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Report for Sequence Feature Glyma11g09890

Feature Type:gene_model
Chromosome:Gm11
Start:7051633
stop:7056163
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g09890
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G04590AT Annotation by Michelle Graham. TAIR10: sulfite reductase | chr5:1319404-1322298 FORWARD LENGTH=642 SoyBaseE_val: 0ISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006790GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur compound metabolic process SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009684GO-bp Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0019419GO-bp Annotation by Michelle Graham. GO Biological Process: sulfate reduction SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0010319GO-cc Annotation by Michelle Graham. GO Cellular Compartment: stromule SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0016002GO-mf Annotation by Michelle Graham. GO Molecular Function: sulfite reductase activity SoyBaseN/AISS
GO:0050311GO-mf Annotation by Michelle Graham. GO Molecular Function: sulfite reductase (ferredoxin) activity SoyBaseN/AISS
KOG0560 KOG Sulfite reductase (ferredoxin) JGI ISS
PTHR11493Panther DIHYDROLIPOAMIDE DEHYDROGENASE-RELATED JGI ISS
PTHR11493:SF2Panther FERRIDOXIN NITRITE REDUCTASE JGI ISS
PF01077PFAM Nitrite and sulphite reductase 4Fe-4S domain JGI ISS
PF03460PFAM Nitrite/Sulfite reductase ferredoxin-like half domain JGI ISS
UniRef100_I1LIJ6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LIJ6_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q75NZ0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Sulfite reductase [ferredoxin], chloroplastic n=1 Tax=Pisum sativum RepID=SIR_PEA SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g09890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g09890
ParalogEvidenceComments
Glyma12g02200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g09890 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g093200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g09890
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g09890
>Glyma11g09890.1   sequence type=CDS   gene model=Glyma11g09890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGACGTCTTTTGGACCAGCCACCACCTCAGCGCCGCTTAAGGACCACAAAGTTCAGATCCCAAGCTTCCATGGCTTGAGGTCTTCCTCCGCCTCTGCTCTCCCCCGCAATGCCCTCTCCCTTCCTTCATCCACTCGCTCTCTCTCCCTCATACGTGCTGTTTCCACGCCTGCGCAGTCTGAAACTGCCACTGTCAAGCGCAGCAAAGTCGAAATATTCAAAGAACAAAGCAATTTCATAAGATATCCTCTTAACGAGGACATTTTGACGGATGCTCCTAATATAAGTGAAGCCGCCACTCAATTGATCAAGTTTCATGGTAGCTATCAACAGTACAATAGAGAGGAGCGTGGTTCCAGAAGCTACTCTTTCATGATACGCACTAAGAATCCATGCGGGAAGGTTTCCAACCAACTTTACCTCACCATGGATGATCTTGCTGACCAGTTTGGGATTGGGACGCTTCGCTTGACCACCAGGCAGACGTTTCAGCTCCATGGTGTTCTCAAGAAGGACCTTAAAACAGTCATGGGTACCATTATTAGGAACATGGGCTCGACTCTTGGTGCTTGTGGCGACCTAAACAGGAATGTGCTTGCTCCTGCAGCTCCCCTTGCAAGAAAAGATTACCTCTTTGCTCAACAAACTGCTGAGAACATTGCTGCGCTCCTCGCTCCTCAGTCTGGTTTCTACTATGATATTTGGGTGGATGGGGAAAAGATTTTGACATCAGAACCACCTGAAGTAGTTCAGGCACGAAATGACAATTCTCATGGTACAAACTTCCCGGATTCCCCCGAGCCCATCTATGGAACTCAGTTCTTGCCAAGGAAATTCAAAATTGCTGTTACTGTGCCAACTGATAACTCCGTGGACATTCTCACAAATGATATTGGTGTTGTTGTTGTTACCGATGACGATGGGGAGCCTCAAGGGTTCAACATATATGTTGGTGGTGGAATGGGAAGAACTCATAGGTTGGAAACCACTTTTCCTCGCTTGGCAGAACCAATAGGTTACGTACCAAAGGAGGATATTTTGTATGCAGTGAAAGCAATTGTTGTTACACAACGAGAAAATGGGAGAAGAGATGACCGCAAGTATAGTAGATTGAAATATTTGATAAGCTCTTGGGGAATTGAAAAGTTTAGAAGTGTAGTTGAGCAATATTATGGCAAGAAATTTGAACCTTTCCGTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAGGGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGTGGAAACATGAAAAAGACATTGAGGGAGGTTATCGAGAAGTATAATTTGAATGTAAGAATCACTCCAAATCAGAATATCATCTTGACTGATGTTCGTGCTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCTTTCCCATTATGTCCTCTGGCAATTACTGAAGCTGAACGTGGGATACCTAACATACTTAAGCGGATTCGTGATGTTTTTGATAAGGTTGGCCTGAAGTATAGTGAGTCTGTGGTTGTAAGGATAACTGGCTGCCCTAATGGTTGTGCTAGACCATACATGGCTGAACTTGGACTAGTTGGTGATGGTCCAAATAGCTATCAGATTTGGCTTGGAGGAAACCATAAACAAACATCATTAGCTCGAAGTTTCATGGACAGGGTGAAGATTCTAGACCTTGAAAAAGTTTTGGAGCCTTTGTTTTATTATTGGAAGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATGGGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTAGCACCATCACGCCACAACCTCAAGCTTTTTGCTGACAAGGAGACATATGAATCAATGGATGCATTAGCAAAGCTTCAAAACAAGACTGCTCATCAGTTGGCCATGGAAGTTATCCGTAATTATGTTGCTTCCAACCAAAATGGAAAAGGCGAATGA
Predicted protein sequences of Glyma11g09890
>Glyma11g09890.1   sequence type=predicted peptide   gene model=Glyma11g09890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTSFGPATTSAPLKDHKVQIPSFHGLRSSSASALPRNALSLPSSTRSLSLIRAVSTPAQSETATVKRSKVEIFKEQSNFIRYPLNEDILTDAPNISEAATQLIKFHGSYQQYNREERGSRSYSFMIRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMGTIIRNMGSTLGACGDLNRNVLAPAAPLARKDYLFAQQTAENIAALLAPQSGFYYDIWVDGEKILTSEPPEVVQARNDNSHGTNFPDSPEPIYGTQFLPRKFKIAVTVPTDNSVDILTNDIGVVVVTDDDGEPQGFNIYVGGGMGRTHRLETTFPRLAEPIGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRLKYLISSWGIEKFRSVVEQYYGKKFEPFRALPEWEFKSYLGWHEQGDGKLFYGLHVDNGRIGGNMKKTLREVIEKYNLNVRITPNQNIILTDVRAAWKRPITTTLAQAGLLQPRFVDPLNITAMACPAFPLCPLAITEAERGIPNILKRIRDVFDKVGLKYSESVVVRITGCPNGCARPYMAELGLVGDGPNSYQIWLGGNHKQTSLARSFMDRVKILDLEKVLEPLFYYWKQKRQSKESFGDFTNRMGFEKLKEYIEKWEGPVVAPSRHNLKLFADKETYESMDALAKLQNKTAHQLAMEVIRNYVASNQNGKGE*






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