SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04590 | AT | Annotation by Michelle Graham. TAIR10: sulfite reductase | chr5:1319404-1322298 FORWARD LENGTH=642 | SoyBase | E_val: 0 | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0006790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur compound metabolic process | SoyBase | N/A | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0006972 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic response | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0009266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0019419 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfate reduction | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0010319 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: stromule | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0016002 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sulfite reductase activity | SoyBase | N/A | ISS |
| GO:0050311 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sulfite reductase (ferredoxin) activity | SoyBase | N/A | ISS |
| KOG0560 | KOG | Sulfite reductase (ferredoxin) | JGI | ISS | |
| PTHR11493 | Panther | DIHYDROLIPOAMIDE DEHYDROGENASE-RELATED | JGI | ISS | |
| PTHR11493:SF2 | Panther | FERRIDOXIN NITRITE REDUCTASE | JGI | ISS | |
| PF01077 | PFAM | Nitrite and sulphite reductase 4Fe-4S domain | JGI | ISS | |
| PF03460 | PFAM | Nitrite/Sulfite reductase ferredoxin-like half domain | JGI | ISS | |
| UniRef100_I1LIJ6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LIJ6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q75NZ0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sulfite reductase [ferredoxin], chloroplastic n=1 Tax=Pisum sativum RepID=SIR_PEA | SoyBase | E_val: 0 | ISS |
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Glyma11g09890 not represented in the dataset |
Glyma11g09890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g02200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g093200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g09890.1 sequence type=CDS gene model=Glyma11g09890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGACGTCTTTTGGACCAGCCACCACCTCAGCGCCGCTTAAGGACCACAAAGTTCAGATCCCAAGCTTCCATGGCTTGAGGTCTTCCTCCGCCTCTGCTCTCCCCCGCAATGCCCTCTCCCTTCCTTCATCCACTCGCTCTCTCTCCCTCATACGTGCTGTTTCCACGCCTGCGCAGTCTGAAACTGCCACTGTCAAGCGCAGCAAAGTCGAAATATTCAAAGAACAAAGCAATTTCATAAGATATCCTCTTAACGAGGACATTTTGACGGATGCTCCTAATATAAGTGAAGCCGCCACTCAATTGATCAAGTTTCATGGTAGCTATCAACAGTACAATAGAGAGGAGCGTGGTTCCAGAAGCTACTCTTTCATGATACGCACTAAGAATCCATGCGGGAAGGTTTCCAACCAACTTTACCTCACCATGGATGATCTTGCTGACCAGTTTGGGATTGGGACGCTTCGCTTGACCACCAGGCAGACGTTTCAGCTCCATGGTGTTCTCAAGAAGGACCTTAAAACAGTCATGGGTACCATTATTAGGAACATGGGCTCGACTCTTGGTGCTTGTGGCGACCTAAACAGGAATGTGCTTGCTCCTGCAGCTCCCCTTGCAAGAAAAGATTACCTCTTTGCTCAACAAACTGCTGAGAACATTGCTGCGCTCCTCGCTCCTCAGTCTGGTTTCTACTATGATATTTGGGTGGATGGGGAAAAGATTTTGACATCAGAACCACCTGAAGTAGTTCAGGCACGAAATGACAATTCTCATGGTACAAACTTCCCGGATTCCCCCGAGCCCATCTATGGAACTCAGTTCTTGCCAAGGAAATTCAAAATTGCTGTTACTGTGCCAACTGATAACTCCGTGGACATTCTCACAAATGATATTGGTGTTGTTGTTGTTACCGATGACGATGGGGAGCCTCAAGGGTTCAACATATATGTTGGTGGTGGAATGGGAAGAACTCATAGGTTGGAAACCACTTTTCCTCGCTTGGCAGAACCAATAGGTTACGTACCAAAGGAGGATATTTTGTATGCAGTGAAAGCAATTGTTGTTACACAACGAGAAAATGGGAGAAGAGATGACCGCAAGTATAGTAGATTGAAATATTTGATAAGCTCTTGGGGAATTGAAAAGTTTAGAAGTGTAGTTGAGCAATATTATGGCAAGAAATTTGAACCTTTCCGTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAGGGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGTGGAAACATGAAAAAGACATTGAGGGAGGTTATCGAGAAGTATAATTTGAATGTAAGAATCACTCCAAATCAGAATATCATCTTGACTGATGTTCGTGCTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCTTTCCCATTATGTCCTCTGGCAATTACTGAAGCTGAACGTGGGATACCTAACATACTTAAGCGGATTCGTGATGTTTTTGATAAGGTTGGCCTGAAGTATAGTGAGTCTGTGGTTGTAAGGATAACTGGCTGCCCTAATGGTTGTGCTAGACCATACATGGCTGAACTTGGACTAGTTGGTGATGGTCCAAATAGCTATCAGATTTGGCTTGGAGGAAACCATAAACAAACATCATTAGCTCGAAGTTTCATGGACAGGGTGAAGATTCTAGACCTTGAAAAAGTTTTGGAGCCTTTGTTTTATTATTGGAAGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATGGGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTAGCACCATCACGCCACAACCTCAAGCTTTTTGCTGACAAGGAGACATATGAATCAATGGATGCATTAGCAAAGCTTCAAAACAAGACTGCTCATCAGTTGGCCATGGAAGTTATCCGTAATTATGTTGCTTCCAACCAAAATGGAAAAGGCGAATGA
>Glyma11g09890.1 sequence type=predicted peptide gene model=Glyma11g09890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTTSFGPATTSAPLKDHKVQIPSFHGLRSSSASALPRNALSLPSSTRSLSLIRAVSTPAQSETATVKRSKVEIFKEQSNFIRYPLNEDILTDAPNISEAATQLIKFHGSYQQYNREERGSRSYSFMIRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMGTIIRNMGSTLGACGDLNRNVLAPAAPLARKDYLFAQQTAENIAALLAPQSGFYYDIWVDGEKILTSEPPEVVQARNDNSHGTNFPDSPEPIYGTQFLPRKFKIAVTVPTDNSVDILTNDIGVVVVTDDDGEPQGFNIYVGGGMGRTHRLETTFPRLAEPIGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRLKYLISSWGIEKFRSVVEQYYGKKFEPFRALPEWEFKSYLGWHEQGDGKLFYGLHVDNGRIGGNMKKTLREVIEKYNLNVRITPNQNIILTDVRAAWKRPITTTLAQAGLLQPRFVDPLNITAMACPAFPLCPLAITEAERGIPNILKRIRDVFDKVGLKYSESVVVRITGCPNGCARPYMAELGLVGDGPNSYQIWLGGNHKQTSLARSFMDRVKILDLEKVLEPLFYYWKQKRQSKESFGDFTNRMGFEKLKEYIEKWEGPVVAPSRHNLKLFADKETYESMDALAKLQNKTAHQLAMEVIRNYVASNQNGKGE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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