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Report for Sequence Feature Glyma11g09580

Feature Type:gene_model
Chromosome:Gm11
Start:6846370
stop:6848366
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g09580
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35605AT Annotation by Michelle Graham. TAIR10: SWIB/MDM2 domain superfamily protein | chr2:14946161-14947027 FORWARD LENGTH=109 SoyBaseE_val: 3.00E-37ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR13844Panther BRG-1 ASSOCIATED FACTOR 60 (BAF60) JGI ISS
PF02201PFAM SWIB/MDM2 domain JGI ISS
UniRef100_B9SDA4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Brg-1 associated factor, putative n=1 Tax=Ricinus communis RepID=B9SDA4_RICCO SoyBaseE_val: 1.00E-34ISS
UniRef100_I1LIF9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LIF9_SOYBN SoyBaseE_val: 3.00E-88ISS

Expression Patterns of Glyma11g09580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g09580 not represented in the dataset
Glyma11g09580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g09580
ParalogEvidenceComments
Glyma01g35780 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g09580 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g090400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g09580
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g09580
>Glyma11g09580.1   sequence type=CDS   gene model=Glyma11g09580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTGCTAGGGTTTTCGGAGCGATCGCCGGGAGAGCGTTCATGGCCGCGGCGTCGAAGAGTTCGGCCAAGAAGAAACCCGTTCCGTCCGGCGGAGCCGCTGCAAAAGCCGCCGTGAAAAAGCCGGCCGCGCCTAGGACCACCAACTCCGGCATACAGAAGGTGGTTCCGGTGTCTTCCGAGCTCGGAGACTTCCTCGGCGCTCCTCAAGTGTCGCGAACCGACGCCGTCAAGAAAGTCTGGGCCTACATCAAGCTGCAGAATCTTCAGAATCCAGCAAATAAGAAGGAGATCTTTTGTGATGAAAAGCTGAAGACCATTTTTGAGGGGAAAGATAAGGTTGGGTTCACAGAGATTGCTAAATTGCTGTCTAGCCATTTTGTGAAATCTGGCTGA
Predicted protein sequences of Glyma11g09580
>Glyma11g09580.1   sequence type=predicted peptide   gene model=Glyma11g09580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASARVFGAIAGRAFMAAASKSSAKKKPVPSGGAAAKAAVKKPAAPRTTNSGIQKVVPVSSELGDFLGAPQVSRTDAVKKVWAYIKLQNLQNPANKKEIFCDEKLKTIFEGKDKVGFTEIAKLLSSHFVKSG*






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