAAAAGTCAAGTTTGAAACAACCTGCTTCCACCCCAATTTTGATGTGCATGGCAACATATGCTTGGACATACTCCAGGATAAATGGTCATCTGCTTATGATGTCAGAACAATTCTTCTTTCCATCCAAAGTCTGCTTGGAGGTACCTCACTTGAAAAAGCACTCAATTTAAATTTAAATGCTCTCTCGTGTTTGTTTTCTTTTTTGTTTTTGTTTCTTACTTCTTCTTTTTTTTTTGTAACAATTTAG

>Glyma11g10140.2   sequence type=CDS   gene model=Glyma11g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCAATAATAATATTCATGGGAACACTGAATCTGCTCAATCCAACATTGCTCCTCCCGCTAAGCAGCCTCTACATCCTGCTAAGGCTGTTGATTCTCAATCTGTACTCAAAAGGCTGCAATCTGAATTGATGGCTTTGATGATGAGTGGAGATTCTGGGATATCTGCGTTTCCTGAGGAGGACAACATATTCTTCTGGAAGGGAACAATAACAGGAAGCAAAGATACTGTGTTTGAAGGCACAGAGTATAAGCTATCACTCTCCTTTCCCAATGACTACCCTTTCAAGCCTCCAAAAGTCAAGTTTGAAACAACCTGCTTCCACCCCAATTTTGATGTGCATGGCAACATATGCTTGGACATACTCCAGGATAAATGGTCATCTGCTTATGATGTCAGAACAATTCTTCTTTCCATCCAAAGTCTGCTTGGAGAGCCAAACATTAGTTCACCACTAAACCAACAAGCAGCACAGCTTTGGAGCAATCAAGAAGAATACAGGAAGATGGTGGAGAGGTTGTACAAATCTGCAAATTGA

Predicted protein sequences of Glyma11g10140

Limit To All Plant Sequences

>Glyma11g10140.1   sequence type=predicted peptide   gene model=Glyma11g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAANNNIHGNTESAQSNIAPPAKQPLHPAKAVDSQSVLKRLQSELMALMMSGDSGISAFPEEDNIFFWKGTITGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETTCFHPNFDVHGNICLDILQDKWSSAYDVRTILLSIQSLLGGTSLEKALNLNLNALSCLFSFLFLFLTSSFFFVTI*

>Glyma11g10140.2   sequence type=predicted peptide   gene model=Glyma11g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAANNNIHGNTESAQSNIAPPAKQPLHPAKAVDSQSVLKRLQSELMALMMSGDSGISAFPEEDNIFFWKGTITGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETTCFHPNFDVHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNQQAAQLWSNQEEYRKMVERLYKSAN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain