SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G17060 | AT | Annotation by Michelle Graham. TAIR10: ADP-ribosylation factor B1B | chr5:5611056-5612639 FORWARD LENGTH=192 | SoyBase | E_val: 8.00E-130 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0007264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG0070 | KOG | GTP-binding ADP-ribosylation factor Arf1 | JGI | ISS | |
| PTHR11711 | Panther | ARF-RELATED | JGI | ISS | |
| PF00025 | PFAM | ADP-ribosylation factor family | JGI | ISS | |
| UniRef100_C6SXY9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6SXY9_SOYBN | SoyBase | E_val: 2.00E-141 | ISS |
| UniRef100_G7JRR7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor-like protein n=1 Tax=Medicago truncatula RepID=G7JRR7_MEDTR | SoyBase | E_val: 1.00E-133 | ISS |
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Glyma11g09790 not represented in the dataset |
Glyma11g09790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g02110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g092300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g09790.2 sequence type=transcript gene model=Glyma11g09790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTATATATAAATTAAAAAACGAAAACGTGAAGATTCTTAATTTTATTTGTATTTGTATTATTGAGTTCAAGGCTGGCTAGGGAAGGCAATCTCTTCCGATTAGAGATAGAAGGTTCATCATCTCATCTCAAAAAGGCTTTTGTGATTGATAATCAGTTCTCGATTTGATTTGATCGGAACAGAACAGAGGCATGGGTCAAGCTTTTCGGAAGCTCTTCGACACCTTCTTCGGCAATACCGAGATGCGGGTTGTGATGCTTGGTCTAGATGCTGCTGGCAAAACAACTATACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAGGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGATGTTGGAGGGCAAGAGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGATCTCAAGAATAGAAAGTGGCACATACAAGGCACTTGTGCTCTTCGGGGAGATGGTCTTTATGAGGGTTTGGACTGGTTGTCCACAACTTTGAAGGAGAGACGAGCTGCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTGATGTGATCGATAATCAAATATTTTTTGGGTTACATCTGAAGCTCTCATTAGTAGAAAGTTGCTTCGCCTTTCAGGGTGCTTTAGATATGTATGCGACTTTGCTCCAATTATACAAGTTTGTGCATGACGAATGATTAACTAAATTCTTTTGCGATATTGATATCCCTTATTAAGTGCACTTGTACTGGATAGAAGTTAACGGATACTGGATCACTTGTTCATTCTCCCCCGATTTCCCCCATCTCACTCTTTGTAGTATTTCTGCGTGTCTTTACCTGTGATGGTGACTCATAAAAATAATGACTCTGACAAATGTGTCACGATTCTCTCTTCAGAACGTTTTCTTGTGATTTAATTCAATTGGGTGTTTGCAATTATTTAATCTTCTTTTCTTTTGCTTATAA >Glyma11g09790.3 sequence type=transcript gene model=Glyma11g09790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAATTTTAACTTTTCAAATCGTTTGCTTTTGCAATCAGCTATCATCATGATTAATAAAAATTCTTGTGTTCGTTAATACTTGTGTTTCTTATTCTCATCATCCATCTTCTAATCATTGATTCTTGATCTATGCACGAGTTTCCGTACTTACATTTGTTGGGTTTAGGTTGTGATGCTTGGTCTAGATGCTGCTGGCAAAACAACTATACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAGGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGATGTTGGAGGGCAAGAGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGATCTCAAGAATAGAAAGTGGCACATACAAGGCACTTGTGCTCTTCGGGGAGATGGTCTTTATGAGGGTTTGGACTGGTTGTCCACAACTTTGAAGGAGAGACGAGCTGCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAATTTTCAAGAGGTATTTTGGCAATGGACGAATGTGTTGAGTGTGTGGCCAGTTCTAAGTTGATGTGATCGATAATCAAATATTTTTTGGGTTACATCTGAAGCTCTCATTAGTAGAAAGTTGCTTCGCCTTTCAGGGTGCTTTAGATATGTATGCGACTTTGCTCCAATTATACAAGTTTGTGCATGACGAATGATTAACTAAATTCTTTTGCGATATTGATATCCCTTATTAAGTGCACTTGTACTGGATAGAAGTTAACGGATACTGGATCACTTGTTCATTCTCCCCCGATTTCCCCCATCTCACTCTTTGTAGTATTTCTGCGTGTCTTTACCTGTGATGGTGACTCATAAAAATAATGACTCTGACAAATGTGTCACGATTCTCTCTTCAGAACGTTTTCTTGTGATTTAATTCAATTGGGTGTTTGCAATTATTTAATCTTCTTTTCTTTTGCTTATAA
>Glyma11g09790.1 sequence type=CDS gene model=Glyma11g09790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTCAAGCTTTTCGGAAGCTCTTCGACACCTTCTTCGGCAATACCGAGATGCGGGTTGTGATGCTTGGTCTAGATGCTGCTGGCAAAACAACTATACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAGGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGATGTTGGAGGGCAAGAGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGATCTCAAGAATAGAAAGTGGCACATACAAGGCACTTGTGCTCTTCGGGGAGATGGTCTTTATGAGGGTTTGGACTGGTTGTCCACAACTTTGAAGGAGAGACGAGCTGCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAA >Glyma11g09790.2 sequence type=CDS gene model=Glyma11g09790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTCAAGCTTTTCGGAAGCTCTTCGACACCTTCTTCGGCAATACCGAGATGCGGGTTGTGATGCTTGGTCTAGATGCTGCTGGCAAAACAACTATACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAGGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGATGTTGGAGGGCAAGAGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAG >Glyma11g09790.3 sequence type=CDS gene model=Glyma11g09790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTGGTCTAGATGCTGCTGGCAAAACAACTATACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAGGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGATGTTGGAGGGCAAGAGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGATCTCAAGAATAGAAAGTGGCACATACAAGGCACTTGTGCTCTTCGGGGAGATGGTCTTTATGAGGGTTTGGACTGGTTGTCCACAACTTTGAAGGAGAGACGAGCTGCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAA
>Glyma11g09790.1 sequence type=predicted peptide gene model=Glyma11g09790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGQAFRKLFDTFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLRALWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQTIINDPFMLHSIILVFANKQDLKGAMSPREICEGLGLFDLKNRKWHIQGTCALRGDGLYEGLDWLSTTLKERRAAGYSSIGLGTSSF* >Glyma11g09790.2 sequence type=predicted peptide gene model=Glyma11g09790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGQAFRKLFDTFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLRALWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQTIINDPFMLHSIILVFANKQDLEQCHQGKYVKD* >Glyma11g09790.3 sequence type=predicted peptide gene model=Glyma11g09790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLRALWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQTIINDPFMLHSIILVFANKQDLKGAMSPREICEGLGLFDLKNRKWHIQGTCALRGDGLYEGLDWLSTTLKERRAAGYSSIGLGTSSF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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