SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G16260 | AT | Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344 | SoyBase | E_val: 4.00E-113 | ISS |
| GO:0002215 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to nematode | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0043169 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation binding | SoyBase | N/A | ISS |
| PTHR16631 | Panther | GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED | JGI | ISS | |
| PF00332 | PFAM | Glycosyl hydrolases family 17 | JGI | ISS | |
| UniRef100_I1LIL5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LIL5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q6S9W0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Endo-1,3-beta-glucanase n=1 Tax=Glycine max RepID=Q6S9W0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g10080 not represented in the dataset |
Glyma11g10080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g095100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g10080.1 sequence type=CDS gene model=Glyma11g10080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTTTCTCAAGAGGCAACACCGCCATGTCTGCCATATTGCTGCTTCTTGGAATATTATCTTCCACTGGAGTAGAATTTACGGGGGCACAATCTGTTGGTGTGTGTTATGGAGGAAATGGAAACAATCTACCAACAAAGCAAGCAGTGGTGGATCTTTACAAATCAAACAGAATAGGCAAAATCCGTTTATACTATCCAGACGAAGGAGTCCTTCAAGCCCTCAGAGGTTCAAACATAGAGGTGATCCTCGGTGTCCCTAATGACCAACTTCAATCTCTCACCAACGCTGGAGCTGCCACAAATTGGGTCAACAAGTACGTGAAAGCATACTCACAAAACGTGAAATTCAAGTACATTGCAGTTGGTAACGAAATTCACCCTGGTGACTCTTTAGCAGGGTCTGTACTTCCAGCACTTGAAAACATTCAGAAAGCAATTTCTGCCGCCAATTTACAAGGCCAAATGAAGGTGTCAACAGCAATAGACACCACTTTACTTGGCAACTCTTACCCACCAAAAGATGGCGTTTTCAGCAGTAGTGCAAGTTCATACATAAGACCAATTGTAAACTTTTTAGCAAGAAATGGAGCCCCACTTCTCGCAAACGTGTACCCTTACTTCGCCTATGTTAACAACCAACAAAGCATTGGTCTTGACTATGCCTTGTTTACTAAACATGGTAACAACGAGGTTGGGTACCAAAACCTGTTTGATGCATTGTTGGATTCTCTATACGCTGCTCTTGAGAAAGTAGGGGCACCAAATGTGAAGGTTGTTGTGTCTGAGAGTGGTTGGCCATCTGAAGGTGGAGTTGGAGCAACTGTTCAAAACGCAGGAACCTATTACCGCAATTTGATTAATCATGCCAAAGGTGGAACCCCCAAGAGGCCTAGTGGACCCATAGAGACTTACCTCTTTGCCATGTTTGATGAAAACCAGAAGGATGGTCCTGAAATCGAACGACACTTTGGTCTCTTCAGGCCTGACAAATCACCTAAATACCAACTCAGTTTCAATTGA
>Glyma11g10080.1 sequence type=predicted peptide gene model=Glyma11g10080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIFSRGNTAMSAILLLLGILSSTGVEFTGAQSVGVCYGGNGNNLPTKQAVVDLYKSNRIGKIRLYYPDEGVLQALRGSNIEVILGVPNDQLQSLTNAGAATNWVNKYVKAYSQNVKFKYIAVGNEIHPGDSLAGSVLPALENIQKAISAANLQGQMKVSTAIDTTLLGNSYPPKDGVFSSSASSYIRPIVNFLARNGAPLLANVYPYFAYVNNQQSIGLDYALFTKHGNNEVGYQNLFDALLDSLYAALEKVGAPNVKVVVSESGWPSEGGVGATVQNAGTYYRNLINHAKGGTPKRPSGPIETYLFAMFDENQKDGPEIERHFGLFRPDKSPKYQLSFN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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