SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G35050 | AT | Annotation by Michelle Graham. TAIR10: Transducin family protein / WD-40 repeat family protein | chr4:16682752-16684751 REVERSE LENGTH=424 | SoyBase | E_val: 0 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010074 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of meristem identity | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0264 | KOG | Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 | JGI | ISS | |
| PTHR22850 | Panther | WD40 REPEAT FAMILY | JGI | ISS | |
| PTHR22850:SF43 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| PF12265 | PFAM | Histone-binding protein RBBP4 or subunit C of CAF1 complex | JGI | ISS | |
| UniRef100_G7JMD2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WD-40 repeat-containing protein MSI3 n=1 Tax=Medicago truncatula RepID=G7JMD2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LIH2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LIH2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g09700 not represented in the dataset |
Glyma11g09700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g091500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g09700.1 sequence type=CDS gene model=Glyma11g09700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGAAGAGTACGAAGAGGAGGGCGGTGAGATTGAACAAGAGTTCTCCGTTTGGAAGAAGAACACTCCTCTCTTGTACGATTTCTTCATTTCTCACCCTCTTCAATGGCCTTCTCTCACCGTTCACTGGCTTCCTTCCTCTCCCCATCCCCACTCCCACCCTTCCTTCAATCTCCACAAACTTCTTCTCGCCACTCACACTTCCGACGGCGAATCCAACTTCCTCATGCTCGCCGACGCATACCTCCCCACCGACACCTCACAACCCATCGTCGCCTCCGATCCAAACTACCCCGTTCTTCCCAAGGTGGAGATTTCCCAAAGGATTCCTGTTGATGGGGAGGTGAATCGAGCTCGATGCATGCTGCAGAACCCTAGTATTGTTGCTGCTAAGACTTGTAATTCTGAGGTTTATGTGTTTGATTTCACCAAGGAACATGGGAGTGAGTGTAACCCTGATTTGAGGTTAAGGGGTCATGATAAAGAGGGTTACGGTTTGTCTTGGAGCCCTTTTAAGAACGGGTATCTTTTGAGTGGTTCGCATGACCATAAGGTTTGCTTGTGGGATGTGCCTGCTGCTGCCTCTCAAGATAAGGTGCTTGATGCATTTCATGTTTATGAGGGTCATGAGAATGTGGTTGAAGATGTGTCCTGGAATTTGAAGGATGAGAATATGTTTGGGTCCGGTGGAGATGACTGCAAATTGATCATTTGGGACTTGCGGACGAACAAACCCCAACAATCAATCAAACCACATGAAAAGGAGGTGAACTTTCTTTCTTTCAATCCATATAATGAATGGATTTTGGCTACAGCATCTTCAGATACAATTGTTGGCCTCTTTGATACACGGAAGCTGGCAGTGCCGCTACATGTTTTAACTAGCCACACAGATGAAGTTTTCCAGGTAGAGTGGGATCCTAATCATGAGAATGTGTTGGCATCTTCTGGTGCTGACAGACGGCTGATGGTTTGGGACCTTAACAGAGTTGGTGATGAGCAGATAGAAGGAGATGGTGAAGGTGGCCCCCCTGAACTACTCTTCTCTCATGGGGGTCACAAAGGGAAAATATCAGATTTTTCATGGAACAGAAATCAGCCATGGGTTATCACAAGCGTAGCTGAGGACAATTCTTTCCATGTCTGGCAAATGGCAGAGAGCATTTACAATGATGGAGATGATGACAACATGTGGACGGCCAATGATTAA
>Glyma11g09700.1 sequence type=predicted peptide gene model=Glyma11g09700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEEYEEEGGEIEQEFSVWKKNTPLLYDFFISHPLQWPSLTVHWLPSSPHPHSHPSFNLHKLLLATHTSDGESNFLMLADAYLPTDTSQPIVASDPNYPVLPKVEISQRIPVDGEVNRARCMLQNPSIVAAKTCNSEVYVFDFTKEHGSECNPDLRLRGHDKEGYGLSWSPFKNGYLLSGSHDHKVCLWDVPAAASQDKVLDAFHVYEGHENVVEDVSWNLKDENMFGSGGDDCKLIIWDLRTNKPQQSIKPHEKEVNFLSFNPYNEWILATASSDTIVGLFDTRKLAVPLHVLTSHTDEVFQVEWDPNHENVLASSGADRRLMVWDLNRVGDEQIEGDGEGGPPELLFSHGGHKGKISDFSWNRNQPWVITSVAEDNSFHVWQMAESIYNDGDDDNMWTAND*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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